ID JF825867; SV 1; linear; genomic DNA; STD; VRL; 1627 BP. XX AC JF825867; XX DT 02-OCT-2011 (Rel. 110, Created) DT 02-OCT-2011 (Rel. 110, Last updated, Version 1) XX DE Tobacco curly shoot virus isolate COB-6 pre-coat protein (AV2), coat DE protein (AV1), replication enhancer protein (AC3), and transcription DE activator protein (AC2) genes, complete cds; and replication associated DE protein (AC1) gene, partial cds. XX KW . XX OS Tobacco curly shoot virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-1627 RA Saha A., Saha B., Saha D.; RT "Geminiviruses infecting cultivated tomato plants of sub-Himalayan plains RT of northeast India: occurrence, detection, host range and diversity RT analysis"; RL Unpublished. XX RN [2] RP 1-1627 RA Saha B., Saha D., Saha A.; RT ; RL Submitted (21-APR-2011) to the INSDC. RL Dept. of Botany, University of North Bengal, Rajarammohanpur, Siliguri, RL West Bengal 734013, India XX DR MD5; 1b30ddc6dfbd20accac64f32a19e8857. XX FH Key Location/Qualifiers FH FT source 1..1627 FT /organism="Tobacco curly shoot virus" FT /segment="DNA-A" FT /host="Lycopersicon esculentum L." FT /isolate="COB-6" FT /mol_type="genomic DNA" FT /country="India:West Bengal" FT /collected_by="Bikram Saha" FT /collection_date="Nov-2010" FT /PCR_primers="fwd_seq: taatattacckgwkgvccsc, rev_seq: FT tggacyttrcawggbccttcaca" FT /PCR_primers="fwd_seq: atgkcsaagcgwccrgcaga, rev_seq: FT ttwaraatgtaawwkgagcag" FT /PCR_primers="fwd_seq: acnggnaaracnatgtgggc, rev_seq: FT ggnaarathtggatgga" FT /db_xref="taxon:180526" FT gene 111..458 FT /gene="AV2" FT CDS 111..458 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:G4XKM8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G4XKM8" FT /protein_id="AEP25612.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICDPCCCPHCPRHQIKSMGEQAHEQ FT KAEDVQDVQKS" FT gene 271..1041 FT /gene="AV1" FT CDS 271..1041 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G3FAX1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G3FAX1" FT /protein_id="AEP25613.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVIRAAAPIVRVTKSRAWA FT NRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1038..1442) FT /gene="AC3" FT CDS complement(1038..1442) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:G4XKN0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G4XKN0" FT /protein_id="AEP25614.1" FT /translation="MDSRTGELITAAQAVNGVYIWEIQNPFYVKIIEHQNRPFVMKEDI FT ITSQIQFKYNMRKAQGVHKCLVVYGMWMTSQHQTGRFLRVFKTQVLKFFNNLGVISMNN FT AIRAVDHVLWNRLQHIVYVDQSYSIKFNIY" FT gene complement(1183..1587) FT /gene="AC2" FT CDS complement(1183..1587) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:G4XKN1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G4XKN1" FT /protein_id="AEP25615.1" FT /translation="MRSSSPSKAHSTQVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSSGEWRVYMGDSKSLLCQDNRAPEPSICNEGRHNHESNTVQIQH FT EESSGSAQVSCSIRNVDDFTASDWSFLKGL" FT gene complement(1490..>1627) FT /gene="AC1" FT CDS complement(1490..>1627) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="UniProtKB/TrEMBL:G4XKN2" FT /protein_id="AEP25616.1" FT /translation="EEKNTALKNWALKNAIFVTLESPLYSGSNQSEAQASQEGEQTSSC FT " XX SQ Sequence 1627 BP; 460 A; 324 C; 350 G; 493 T; 0 other; aaagtgggcc ccttgatgtg atatgtcatc caatcagaac gctcccccaa agcttaattg 60 tcttgtggtc ccttatttaa acttgctcac caagtagtgc actccgcact atgtgggatc 120 cattagtaaa cgagtttccc gaaaccgttc acggctttag gtgtatgtta gcagttaaat 180 atctgcagtt agtagagaag acttattcgc ctgacacatt agggcacgat ttaattaggg 240 atttaatttc agttattagg gctagaaatt atgtcgaagc gaccagcaga tataatcatt 300 tccacgcccg cttcgaaggt acgccgccgt ctcaacttcg acagcccata tgtgatccgt 360 gctgctgccc ccattgtccg cgtcaccaaa tcaagagcat gggcgaacag gcccatgaac 420 agaaagccga agatgtacag gatgtacaga agtcctgatg tccctagagg atgtgaaggc 480 ccatgtaagg tccagtcgtt tgagtctaga catgacattc agcatatagg taaagttatg 540 tgtatcagtg atgttacgcg tggaactggg ctgacccatc gagtgggtaa aaggttttgt 600 gttaaatccg tttatgtctt gggtaagatc tggatggatg aaaatattaa gaccaagaat 660 cacactaaca gtgttatgtt ttttttagtt agggatcgta ggcctgtgga taaacctcaa 720 gattttggag aggtttttaa catgtttgat aatgagccca gtacggctac tgtgaagaat 780 gttcatcgtg ataggtatca agtgcttcgc aaatggcatg caactgttac gggtggacaa 840 tatgcgtcaa aggaacaagc ccttgtgaag aaatttgtta gggttaataa ttatgttgtg 900 tataaccagc aagaagctgg caagtatgaa aatcattctg agaatgcgtt aatgttgtat 960 atggcatgta ctcatgcctc taacccagtg tatgctactt tgaagatacg gatctatttc 1020 tatgattccg taacaaatta ataaatgtta aattttattg aataagattg gtctacatat 1080 acaatgtgtt gcaatctatt ccataataca tgatcaactg ctcgaattgc attattcata 1140 ctaattacac ccaaattatt aaaaaacttc aaaacttgag tcttaaagac ccttaagaaa 1200 cgaccagtct gatgctgtga agtcatccac attccgtata ctacaagaca cttgtgcact 1260 ccctgagctt tcctcatgtt gtatttgaac tgtatttgac tcgtgattat gtcttccttc 1320 attacaaatg gacggttctg gtgctctatt atcttgacat aaaagggatt ttgaatctcc 1380 catatataca cgccattcac cgcttgagct gcagtgatga gttcccctgt gcgtgaatcc 1440 atgatcgtga catgctagtg ctatgaaata tgaacatcca caagggagat caacacgacg 1500 acgtctgttc cccttcttgg ctagcctgtg cttcactttg attggaacct gagtagagtg 1560 ggctttcgag ggtgacgaag atcgcattct ttaaagccca atttttaagt gctgtatttt 1620 tctcttc 1627 //