ID JF909063; SV 1; circular; genomic DNA; STD; VRL; 2802 BP. XX AC JF909063; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Anjouan:AJ01B07:2004 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2802 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2802 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 9ba15bafebb5893adff79498cdd0cabb. XX FH Key Location/Qualifiers FH FT source 1..2802 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Anjouan:AJ01B07:2004" FT /mol_type="genomic DNA" FT /country="Comoros:Anjouan" FT /lat_lon="12.13 S 44.42 E" FT /collection_date="2004" FT /db_xref="taxon:1229189" FT gene 175..531 FT /gene="AV2" FT CDS 175..531 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LX83" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LX83" FT /protein_id="AEG89712.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAEDVQNVSKPRCP" FT gene 335..1108 FT /gene="AV1" FT CDS 335..1108 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LX04" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LX04" FT /protein_id="AEG89711.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVIGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1105..1509) FT /gene="AC3" FT CDS complement(1105..1509) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LX08" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LX08" FT /protein_id="AEG89715.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDKRPGNMNHDI FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT FT VISAVDHVLYAVLLNTLQVTEQHAIKFNIY" FT gene complement(1250..1657) FT /gene="AC2" FT CDS complement(1250..1657) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LYT7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LYT7" FT /protein_id="AEG89714.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKNRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTFQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1566..2645) FT /gene="AC1" FT CDS complement(1566..2645) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LX06" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LX06" FT /protein_id="AEG89713.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKALSYPTNIQFIR FT VCRELHRDGVPHLHVLIQFEGKFQCTNQKFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEEVEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPQSSYKEFLEEEKHQSLKAWALKNATFVTLHEPL FT FSSAHQSPTPHSEEQGPPT" FT gene complement(2255..2488) FT /gene="AC4" FT CDS complement(2255..2488) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LX09" FT /protein_id="AEG89716.1" FT /translation="MGCLISMFSSNSKASSNVPTRNSSISFPPPAQHISIRTFRELNHR FT PMSKLTLKREGNFLTMEFSRSMPEVQGARASI" XX SQ Sequence 2802 BP; 732 A; 557 C; 729 G; 784 T; 0 other; accggatggc cgcgcccgaa aaaagcaggt ggaccccacc agatggccgc gcccgtgaaa 60 gaaagtggtc cccgcgcacg tgtttcggtc ggccagtcat atttacgcgt gaaagtctag 120 atatttgttg ttggtcttta tagacttcgt cgcgaagtag tgaagcgcgt caacatgtgg 180 gatccattat tgaacgattt ccctgaaacc gttcacggtt tccgttctat gcttgctgtt 240 aaatacctgt tacatctgga acaggaatac gatcgcggta ctgtcggggc tgagtatata 300 cgggatctaa taggggtgct acggtgtaag agttatgtcg aagcgaccag gagatataat 360 aatctcaaca cccgtatcca aggtgcggag gaggctgaac ttcgacagcc catacacgaa 420 ccgtgttgtt gcccccactg tccgcgtcac cagaagcaaa atatgggcca acaggcccat 480 gtatcggaag ccgaagatgt acagaatgta tcgaagccca gatgtcccta agggctgtga 540 aggcccatgt aaggttcagt cgtatgaaca gagggatgat gttaagcaca ctggtatggt 600 ccgatgtgtc agtgatgtta ctcgtgggtc aggcattacc cacagagtcg ggaagaggtt 660 ttgtgtgaag tccatatata tattgggcaa gatctggatg gatgagaata tcaagaagca 720 aaatcatacg aaccatgtta tgttcttcct cgttcgagat agaaggcctt atggtccgag 780 cccgcaagat tttggacaag tgttcaacat gtttgataat gaacctacta ctgcaactgt 840 gaagaatgat cttagggacc ggtatcaggt gttacgtaaa ttctatgcga ctgtgattgg 900 tggaccctcc gggatgaagg aacaagcgct ggttaagagg ttttttagga tcaataatca 960 tgtagtgtat aatcatcagg aacaggccaa gtatgagaat catactgaga atgcgttgtt 1020 attgtatatg gcatgtacac atgcctcaaa tcctgtgtac gctactttga aaatacgcat 1080 ctatttctat gatgcagtga caaattaata aatgttgaat tttattgcat gttgctccgt 1140 aacttggagt gtgtttagta atacagcgta cagaacatga tcaacagcgc taattacagt 1200 gttaatggaa ataacgccta tcatatctaa atatttgagc acttgatatc taaatactct 1260 taagaaaaga ccagtctgag gccgtaaggt cgtccagacc ttgaagttga gaaaacactt 1320 gtgaatcgcc aatgccttcc ggaggttgtg gttgaaacgt atctggagtg tgatgatgtc 1380 gtggttcatg ttccctggcc tcttgtcgtg gttggtgatt tcgaaataga ggggatttgt 1440 tatttcccag gtaaaaacgc cattctttgc ttgaggcgca gtgatgagtt cccctgtgcg 1500 agaatccatg gttgatgcag tcgatatgga gatagaacga gcaaccgcat tcgaggtcta 1560 cccgcctacg tcggagggcc ctgttcttcg ctgtgcggtg ttggactttg atgggcactt 1620 gagaacaatg gctcgtggag ggtgacgaag gtggcattct ttaaagccca ggctttaagg 1680 gactgatgct tttcctcttc cagaaactct ttatatgatg attgtggtcc tggattgcag 1740 aggaagatag tgggaatgcc gcctttaatt tgaattggct tcccgtactt tgtattgctt 1800 tgccagtccc tttgggcccc catgaattct ttgaagtgtt tgaggtagtg ggggtcgacg 1860 tcatcaatga cgttgtacca tgcgtcgttt gaatatacct ttggagacag atccaggtgt 1920 ccacatagat aattatgggg tcccagtgaa cgagcccaca tggttttccc ggtccggcta 1980 tcgccttcga gaacaatact gatcggtctc catggccgcg cagcgggact gcatatattt 2040 tctgataccc atacctctac ttcttcgggg acttgtgtaa atgatgatga taagaacgga 2100 ctaacgtaag tttgtggcgg agcctggaag attctatctg cgttagcaga tatgttatgg 2160 aactgtaaaa aaaaggactt gggatctttt tctttgataa tttgaagagc ttcggattta 2220 gaagaagcat tcaacgcgtc ggcatatacc tgagctaaat gctggccctc gccccttgca 2280 cttcgggcat cgacctggaa aattccatcg tcaagaaatt cccctccctt ttcaatgtaa 2340 gctttgacat cggacgatga tttagctccc tgaatgttcg gatggaaatg tgttgagcgg 2400 gagggggaaa tgagatcgaa gaatttctgg ttggtacatt ggaacttgcc ttcgaattgg 2460 atgagaacat ggagatgagg caccccatcc cgatgtagtt ctctgcaaac cctaatgaat 2520 tggatattcg tcgggtaaga aagggctttt aattgggaaa gggcctcttc ctttgttaat 2580 gagcatcggg gataggttat gaaataattt ttggcattga tttgaaaacg accggctctt 2640 ggcatatttg ctgtcgttta ggatcggggg acactcaaaa ctccagggga atggtggaac 2700 gggggacaat atatatgatg tcccccaatg gcatatgtgt aaataggtcg acctccattc 2760 aaaatttgaa ttgcgaatat tggcggccat ccgattaata tt 2802 //