ID JF809616; SV 1; circular; genomic DNA; STD; VRL; 8041 BP. XX AC JF809616; XX DT 17-MAY-2012 (Rel. 112, Created) DT 17-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Cauliflower mosaic virus isolate W260, complete genome. XX KW . XX OS Cauliflower mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Caulimovirus. XX RN [1] RP 1-8041 RA Froissart R.; RT ; RL Submitted (15-APR-2011) to the INSDC. RL Laboratoire 'Maladies Infectieuses & Vecteurs : Ecologie, Genetique, RL Evolution & Controle' (MIVEGEC), Centre National de la Recherche RL Scientifique (CNRS), 911 Avenue Agropolis, Montpellier 34394, France XX DR MD5; b9ad75138006e02b4cc5a06d9cae3e7e. DR EuropePMC; PMC4498817; 26162084. DR EuropePMC; PMC5356058; 28302781. XX FH Key Location/Qualifiers FH FT source 1..8041 FT /organism="Cauliflower mosaic virus" FT /host="Brassicaceae" FT /isolate="W260" FT /mol_type="genomic DNA" FT /country="Argentina" FT /collected_by="Gracia O & Shepherd RJ" FT /collection_date="1985" FT /db_xref="taxon:10641" FT CDS 364..1347 FT /codon_start=1 FT /product="movment protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:I1W6B1" FT /protein_id="AFI61738.1" FT /translation="MDLYPEENTQSEQSHNSENNMQIFKSENSDGFSSDLMISNDQLKN FT ISKTQLTLEKEKIFKMPNVLSQVMKKAFSRKNEILYCVSTKELSVDIHDATGKVYLPLI FT TKEEINKRLSSLKPEVRRTMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRKDC FT LLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLIHDFENKNLMNKGDKVMTITYI FT VGYALTNSHHSIDYQSNATIELEDVFQEIGNVQQSEFCTIQNDECNWAIDIAQNKALLG FT AKTKSQIGNSLQIGNSASSSNTENELARVSQNIDLLKNKLKEICGE" FT CDS 1349..1828 FT /codon_start=1 FT /product="aphid transmission factor-helper component" FT /db_xref="GOA:I1W6B2" FT /db_xref="InterPro:IPR004917" FT /db_xref="UniProtKB/TrEMBL:I1W6B2" FT /protein_id="AFI61739.1" FT /translation="MSITGQPHVYKKDTIIRLKPLSLNSNNRSYVFSSSKGNIQNIINH FT LNNLNEIVGRSLLGIWKINSYFGLSKDPSESKSKNPSVFNTAKTIFKSGGVDYSSQLKE FT IKSLLEAQNTRIKNLEKAVQALDNKIEPEPLTKEEVKELKESINSIKEGLKNIIG" FT CDS 1830..2219 FT /codon_start=1 FT /product="virus associated protein" FT /db_xref="GOA:I1W6B3" FT /db_xref="InterPro:IPR004986" FT /db_xref="UniProtKB/TrEMBL:I1W6B3" FT /protein_id="AFI61740.1" FT /translation="MANLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETV FT AAKIVNDLTKLINDCPCNKEILEALGNQPKEQLIEQPKEKGKGLNLGKYSYPNYGVGNE FT ELGSSGNPKALTWPFKAPAGWPNQF" FT CDS 2201..3664 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:I1W6B4" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:I1W6B4" FT /protein_id="AFI61741.1" FT /translation="MAESILDRTINRFWYNLGEDCLSESQFDLMIRLMEESLDGDQIID FT LTSLPSDNLQVEQVMTTTEDSISEESEFLLAIGETSEDESDSGEEPEFEQVRMDRTGGT FT