ID JF831148; SV 1; circular; genomic DNA; STD; VRL; 2584 BP. XX AC JF831148; XX DT 01-AUG-2012 (Rel. 113, Created) DT 01-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Chickpea chlorotic dwarf virus isolate CpCDV-Cp-Ase.2, complete genome. XX KW . XX OS Chickpea chlorotic dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2584 RA Kunkalikar S.R., Gulhane S.N., Rajagopalan P.A., Anandalakshmi R.; RT "Molecular characterization of Chickpea chlorotic dwarf virus in India"; RL Unpublished. XX RN [2] RP 1-2584 RA Kunkalikar S.R., Gulhane S.N., Rajagopalan P.A., Anandalakshmi R.; RT ; RL Submitted (22-APR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna - RL Aurangabad road, Jalna, Maharashtra 431 203, India XX DR MD5; 6827a60fd485301503a51c98d2ba4121. XX FH Key Location/Qualifiers FH FT source 1..2584 FT /organism="Chickpea chlorotic dwarf virus" FT /host="chickpea" FT /isolate="CpCDV-Cp-Ase.2" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Suresh Kunkalikar" FT /collection_date="14-Mar-2011" FT /note="PCR_primers=fwd_name: mahyco-cpcdv-for, rev_name: FT mahyco-cpcdv-rev" FT /db_xref="taxon:463360" FT misc_feature join(2409..2584,1..131) FT /note="large intergenic region; LIR" FT gene 132..410 FT /gene="V1" FT CDS 132..410 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /db_xref="GOA:I6NY38" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:I6NY38" FT /protein_id="AFC17176.1" FT /translation="MERILYQIFPVDTNYSYDPPPVNTNSQGSSQTDFGKVVIALVVIL FT VSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPQP" FT gene 423..1160 FT /gene="V2" FT CDS 423..1160 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:B4ERB8" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B4ERB8" FT /protein_id="AFC17177.1" FT /translation="MSTVTWGNKRKRSDRSSKAKSKSSGSYVPRSVSSRRESLQVATFS FT WTSSGSGIKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTVYLDPSHYPKVFK FT CPFTFWLVYDKAPGASVPSTGDIFEGPSLFPANPWTWTVSRAACHRFVVKKTWSVVVES FT NGVDPGKAQSSSYYGPGPCNQIKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGA FT PSQKSDVYVNGYFRVYFKSVGNQ" FT gene complement(1318..2408) FT /gene="C1:C2" FT CDS complement(join(1318..1731,1818..2408)) FT /codon_start=1 FT /gene="C1:C2" FT /product="Rep A protein" FT /db_xref="GOA:I7BF47" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I7BF47" FT /protein_id="AFC17178.1" FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL FT GVATELHQDGTTHYHALIQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK FT LFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQEPRRTGARVPSLYICGPTRTGKTTW FT ARSLGRHNYWNGTIDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKK FT KIKGGVPSIILTNRDEDWIPAMSEHQKEYFTDNCEIHYMDDGETFFARESSSH" FT gene complement(1527..2408) FT /gene="C1" FT CDS complement(1530..2408) FT /codon_start=1 FT /gene="C1" FT /product="Rep protein" FT /db_xref="GOA:I6NQU7" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6NQU7" FT /protein_id="AFC17179.1" FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL FT GVATELHQDGTTHYHALIQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK FT LFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQVSIDAYTLIHPVSYQQAQSDLEWMA FT