Dbfetch
ID JF905486; SV 1; circular; genomic DNA; STD; VRL; 2816 BP. XX AC JF905486; XX DT 07-AUG-2011 (Rel. 109, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 3) XX DE Paspalum striate mosaic virus, complete genome. XX KW . XX OS Paspalum striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2816 RX DOI; 10.1007/s00705-011-1129-2. RX PUBMED; 22009055. RA Geering A.D., Thomas J.E., Holton T., Hadfield J., Varsani A.; RT "Paspalum striate mosaic virus: an Australian mastrevirus from Paspalum RT dilatatum"; RL Arch. Virol. 157(1):193-197(2012). XX RN [2] RP 1-2816 RA Varsani A., Geering A.G., Thomas J.E., Hadfield J.; RT ; RL Submitted (01-MAY-2011) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch, New Zealand XX DR MD5; 112fcf68f74aaaf4dcab78dafbbe858b. XX FH Key Location/Qualifiers FH FT source 1..2816 FT /organism="Paspalum striate mosaic virus" FT /mol_type="genomic DNA" FT /country="Australia" FT /isolation_source="Paspalum dilatatum" FT /collection_date="2003" FT /db_xref="taxon:1072672" FT CDS 1..336 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:G1CSA4" FT /db_xref="UniProtKB/TrEMBL:G1CSA4" FT /protein_id="AEL29993.1" FT /translation="MAEYPQSALIVSGAIPRRSQDESFATSLKVTALSLFAAFIAAAVL FT TFIYKTCIADFITQFRLSGLSSVTSSGFGRTAEVPPAVPTRTASEVSIPVREAVSAPPL FT VSSVVGV" FT CDS 342..1061 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G1CSA5" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:G1CSA5" FT /protein_id="AEL29994.1" FT /translation="MAASSKRKRGSTSATKRRKKPRYTKWTSARSSNRDALQVQTFTWG FT EDQAFNAGGRAILLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLC FT WLVYDKSPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST FT FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTADASDIKGGALYLVVAPANGLV FT FTARGVIKVYFKSVGNQ" FT CDS complement(join(1277..1675,1762..2457)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:G1CSA6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G1CSA6" FT /protein_id="AEL29996.1" FT /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFF FT DIKEFHPNVQNPRMPKKALSYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMAEI FT IKSSTNKEDYLSMVRKSFPFDWATRLQQFQFSAESLFPSTPPPYVDPFGMPSQDTHPVI FT GAWLRDELYTDRSPTERRRSLYICGPTRTGKTSWARSLGSHNYWQHSVDFLHVIQNARY FT NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPS FT QADWFNANAVVHYMYSGESFFEAL" FT CDS complement(1546..2457) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:G1CSA7" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G1CSA7" FT /protein_id="AEL29995.1" FT /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFF FT DIKEFHPNVQNPRMPKKALSYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMAEI FT IKSSTNKEDYLSMVRKSFPFDWATRLQQFQFSAESLFPSTPPPYVDPFGMPSQDTHPVI FT GAWLRDELYTVSPYAYSIHNGVSEEQAKLDLQWMSDLSRTEVLLNEDVPSTYVVQQEQE FT RLLGQEVSEVITTGNIPWTSST" XX SQ Sequence 2816 BP; 657 A; 695 C; 697 G; 767 T; 0 other; atggcggagt accctcagtc tgctttgatt gtttctggtg cgattccacg gcgaagccag 60 gacgagagct ttgccacgtc tttgaaggtc actgctttat ctttatttgc agcatttatt 120 gctgctgcag tcttgacatt catttacaag acttgcattg cggatttcat tacgcaattc 180 cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgc tgaggttccg 240 ccagctgtcc ctacaaggac agcgtctgag gtttcaattc ccgtaaggga agctgtttct 300 gctcctcctt tggtttcttc cgtggttggt gtttagtttc catggcagct tcgtcgaaga 360 ggaagcgcgg gagtacttcc gcaaccaagc ggcgcaagaa gccgcggtac acgaagtgga 420 cctctgcccg cagctctaac agagatgcgc tgcaggtaca gaccttcacc tggggtgaag 480 atcaggcgtt caacgccgga ggacgtgcga tacttctcac ggcctttacg cgtggttctg 540 ccgagaacca acgcaaatcc caggagacca ttacatacaa ggttagtatt aaccttggtg 600 tgtcagcatc tgctaccgtc ctcaagtact gctgcaagag ccagccatta tgctggctcg 660 tatacgataa gtccccgact gggattacgg acctgacccc atcagacatc ttcgatgtgc 720 cctcggggtt acagaactgg ccttccacct ggaaggtcaa acgagaagcg tctcatcgct 780 tcgtcgtcaa acggcgttgg ccgttcacgt tatcatgcaa cgggagtacg ttccagaagg 840 actacacaaa cctgcctgtc tgtaacacag acaacctggt gtctgtaacg aggttcgcca 900 agggacttgg agtgcgaacg gagtggaagg acacaacgac agcggacgcg tcggacatca 960 agggtggagc cctctacctt gtggtagccc ccgctaacgg gcttgtgttt acagcccgtg 1020 gtgtaatcaa agtctacttt aagtcagtgg gcaaccagta gcccatttgt aatgagccca 1080 tggggcgaac ttatgaaata aaatcttgca ttttattcat cgcattgaga tgcatgcgta 1140 gcagcaaagc aaattacata actggttttg tgggtcgcga gggggaaccc ggagcacgca 1200 cccaaaacac taaatgaaac acacccaaat aatctatctg aaaatgccgg acgaggactc 1260 gcgaaggagt ccgagattac aaagcttcga agaagctttc acccgagtac atgtaatgta 1320 cgactgcgtt agcattgaac cagtcagcct gactaggctg catttgttga agccagtctt 1380 catcctcgtt cacgaggatt atgcatggaa tgccatttga cagcagccgt ttcttgccat 1440 acttcggatt tactgtaatg tccttctggc ttccgacaag ccctttccaa caaggaacaa 1500 atttaaacgg aatgtcatct atgacattat atcttgcatt ttgaattacg tggaggaagt 1560 ccacggaatg ttgccagtag ttatgacttc cgagacttct tgcccaagaa gtctttcctg 1620 ttcttgttgg accacatatg tagagggaac gtcttcgttc agtaggactt ctgtcctgct 1680 tagatcagac atccattgga ggtcaagctt tgcttgttcc tccgaaacac cgttgtgtat 1740 ggaatacgca taaggactta cagtgtataa ttcatctcgg agccatgctc cgataacagg 1800 atgtgtatcc tgcgatggca tcccgaaggg atccacatac ggtggaggag tggaagggaa 1860 cagcgattca gctgagaact gaaactgctg caaccttgtt gcccagtcga atgggaagga 1920 tttccttacc atcgagagat agtcctcctt gtttgtggaa cttttaatga tttccgccat 1980 ttttgcatcc ttcgtagaag gtgcgtccgc cttcttcttt ctcggacgct tgatttcctg 2040 aaatacccca tattccgctt cggatattgg ggatttcttg cagtatgata atgccttctt 2100 gggcattctt ggattttgaa catttggatg aaattctttg atgtcgaaga attttgcact 2160 tgtagtgcgc acgtattttg agcattgtat tatacaatgc agatggtgag atccatcttt 2220 atgtgcctct tgtgccacgt agatatacgt gggacagtat ttcttcaata aagaagaaat 2280 atattccagg aggaatacag ccgtgaggtt gcacttactg tatgtgagga acaggttcct 2340 cgctctcacc ttgaagcatg aagaggaggg ggcgtcgata gactgcccac cccttcctgg 2400 gctctccatt tgactgccca cttcactgtt gcttgtctca ctgacaagtg aggacatctc 2460 gtcagaagct atcgtggata gcttcaacgc ccttagatct tctttgagat ccgaggtttt 2520 gaaaaactct cttcctagac cgctgccgac tgccgagttc tccccccgaa gcccttctta 2580 tatgggccgg ggggcattgc tttccgtgtg ggccggcccg gtaaagaggc agcgcaataa 2640 tattaccgct gccctcttta cccgagggcc ccatgctcaa cggggaccga ggtggctttg 2700 cccgggcctt atcagcccac taagggctgt ttcccgcaat ctgatttcgt tttttgcttt 2760 gactgacatt tctgctttgg atgcggcttt aaatagccgc atcgcactac tacgcc 2816 //