EIPKEEDGEGPSRYNERKRKTPEDRYFPTQPKTIPGQKQTSIGMLNIDCQANRRTLIDD FT WAAEIGLIVKTNREDYLDPETILLLMEHKTSGIAKELIRNTRWNRTTGDIIEQVIDAMY FT TMFLGLNYSDNKVAEKIEEQEKAKIRMTKLQLCDICYLEEFTCDYEKNMYKTELADFPG FT YINQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSKICDLTKKQKKLKKF FT NKKCCSIGEASVEYGCKKTSKKKYHKRYKKKYKVYKPYKKKKKFRSGKYFKPKEKKGSK FT QKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAENLGLQPIEEPYEGVQEV FT FILEYKEEEEETSTEESDGSSTSEDSDSD" FT CDS 3627..5666 FT /codon_start=1 FT /product="reverse transcriptase" FT /db_xref="GOA:I1W6B5" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:I1W6B5" FT /protein_id="AFI61742.1" FT /translation="MDHLLLKTQTQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFVD FT TGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAGEIFKIPTVY FT QQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMK FT KRSKTQQPEPVNISTNKIENPKEEIAILSEGRRLAEEKLFITQQRMQKIEELLEKVCSE FT NPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP FT HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFD FT CKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCC FT VYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHK FT PQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWT FT KEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELIC FT RYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG FT DSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS" FT CDS 5770..7332 FT /codon_start=1 FT /product="transactivator" FT /note="TAV" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/TrEMBL:I1W6B6" FT /protein_id="AFI61743.1" FT /translation="MENIEKLLMQEKILMLELDLVRAKISLARANGSSQQGDLPLHRET FT PVKEEAVHSALATFTPSQVKAIPEQTAPGKESTNPLMASILPKDMNPVQTGMRLTVPGD FT FLRPHQGIPIPRKSELSSTVAPLRAESGIQHPHINYYVVYNGPHAGIYDDWGCTKAATN FT GVPGVAHKKFATITEARAAADAYTTSQQTDRLNFIPKGEAQLKPKSFAKALTSPPKQKA FT HWLTLGTKKPSSDPAPKEISFDPEITMDDFLYLYDLVRKFDGEGDDTMFTTDNEKISLF FT NFRKNANPQMVREAYAAGLIKTIYPSNNLQEIKYLPKKVKDAVKRFRTNCIKNTEKDIF FT LKIRSTIPVWTIQGLLHKPRQVIEIGVSKKLVPTESKAMESKIQIEDLTELAVKTGEQF FT IQSLLRLNDKKKIFVNMVEHDTLIYSKNIKETVSEDQRAIETFQQRVISGNLLGFHCPA FT ICHFIVKIVEKEGGTYQCHHCDKGKAIVKDASADSGPKDGPPPTRSIVEKEDVPTTSSK FT QVD" XX SQ Sequence 8041 BP; 2950 A; 1657 C; 1568 G; 1866 T; 0 other; ggtatcagag ccatgaatag gtctatgacc aaaactcaag aggataaaac ctcaccaaaa 60 taccaaagag ttcttaactc taaagataaa agatctttca agatcaaaaa tagttccctc 120 acaccggtga ccgacaggtt taccaccgta aggtttcaga acaacatcga atgcgtttac 180 gccaacttcg actctcagct caagtcgtcg tacgatggta gatctaaaaa gatcaagaat 240 ctaagcctta aaaatcttag atgctacgaa gccttcctca ggaagtacct tctggaacaa 300 taaatctctc tgagaatagt actctaacga gtatccacag ataaaataat cttctgtgtt 360 gagatggatt tgtatccaga