ID JF907429; SV 1; linear; genomic RNA; STD; VRL; 2357 BP. XX AC JF907429; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Maize stripe virus isolate MStV-SR-INDIA segment RNA3, complete sequence. XX KW . XX OS Tenuivirus zeae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2357 RA Srinivas K P Sreenivasulu.P.; RT "Complete sequence analysis of RNA3 of Maize stripe virus associated with RT stripe disease of Sorghum bicolor in Andhra Pradesh, India"; RL Unpublished. XX RN [2] RP 1-2357 RA Srinivas K P Sreenivasulu.P.; RT ; RL Submitted (30-APR-2011) to the INSDC. RL Department of Virology, Sri Venkateswara University, Tirupati, Andhra RL Pradesh 517502, India XX DR MD5; 366fdd3e0cd2835f1e1726652ad7d339. XX FH Key Location/Qualifiers FH FT source 1..2357 FT /organism="Tenuivirus zeae" FT /segment="RNA3" FT /host="Sorghum bicolor" FT /isolate="MStV-SR-INDIA" FT /mol_type="genomic RNA" FT /country="India:Cuddapah, Andhra Pradesh" FT /collection_date="Nov-2009" FT /db_xref="taxon:3052767" FT 5'UTR 1..66 FT gene 67..660 FT /gene="NS3" FT CDS 67..660 FT /codon_start=1 FT /gene="NS3" FT /product="nonstructural protein 3" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:K4EQC2" FT /protein_id="AER38263.1" FT /translation="MNFYTSSVGVLQYDHSLLVMNDLTNIHVTCEDINCSAKLLCYMYD FT VYKSRYPSMDEHSFLRLLRGPDDAEILSTFLRTIIWILSHDRNFPDEFRIPATALVSAY FT IKYYSELKPRAPTTNCWTCRMSKNNLPFQVPSIKGFPAEAELYIVPISDHDGKTIEFSG FT MKTLYKSPSKKKHNYVISSDMPPLSARYTVWDGK" FT misc_feature 661..1313 FT /note="internal large noncoding spacer" FT gene complement(1314..2264) FT /gene="N/CP" FT CDS complement(1314..2264) FT /codon_start=1 FT /gene="N/CP" FT /product="nucleocapsid protein" FT /db_xref="GOA:J7FI44" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:J7FI44" FT /protein_id="AER38264.1" FT /translation="MATNKPANLNDLQKAINDISKDALKYLTDNKASVTTFHDQIGYAG FT YDAATLIGILKDKGGATLAQDVVKMIVMRYVRGTGFVKDVTKKTKATAGSEEAAALVAR FT YGLVSSVGSNANAITLGRVAQLFPNVSFEVTKQFSGLKMAIDSSDLSMPGTDSLLWDFV FT PQYITLDSSSAPYCTTKSINHILFSIHMIHAFLVTKKTMPETKKKERGLLKDIDMIKYT FT TGLLVITCQSKNLNEAKKKSGRTKVCDPFYVNEKIKESFLALLASFGKNVVCSYGTQVK FT QFLAEQCSLMKIMVDNSSKTQDEMKTAIVEFFEEE" FT 3'UTR 2265..2357 XX SQ Sequence 2357 BP; 707 A; 478 C; 396 G; 776 T; 0 other; acacaaagtc ctgggtaaaa aatattattt tttatcaata tatatattac ttctgtccat 60 cgaagcatga acttttacac atcatctgtt ggagtgctac agtatgacca ctctttgttg 120 gtcatgaatg atctcaccaa cattcatgtc acttgtgaag atatcaattg ctctgcaaag 180 cttctctgtt acatgtatga tgtctacaag tctaggtacc catctatgga tgagcactct 240 tttttgcgcc tactaagggg tccggatgat gcagagatac ttagtacttt cttgaggacc 300 atcatctgga tactatctca tgatagaaac tttccagatg agtttaggat cccagcaaca 360 gcacttgttt ctgcttatat taaatactat tcagagctga agccaagagc tcctacaact 420 aactgctgga cctgcaggat gtcgaaaaac aatctgcctt tccaagttcc ctcaatcaag 480 ggattccctg ctgaagcaga gctgtatata gttcctatct ctgatcatga tggaaagaca 540 atagagtttt caggaatgaa gacactatat aaatctccaa gcaagaaaaa acataattat 600 gttatttcat cagacatgcc tcctctcagt gctagataca ctgtctggga tggcaaataa 660 gatgaaaatt gtgaaaattt gtctctaggt atcagcggat aatgtaacta agttacattt 720 ttagaataac aaagtgtgct aggcacacta tccgaataat agtcggatga aggccttaac 780 ctaatttttt tgtttttttt tgtttttttg tttttttgtt tttttgtttt ttcatttttt 840 tggtttttta tatatataaa catgcataac acgacataag gtatgttatt attaactaca 900 ttacatacac gcactaataa tagtgaagat aagcacacaa gaactaaaac acaacaaaag 960 caatacaaat atataataga caatgttcaa tatattagaa aagcattacc atactactat 1020 gattagagct catgaatttt caacaccatc atcactacat gcacacacaa actttttttt 1080 ggtttttcat tttttggttt ttttgtcttt ttgacttttt tgattttttt gttttttaat 1140 tttttgattt ttttgttttt tagtttttgt cacacacaac aataatacac accaaacaac 1200 acacacaaat agaaaactac aatacatagt caacgcctca gcttcccaac aactgatcat 1260 ccttcccaac aaattttctc agtttatggt gaaatcacca tagcatggag agttcactcc 1320 tcttcgaaga actcaacgat tgcagtcttc atctcatctt gagttttgga gctgttgtcc 1380 accatgattt tcatcaagct acactgttct gccaagaact gtttgacttg ggtcccatag 1440 gagcaaacaa cattctttcc gaatgatgca agcagagcca agaaagactc cttgattttt 1500 tcattcacat agaatgggtc acacacctta gttctgccag acttcttttt tgcctcattg 1560 aggttcttag actggcaggt gataactagt agaccagtag tatactttat catgtcaatg 1620 tccttgagca gccctctctc tttcttctta gtctctggca ttgttttctt ggtgaccaag 1680 aaagcatgga tcatatgaat actaaagaga atatgattta tactcttagt agtgcaatat 1740 ggtgcagatg agctatcaag tgtaatatac tgagggacaa aatcccacag cagagagtca 1800 gttcccggca tactaagatc agaagaatca attgccatct taagaccaga gaactgtttg 1860 gtgacttcaa aagatacatt tggaaagagt tgagcaactc ttcccaatgt aatagcattc 1920 gcgttgctac ccacagatga cactagtcca tagcgtgcaa ctaaagctgc tgcctcctca 1980 ctgcccgcag ttgctttagt ctttttagta acatccttga caaaaccagt tcctctgaca 2040 tatctcatca caatcatctt aaccacatcc tgagcaagag ttgctccacc tttgtccttg 2100 agaattccaa ttagagtagc cgcatcatat cctgcatatc caatctgatc atgaaaagtg 2160 gtcacagacg ccttgttgtc agtgagatac ttcaaggcat ctttggaaat atcatttata 2220 gctttctgga gatcattaag atttgcaggc ttgttagtgg ccattgctct caaggggatt 2280 ggtgcaatgg ttatgcttta gacctttctt cagttgatca atacgaaatc gattaaacga 2340 ttacccagac tttgtgt 2357 //