ID   JF905486; SV 1; circular; genomic DNA; STD; VRL; 2816 BP.
XX
AC   JF905486;
XX
DT   07-AUG-2011 (Rel. 109, Created)
DT   24-FEB-2012 (Rel. 111, Last updated, Version 3)
XX
DE   Paspalum striate mosaic virus, complete genome.
XX
KW   .
XX
OS   Paspalum striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2816
RX   DOI; 10.1007/s00705-011-1129-2.
RX   PUBMED; 22009055.
RA   Geering A.D., Thomas J.E., Holton T., Hadfield J., Varsani A.;
RT   "Paspalum striate mosaic virus: an Australian mastrevirus from Paspalum
RT   dilatatum";
RL   Arch. Virol. 157(1):193-197(2012).
XX
RN   [2]
RP   1-2816
RA   Varsani A., Geering A.G., Thomas J.E., Hadfield J.;
RT   ;
RL   Submitted (01-MAY-2011) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch, New Zealand
XX
DR   MD5; 112fcf68f74aaaf4dcab78dafbbe858b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2816
FT                   /organism="Paspalum striate mosaic virus"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /isolation_source="Paspalum dilatatum"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:1072672"
FT   CDS             1..336
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:G1CSA4"
FT                   /db_xref="UniProtKB/TrEMBL:G1CSA4"
FT                   /protein_id="AEL29993.1"
FT                   /translation="MAEYPQSALIVSGAIPRRSQDESFATSLKVTALSLFAAFIAAAVL
FT                   TFIYKTCIADFITQFRLSGLSSVTSSGFGRTAEVPPAVPTRTASEVSIPVREAVSAPPL
FT                   VSSVVGV"
FT   CDS             342..1061
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:G1CSA5"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:G1CSA5"
FT                   /protein_id="AEL29994.1"
FT                   /translation="MAASSKRKRGSTSATKRRKKPRYTKWTSARSSNRDALQVQTFTWG
FT                   EDQAFNAGGRAILLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLC
FT                   WLVYDKSPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST
FT                   FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTADASDIKGGALYLVVAPANGLV
FT                   FTARGVIKVYFKSVGNQ"
FT   CDS             complement(join(1277..1675,1762..2457))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:G1CSA6"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:G1CSA6"
FT                   /protein_id="AEL29996.1"
FT                   /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFF
FT                   DIKEFHPNVQNPRMPKKALSYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMAEI
FT                   IKSSTNKEDYLSMVRKSFPFDWATRLQQFQFSAESLFPSTPPPYVDPFGMPSQDTHPVI
FT                   GAWLRDELYTDRSPTERRRSLYICGPTRTGKTSWARSLGSHNYWQHSVDFLHVIQNARY
FT                   NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPS
FT                   QADWFNANAVVHYMYSGESFFEAL"
FT   CDS             complement(1546..2457)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:G1CSA7"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:G1CSA7"
FT                   /protein_id="AEL29995.1"
FT                   /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFF
FT                   DIKEFHPNVQNPRMPKKALSYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMAEI
FT                   IKSSTNKEDYLSMVRKSFPFDWATRLQQFQFSAESLFPSTPPPYVDPFGMPSQDTHPVI
FT                   GAWLRDELYTVSPYAYSIHNGVSEEQAKLDLQWMSDLSRTEVLLNEDVPSTYVVQQEQE
FT                   RLLGQEVSEVITTGNIPWTSST"
XX
SQ   Sequence 2816 BP; 657 A; 695 C; 697 G; 767 T; 0 other;
     atggcggagt accctcagtc tgctttgatt gtttctggtg cgattccacg gcgaagccag        60
     gacgagagct ttgccacgtc tttgaaggtc actgctttat ctttatttgc agcatttatt       120