ggaaaatacc caaagcgagc aatcgcataa ttctgaaaat 420 aatatgcaaa tatttaaatc agaaaattcg gatggattct cttccgatct aatgatctca 480 aacgatcaat taaaaaatat ctctaaaacc caattgacat tggagaaaga aaagatattt 540 aaaatgccta acgttttatc tcaagttatg aaaaaagcgt ttagcaggaa aaacgagata 600 ctttactgcg tctcgacaaa agaattatcg gtggacattc acgatgccac aggtaaggta 660 tatcttcctt taatcactaa agaggagata aataaaagac tttccagctt aaaacctgaa 720 gtcagaagaa ccatgtccat ggtccacttg ggcgcggtta aaatattgct taaagctcaa 780 tttcgaaatg ggattgatac cccaatcaaa attgctttaa tcgatgatag aatcaattct 840 agaaaagatt gccttctcgg tgcagccaaa ggtaatctag catacggtaa gtttatgttt 900 actgtatacc ccaagtttgg aataagcctt aatacccaaa gacttaacca aaccctaagc 960 cttattcatg attttgagaa taaaaatctt atgaataaag gtgataaagt tatgaccata 1020 acctatattg taggatatgc attaaccaat agtcatcata gcatagatta tcaatcgaat 1080 gctacaattg aactagaaga cgtatttcaa gaaattggaa atgtccagca atctgagttc 1140 tgtacaatac agaatgatga atgcaattgg gccattgata tagcccaaaa caaagcctta 1200 ttaggagcta aaaccaaatc ccaaattggt aatagtcttc aaataggaaa cagtgcttca 1260 tcctctaata ctgaaaatga attagctagg gtaagccaga acatagatct tttaaagaat 1320 aaattaaaag aaatctgtgg agaataatat gagcattacg ggtcaaccgc atgtttataa 1380 aaaagatact attattagac taaaaccatt gtctcttaat agtaataata gaagttatgt 1440 ttttagttcc tcaaaaggga atattcaaaa tataattaat catcttaaca acctcaatga 1500 gattgtagga agaagcttac tcggaatatg gaagatcaac tcatacttcg gactaagcaa 1560 agacccttcg gagtccaaat caaaaaaccc gtcagttttt aatactgcaa aaaccatttt 1620 taagagtggg ggggttgatt actcgagcca attaaaggaa ataaaatccc ttttagaagc 1680 tcaaaatact agaattaaaa atctagaaaa agcagttcaa gccttagata ataagattga 1740 accagagccc ttaactaaag aagaagttaa agaacttaaa gaatcgatta actcgatcaa 1800 agaaggatta aagaatatta ttggctgaaa tggctaatct taatcaaatc caaaaagaag 1860 tctctgagat cctcagtgac caaaaatcca tgaaagcgga tataaaagct atcttagaat 1920 tattaggatc ccaaaatcct attaaagaaa gcttagaaac cgttgcagcg aaaatcgtta 1980 atgacttaac caagctcatc aatgattgtc cttgtaacaa agagatatta gaagccttag 2040 gcaatcagcc taaagagcaa ctaattgaac aacctaaaga aaaaggcaaa ggccttaatc 2100 taggaaaata ctcttacccc aattacggag taggaaatga agaattagga tcctctggaa 2160 accctaaagc tttaacctgg cccttcaaag ctccagcagg atggccgaat caattttaga 2220 caggaccatt aaccggttct ggtataatct gggagaagat tgtctctcag aaagtcaatt 2280 cgatcttatg atcagattaa tggaagagtc ccttgacggg gaccaaatta ttgatctaac 2340 ctctctacct agtgataatt tgcaggtcga acaggttatg acaactaccg aagactcgat 2400 ctcggaagaa tcagaattcc ttctagcaat aggagaaaca tctgaagacg aaagcgattc 2460 aggagaagaa cctgaattcg agcaagttcg aatggaccga acaggaggaa cggagattcc 2520 caaagaagaa gatggtgaag gaccatcaag atacaatgag agaaagagaa agaccccgga 2580 ggaccggtac tttccaactc aaccaaagac cattccagga caaaagcaga