Dbfetch
ID JF909075; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909075; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Anjouan:AJ26BP1:2009 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 840f6fe777a024f1360d0beba529b2f4. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Anjouan:AJ26BP1:2009" FT /mol_type="genomic DNA" FT /country="Comoros:Anjouan" FT /lat_lon="12.19 S 44.51 E" FT /collection_date="2009" FT /db_xref="taxon:1229189" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LX59" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LX59" FT /protein_id="AEG89784.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCP" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LX52" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LX52" FT /protein_id="AEG89783.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LYZ8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LYZ8" FT /protein_id="AEG89787.1" FT /translation="MDFRTGELITAPQAKNGVFTWEITNPLYFDITNHDKRPGNMNHDI FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT FT VITAVDHVLYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LX79" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LX79" FT /protein_id="AEG89786.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRALRRSRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQEAREHEPRHHHTPDTFQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LX78" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LX78" FT /protein_id="AEG89785.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTHVPEELEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLNAWALKNATFVTLHEPL FT FSSAHQSPTPHSEDQGPQT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LX81" FT /protein_id="AEG89788.1" FT /translation="MGCLISMFSSNSKASSNVQTKDSSISFPHPDQHISIRIFRELNRR FT PMSRLTLKREGNFLTMEFSKSMPEVQGGRASI" XX SQ Sequence 2801 BP; 738 A; 554 C; 718 G; 791 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccactg tatgaccgcg tccatgaaat 60 aaagtggtcc ccgcgcactg gggttggtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgttgt ttgtctttat agacttcgtc acgaagtagt ggaacgcgtc aacatgtggg 180 atccattgtt gaatgatttt cccgaaactg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc gtatgaacag agggatgatg ttaagcacac tggtatggtc 600 cgatgtgtca gtgatgttac tcgtggatca ggcatcaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttctttctc gttcgagata gaaggcctta tgggccgagc 780 ccgcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaacggtg 840 aagaatgatc tgagggatcg gtatcaggtg ttacgaaaat tctatgcgac cgttgttggt 900 ggaccctccg ggatgaagga acaagcgctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atacggagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcaaat cctgtgtacg ccactctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagtg tgtttagtaa tacatcgtac agaacatgat caacagctgt aattacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactctt 1260 aagaaaagac cagtctgagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcgcca atgccttccg gaggttgtgg ttgaaacgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggcct cttgtcgtgg ttggtgatgt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 aaatccatgg ttgatgcagt cgatatggag atagaacgag cagccacatt cgaggtctac 1560 ccggctacgt ctgagggccc tggtcttcgc tgtgcggtgt tggactttga tgggcacttg 1620 agaacaatgg ctcgtggagg gtgacgaagg tggcattctt taaagcccag gcgttaaggg 1680 actgattctt ttcctcgtcc agaaactctt tatatgatga tgttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaataggctt cccgtacttt gtattgcttt 1800 gccagtccct ttgggccccc atgaattctt tgaagtgttt gagataatgc gggtctacgt 1860 cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagtgaac gagcccacat ggttttcccg gttcggctat 1980 caccttcgag aacaatactg atcggtctcc atggccgcgc agcgggactg catatatttt 2040 ctgataccca tacctctagt tcttcgggaa cgtgtgtaaa tgatgatgat aagaatggac 2100 taacgtaagt ttgtggcgga gcctggaaga ttctatctgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttt ggatcttttt ctttaataat ttgaagagct tctgatttag 2220 aagaagcatt caacgcgtct gcatatacct gagctaaatg ctggccctcc ccccttgcac 2280 ttctggcatc gacttggaaa attccatcgt caagaaattc ccctcccttt tcaatgtaag 2340 ccttgacatc ggacgacgat ttagctccct gaatattcgg atggaaatgt gttgatcggg 2400 atggggaaat gagatcgaag aatctttggt ttgtacattg gaacttgcct tcgaattgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc tctgcaaacc ctaatgaatt 2520 tgatattcgt cgggtaagaa agggctttta attgggaaag ggcctcttcc ttggttaatg 2580 agcatcgggg ataggtgatg aaataatttt tggcatttat ttgaaaacga cctgctcttg 2640 gcatatttgc tgtcgtattg gatcggggga cactcaaaac tccaggggaa cggtggaatg 2700 gggggcaata tatatgatgt cccccaatgg catatgtgta aatacgtcga cctccattca 2760 aattttgaat tgcgaatatt ggcggccatc cgattaatat t 2801 //