Dbfetch
ID JF907582; SV 1; circular; genomic DNA; STD; VRL; 2573 BP. XX AC JF907582; XX DT 10-OCT-2011 (Rel. 110, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Sida golden yellow vein virus isolate 177 segment DNA-B, complete sequence. XX KW . XX OS Sida golden yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2573 RX DOI; 10.1007/s00705-011-1123-8. RX PUBMED; 21964921. RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.; RT "Begomoviruses infecting weeds in Cuba: increased host range and a novel RT virus infecting Sida rhombifolia"; RL Arch. Virol. 157(1):141-146(2012). XX RN [2] RP 1-2573 RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez Y.; RT ; RL Submitted (02-MAY-2011) to the INSDC. RL Fruticultura Subtropical y Fitopatologia, Instituto de Hortofruticultura RL Subtropical y Mediterranea 'La Mayora', Estacion Experimental La Mayora, RL Algarrobo-Costa, Malaga 29750, Spain XX DR MD5; c525eddc8f32c9d60aeb64cfc2f817e8. XX FH Key Location/Qualifiers FH FT source 1..2573 FT /organism="Sida golden yellow vein virus" FT /segment="DNA-B" FT /host="Malvastrum coromandelianum" FT /isolate="177" FT /mol_type="genomic DNA" FT /country="Cuba" FT /collected_by="E. Fiallo-Olive" FT /collection_date="May-2009" FT /clone="177Pst7" FT /db_xref="taxon:223317" FT gene 383..1153 FT /gene="BV1" FT CDS 383..1153 FT /codon_start=1 FT /gene="BV1" FT /product="nuclear shuttling protein" FT /db_xref="GOA:G4XU63" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:G4XU63" FT /protein_id="AEQ02396.1" FT /translation="MYLVRNKRGSTFNQRRYYPRNTVFNRSAAFKRHDVKRRLGHANKP FT NDDPNMVAQRIHENQYSPEFVMTQNSAISTFISYPSLGKIEPSRSRSYIKLKRLRFRGT FT VKIERVLSDVNMDGSVPKLEGVFSIVIVVDRKPHLGSSGSLHTFDELFGAMIHSHGNLG FT ITPSLKDRFYIRHVFKQVISVDKDTTMFDVKGSTSLSNRRFNCWASFKDLECDSCKGVY FT DNISKNALLVYYCWMSDTMSKASNFVSFDLDYIG" FT gene complement(1189..2070) FT /gene="BC1" FT CDS complement(1189..2070) FT /codon_start=1 FT /gene="BC1" FT /product="movement protein" FT /db_xref="GOA:G4XU64" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:G4XU64" FT /protein_id="AEQ02397.1" FT /translation="MDSQLMNPPSAFNYIESHRDEYQLCHDLTEIVMQFPSTAAQITAR FT LSRSCMKIDHCVIEYRQQVPINASGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFTDKDVDFSHVDYGKWERKPIRCASMSRVGIRGPIEIRPGESWASRSTIGTAQSDAD FT SEIENELHPYRHLSRLGTTVLDPGESASVVGAQRAESNITMSLGQLNELVRTTVQECIN FT SNCRASQPKSLQ" XX SQ Sequence 2573 BP; 660 A; 522 C; 564 G; 827 T; 0 other; accggatggc cgcgctttgg tgcccccctg gtgcccgctc tcacgcgctc ccctccctgg 60 tgccttctca cgcgctcttc cattggtgct ggtgttccac gctccttttt gtgtttggcc 120 tttagttcaa attaaagggt tatgctttat cgcgcgattt gaatattatt ggtcgcgatg 180 actgaccatg gcccattgta cttgattatt gacgtggctt aatgttgtcc atgttgctga 240 gcctatttgt ttaatcatga tcgacatgcc