cgtccatagg 2640 aatgctcaac atcgactgcc aagccaatcg aagaacttta atcgatgact gggcagcaga 2700 aatcggattg atagtcaaga ccaatagaga agactatctt gatccagaaa caattctact 2760 cttgatggaa cacaaaacat caggaatagc caaggagtta atccgaaata caagatggaa 2820 ccgcactacc ggcgacatca tagaacaggt gatcgatgcg atgtacacca tgttcttagg 2880 actaaactac tccgacaaca aggttgctga gaagattgaa gagcaagaga aggccaagat 2940 cagaatgacc aagctccagc tctgcgatat ctgctacctt gaagaattta catgtgatta 3000 tgaaaagaac atgtacaaga cagaactggc ggatttccca ggatatatca accagtacct 3060 gtcaaaaatc cccatcattg gagaaaaagc gttaacacgc tttagacatg aagccaatgg 3120 aaccagcatc tacagcttag gtttcgcggc aaagatagta aaagaagaac tatctaaaat 3180 ctgcgactta accaagaagc agaagaagtt gaagaaattc aacaagaagt gctgtagcat 3240 cggagaagct tcagtagaat atggatgcaa gaagacatcc aagaagaagt atcataaaag 3300 atacaagaaa aaatataagg tctataaacc ttataagaag aagaagaaat tccgttccgg 3360 aaaatacttc aagcccaaag agaagaaggg ctcaaagcaa aaatattgcc caaaaggcaa 3420 gaaagattgc agatgttgga tctgcaatat cgaaggccat tacgccaacg aatgtcctaa 3480 tcgacaaagc tcggagaagg ctcatatcct tcaacaagca gaaaatttgg gtctacagcc 3540 cattgaagaa ccctatgaag gagttcaaga agtattcatc ttagaataca aagaagagga 3600 agaagaaacc tctacagaag aaagtgatgg atcatctact tctgaagact cagactcaga 3660 ctgagcaggt gatgaacgtc accaatccca attcaatcta catcaaggga agactctact 3720 tcaaaggata caagaagata gagcttcatt gtttcgtaga cacgggagca agcttatgca 3780 tagcatccaa gttcgtcatt ccagaagaac attgggtcaa tgcagaaaga ccaataatgg 3840 tcaaaatagc agatggaagc tcaatcacca tcagcaaagt ctgcaaagac atagacttga 3900 tcatagccgg cgagatattc aaaattccca ccgtctatca gcaagaaagt ggtatcgatt 3960 tcataatcgg caacaacttc tgtcagctgt atgaaccatt cattcagttt acagatagag 4020 ttatcttcac aaagaacaag tcctatcctg ttcatattgc gaagctaaca agagcagtgc 4080 gagtaggcac cgaaggattt cttgaatcaa tgaagaaacg ttcaaagact caacaaccag 4140 agccagtgaa catttctaca aacaagatag aaaatccaaa agaagaaatt gctattcttt 4200 cagaggggag gaggttagca gaagaaaaac tcttcatcac tcaacaaaga atgcaaaaaa 4260 tcgaagaact acttgagaaa gtatgttcag aaaatccatt agatcctaac aagactaagc 4320 aatggatgaa agcttcaatc aagctcagcg acccaagcaa agctatcaag gttaaaccca 4380 tgaagtatag cccaatggat cgtgaagaat ttgacaagca aatcaaagag ttactggacc 4440 taaaagtcat taagcccagt aaaagccctc acatggcacc agccttcttg gtcaataatg 4500 aagccgagaa gcgaagagga aagaagcgta tggtagtcaa ctacaaggct atgaacaaag 4560 ccaccatagg agacgcatac aatcttccca ataaagacga gttactgaca cttattcgag 4620 gaaagaagat cttctcttcc ttcgactgca agtcaggttt ctggcaggtt ctgctagatc 4680 aagaatcaag acctctaacg gcattcacat gtccccaagg tcactacgaa tggaatgtgg 4740 tccctttcgg cctaaagcag gctccatcca tattccaaag acacatggac gaagcatttc 4800 gtgtgttcag gaagttctgt tgcgtgtatg tcgacgacat tctcgtattc agtaacaacg 4860 