DLTRNREGLELESPASTSADQLVPERPPGLEASDDTTTGMGPSTSPPTTNTRRIMSLTT FT SRSSSSHCGSN" XX SQ Sequence 2584 BP; 662 A; 515 C; 646 G; 761 T; 0 other; accggcgtgg cccaccttat cgcgagcact tttgtgcgag cggttcagat ttaaagtgga 60 aaagttcccg cccactaggg tttgctttag cttttgcttt ataaaaggcg cactaattgg 120 tagaccgtag aatggaacgt attctgtatc agatatttcc tgtggatacg aattattcgt 180 atgatcctcc tcctgtgaat acgaattccc agggatcctc tcaaacggat ttcggaaagg 240 tggttatcgc cttggtggtt attctggtta gtgttggtgt gttctatctg gcttatagtc 300 tgttcttgaa ggattgtatc cttctgttca aggcgaagaa gcagaggacc accactgaaa 360 tcgggtttgg tcaaaccccg gctcgaaacc aggatcatcc tcaaccttag gcggggtgca 420 tcatgtcaac tgtgacgtgg ggaaacaaga ggaagcgcag cgataggtcc tcgaaggcga 480 agagtaagtc ctctgggtct tatgtgccca gatctgtgtc ctccaggagg gaatcgttgc 540 aggtggctac cttttcctgg accagttctg gttcgggtat caaattctct actggtggtg 600 ctgcctacct tgtgagtaat tttccacagg gtgccaacga taactgtcgt cacaccaaca 660 agaccgtgct atacaaattc atggccaaga atacggtgta cttggaccct agtcattatc 720 ctaaggtctt taagtgcccg ttcacctttt ggctggtgta cgacaaggct cctggtgcaa 780 gtgttcctag tactggggac atatttgaag gcccctctct atttcctgct aatccttgga 840 cgtggactgt gtctagggct gcctgccatc gttttgttgt caagaaaacg tggtcagtgg 900 tggtggagag caatggtgtt gatccaggaa aggcccaatc cagttcttat tatgggcctg 960 gaccttgtaa tcagattaag tcctgcaata agttctttaa gaggctgggt gtgtcaacgg 1020 agtggaaaaa tagttccacg ggggatgttg gtgatataaa ggaaggagcc ctttacattg 1080 taggtgctcc ttcccagaag tctgatgtat atgtaaatgg ttatttccga gtgtacttca 1140 agtccgttgg caatcaataa aaatttatta ttatgaatat tttacattgt gcaagtaggt 1200 agaaattcaa tatgttacat tacacacgaa ataagcaaaa aaacacacct aaaacaaaag 1260 tacactaccc acgataactt ataactttag cttaaccccg tatgaggaga ggcacgttca 1320 gtgactcgac gattcccggg caaaaaaagt ttcgccgtca tccatataat ggatctcaca 1380 attgtctgta aagtattctt tctgatgctc agacatagca ggaatccagt cctcatctct 1440 atttgttaaa attatggaag ggacaccacc ttttattttc ttcttttttc catacttagg 1500 gttgacagtg aagtcgaact ggcaacctat taattgcttc cacaatggga cgaacttgaa 1560 cgggatgtcg tcaatgacat tatacgtcgc gtgttcgtcg taggtggtga agtcgatggt 1620 cccattccag tagttgtgtc gtccgaggct tctagcccag gtggtctttc cggtacgagt 1680 tggtccgcag atgtagaggc tggggactct agctccagtc cttctcggtt cctggttaga 1740 tcggccatcc attcaaggtc agattgagct tgctgatatg aaactggatg gataagagtg 1800 taggcgtcga tgcttacttg gtacaggtgt gtatccctcc attgtgctag atcctcatgg 1860 cagcggagat ctgactcagt gaacggcgac acatatgctt caggttgtgg agggaatagc 1920 ttgtttgcgg agtattcaag ccattgaagc ttggtagccc attcatgtgg gaactcctcc 1980 ttgatcatgt caagatattc ctccttagac gttgcagtct ggataatagt tcgccatcgt 2040 gcgtcagatt tgcgaggaga gactttatga tctctgaaat ctcctcttgt tttaatatct 2100 ccgtccttgg atatgtattc aaggacttgt ttagagtttc tagctggctg gatattaggg 2160 tgatttcctt caaaatcgaa aaaagaagga tccctaatcc aaggtttttt atcaagctgg 2220 ataagagcat gatagtgggt agtgccatct tgatgaagct cagtagcaac accaaggaag 2280 aaaataagaa aaggtgtgag tttctcccag agaaactcga ataaatcatc tctttgagat 2340 gagcatttag ggtaggtaag gaaaacatat tttgattgga atctgaagtt cttgtttgca 2400 gaaggcatgt ttgttgtgac tccaagggtt ggcttgaaac tctatcttat aaccggcgtg 2460 gagacttgta gacaagggta ttttggtcat ttaggctggg tagtggaata atgacatggc 2520 agtgacttaa agacgaagtc ttttcgaaag cgaatatggg gggagccacg gcgaaactaa 2580 tatt 2584 //