ttttctatat attttagaga agtatgtatc 300 atacgtcaag tggctcattt gtgtcccacg tttatattgt tattcctaat aattgtttat 360 ctattattat taacatctga atatgtatct cgttaggaat aaacgtgggt ccacattcaa 420 ccaacgtcgt tattatccac gtaatactgt gtttaaccga tcagctgctt ttaagagaca 480 tgatgtcaaa cgacgattgg gtcatgcgaa taagcccaat gacgatccca atatggtagc 540 ccaacgcatt catgagaatc aatatagtcc agagtttgtt atgacacaga actccgccat 600 atcaaccttc atcagctatc cgagtcttgg taagatagaa cccagtcgaa gcaggtctta 660 tataaagttg aaacgactcc gtttcagagg gactgtaaaa attgaacgtg tactatcgga 720 tgtgaatatg gatggttctg ttcccaaatt ggaaggagtt ttctctattg ttatagttgt 780 ggatcgtaaa ccccatttgg gttcgagtgg tagtcttcat acattcgacg aactattcgg 840 tgcaatgatc catagtcatg gtaatcttgg aataactccg tctctgaaag atcgcttcta 900 tattcgacac gtgttcaaac aggtgatatc tgtcgataag gatacgacaa tgtttgacgt 960 gaaagggtct acatcgctgt ctaataggcg attcaattgc tgggcatcgt tcaaggatct 1020 tgaatgcgac tcatgcaaag gtgtctatga caacattagc aagaacgccc tattagttta 1080 ttattgctgg atgtctgata cgatgtctaa ggcgtccaat tttgtatcgt ttgatctcga 1140 ttatatcgga tgattaataa aataacattt tattatattt ataaaattct attgcaatga 1200 tttgggctgt gaagccctgc aattactatt aatacattct tggactgttg tcctaaccaa 1260 ctcgtttaat tggcccaatg acattgttat attggattct gctctctggg cccccactac 1320 cgaagcagac tctcctgggt ctagtactgt tgtcccgagc ctgctcaggt gtctgtatgg 1380 atgcagttcg ttctctatct ctgagtccgc atctgactgg gccgttccta ttgtgctcct 1440 ggaagcccat gattctccgg gccgtatttc aattgggcct cgtattccaa ctctggacat 1500 ggacgcgcat ctgatgggct tcctttccca tttcccatag tccacatgtg agaagtccac 1560 gtctttgtct gtgaactgtt tggacagtat ctttaccgtc ggtgcccgga agggaatatc 1620 cactgagtgt ttggctgtgg acaatttcag cttccctttg aacttggcga agtgggtcct 1680 ctgatgaaca ttcgtatcag aaactctgta atatagtttc catggaattg ggtctttcag 1740 agagaagaag gaagctgaga aatagtggag atctatgttg catctgatcg ggaaagtcca 1800 cgacgcctgt aatgactcat tgtctgtcat cctcttgtca tgtatctcca ctattacagt 1860 cccagaagcg tttatgggga cctgttgcct gtactctatg acgcagtggt cgattttcat 1920 acaacttctg ctaagtcttg ctgtgatctg tgccgccgtc gaaggaaatt gcatcactat 1980 ctcagttaag tcatggcaga gctgatattc atctctgtga gactctatat aattgaatgc 2040 acttggagga ttcattaatt gcgaatccat ctgagaaaat agggccgcgc agcggcactg 2100 accaccgagg ttgaactggt aaagaaagaa ttagggtttc tatttattga cagtcgaaga 2160 tgtcattcta agaataaaag gcgtactgga taaggattat gatctgagta atgataaacc 2220 cagaaatctg cagaagaaca ggaggaacaa tcgttttatg ttcttataaa ttgaagaaca 2280 aacgtttaac ttttccagaa attgctagtg ttcttgagaa aggggagaaa tatgaagagt 2340 aaagttatgt ttatggtatg ttagatctga aaggggttat atagacattc tcttttttgt 2400 tgatttattt gcagtttttt accaatggca tttttgtaat aataaggggg tcaccgattg 2460 aggctctctc aaacttgctc tagcaattgg ggaacggggt ctcatttata ctagaagcct 2520 caatagaact ctcaatctcg ttcatacacg tggcggccat ccgctataat att 2573 //