     gctgctgcag tcttgacatt catttacaag acttgcattg cggatttcat tacgcaattc       180
     cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgc tgaggttccg       240
     ccagctgtcc ctacaaggac agcgtctgag gtttcaattc ccgtaaggga agctgtttct       300
     gctcctcctt tggtttcttc cgtggttggt gtttagtttc catggcagct tcgtcgaaga       360
     ggaagcgcgg gagtacttcc gcaaccaagc ggcgcaagaa gccgcggtac acgaagtgga       420
     cctctgcccg cagctctaac agagatgcgc tgcaggtaca gaccttcacc tggggtgaag       480
     atcaggcgtt caacgccgga ggacgtgcga tacttctcac ggcctttacg cgtggttctg       540
     ccgagaacca acgcaaatcc caggagacca ttacatacaa ggttagtatt aaccttggtg       600
     tgtcagcatc tgctaccgtc ctcaagtact gctgcaagag ccagccatta tgctggctcg       660
     tatacgataa gtccccgact gggattacgg acctgacccc atcagacatc ttcgatgtgc       720
     cctcggggtt acagaactgg ccttccacct ggaaggtcaa acgagaagcg tctcatcgct       780
     tcgtcgtcaa acggcgttgg ccgttcacgt tatcatgcaa cgggagtacg ttccagaagg       840
     actacacaaa cctgcctgtc tgtaacacag acaacctggt gtctgtaacg aggttcgcca       900
     agggacttgg agtgcgaacg gagtggaagg acacaacgac agcggacgcg tcggacatca       960
     agggtggagc cctctacctt gtggtagccc ccgctaacgg gcttgtgttt acagcccgtg      1020
     gtgtaatcaa agtctacttt aagtcagtgg gcaaccagta gcccatttgt aatgagccca      1080
     tggggcgaac ttatgaaata aaatcttgca ttttattcat cgcattgaga tgcatgcgta      1140
     gcagcaaagc aaattacata actggttttg tgggtcgcga gggggaaccc ggagcacgca      1200
     cccaaaacac taaatgaaac acacccaaat aatctatctg aaaatgccgg acgaggactc      1260
     gcgaaggagt ccgagattac aaagcttcga agaagctttc acccgagtac atgtaatgta      1320
     cgactgcgtt agcattgaac cagtcagcct gactaggctg catttgttga agccagtctt      1380
     catcctcgtt cacgaggatt atgcatggaa tgccatttga cagcagccgt ttcttgccat      1440
     acttcggatt tactgtaatg tccttctggc ttccgacaag ccctttccaa caaggaacaa      1500
     atttaaacgg aatgtcatct atgacattat atcttgcatt ttgaattacg tggaggaagt      1560
     ccacggaatg ttgccagtag ttatgacttc cgagacttct tgcccaagaa gtctttcctg      1620
     ttcttgttgg accacatatg tagagggaac gtcttcgttc agtaggactt ctgtcctgct      1680
     tagatcagac atccattgga ggtcaagctt tgcttgttcc tccgaaacac cgttgtgtat      1740
     ggaatacgca taaggactta cagtgtataa ttcatctcgg agccatgctc cgataacagg      1800
     atgtgtatcc tgcgatggca tcccgaaggg atccacatac ggtggaggag tggaagggaa      1860
     cagcgattca gctgagaact gaaactgctg caaccttgtt gcccagtcga atgggaagga      1920
     tttccttacc atcgagagat agtcctcctt gtttgtggaa cttttaatga tttccgccat      1980
     ttttgcatcc ttcgtagaag gtgcgtccgc cttcttcttt ctcggacgct tgatttcctg      2040
     aaatacccca tattccgctt cggatattgg ggatttcttg cagtatgata atgccttctt      2100
     gggcattctt ggattttgaa catttggatg aaattctttg atgtcgaaga attttgcact      2160
     tgtagtgcgc acgtattttg agcattgtat tatacaatgc agatggtgag atccatcttt      2220
     atgtgcctct tgtgccacgt agatatacgt gggacagtat ttcttcaata aagaagaaat      2280
     atattccagg aggaatacag ccgtgaggtt gcacttactg tatgtgagga acaggttcct      2340
     cgctctcacc ttgaagcatg aagaggaggg ggcgtcgata gactgcccac cccttcctgg      2400
     gctctccatt tgactgccca cttcactgtt gcttgtctca ctgacaagtg aggacatctc      2460
     gtcagaagct atcgtggata gcttcaacgc ccttagatct tctttgagat ccgaggtttt      2520
     gaaaaactct cttcctagac cgctgccgac tgccgagttc tccccccgaa gcccttctta      2580
     tatgggccgg ggggcattgc tttccgtgtg ggccggcccg gtaaagaggc agcgcaataa      2640
     tattaccgct gccctcttta cccgagggcc ccatgctcaa cggggaccga ggtggctttg      2700
     cccgggcctt atcagcccac taagggctgt ttcccgcaat ctgatttcgt tttttgcttt      2760
     gactgacatt tctgctttgg atgcggcttt aaatagccgc atcgcactac tacgcc          2816
//