aagaagatca cctacttcac gtagcaatga tcttacaaaa gtgcaatcaa catggaatca 4920 tcctttccaa gaagaaagca caactcttca aaaagaagat aaacttcctt ggtctagaaa 4980 tagatgaagg aacacataag cctcaaggac atatcttgga acacatcaac aaattcccag 5040 atacccttga agacaagaag caacttcaga gattcttagg catactaaca tatgcctcgg 5100 attatatccc gaagctagct caaatcagaa agcctctgca agccaagctt aaggagaacg 5160 ttccatggaa atggacgaaa gaggacaccc tctacatgca aaaggtgaag aaaaatctgc 5220 aaggatttcc tccactacat catcccttac cagaagagaa gctgatcatc gagaccgacg 5280 catcagacga ctactgggga ggtatgttaa aagctatcaa aattaacgaa ggtactaata 5340 ctgagttaat ttgcagatac gcatctggaa gctttaaagc tgcagaaaag aattaccaca 5400 gcaatgacaa agaaacattg gcggtaataa atactataaa gaaattcagt atttatctaa 5460 ctcctgttca tttcttaatc aggacagata atacgcattt caagagtttt gttaacctta 5520 attacaaagg tgattcaaaa cttggaagaa acatcagatg gcaagcatgg cttagccact 5580 attcatttga tgttgaacac attaaaggaa ccgacaacca ctttgcggac ttcctttcaa 5640 gagaattcaa taaggttaat tcctaattga aatccgaaga taagattccc acacacttgt 5700 ggctgatatc aaaaggctac tgcctatata aacacatctc tggagactga gaaaatcaga 5760 cctccaagca tggagaacat agaaaaactc ctcatgcaag agaaaatact aatgctagag 5820 ctcgatctag taagagcaaa aataagctta gcaagagcta acggctcttc gcaacaagga 5880 gacctccctc tccaccgtga aacaccggta aaagaagaag cagttcactc tgcactggct 5940 acttttacgc catctcaagt aaaagctatt ccagagcaaa cggctcctgg taaagaatca 6000 acaaatccgt tgatggctag tatcttgcca aaagatatga acccagttca gactgggatg 6060 aggcttacag tgccagggga ctttttacgt cctcatcagg gaattccaat cccacgaaaa 6120 tctgagctta gcagcacagt tgctcctctc agggcagaat cgggtattca acaccctcat 6180 atcaactact acgttgtgta taacggtcca cacgccggta tatacgatga ctggggttgt 6240 acaaaggcgg caacaaacgg tgttcccgga gttgcacata agaagtttgc cactattaca 6300 gaggcaagag cagcagctga cgcatataca acaagtcagc aaacagatag gttgaacttc 6360 atccccaaag gagaagctca actcaagccc aaaagctttg ccaaggctct caccagccca 6420 ccaaagcaaa aagcccactg gctcacgcta ggaaccaaaa agcccagcag tgatccagcc 6480 ccaaaagaga tctccttcga cccggagatc acaatggacg acttcctcta tctctatgat 6540 ctagtcagga agttcgacgg agaaggtgac gataccatgt tcaccactga taatgagaag 6600 attagcctct tcaatttcag aaagaacgct aacccacaga tggttagaga ggcctacgca 6660 gcaggtctca tcaagacgat ctacccgagc aataatctcc aggagatcaa ataccttccc 6720 aagaaggtta aagatgcagt caaaagattc aggactaact gcatcaagaa cacagagaaa 6780 gatatatttc tcaagatcag aagtactatt ccagtatgga cgattcaagg cttgcttcat 6840 aaaccaagac aagtaataga gatcggagtc tctaagaaat tagttcctac agagtctaag 6900 gccatggagt caaagattca aattgaggac ctaacagaac tcgccgtgaa gactggcgaa 6960 cagttcatac agagtctctt aagactcaat gacaagaaga aaatcttcgt caacatggtg 7020 gagcacgaca ctctgatcta ctccaaaaat atcaaagaaa cagtctcaga agaccaaagg 7080 gcaattgaga ctttccaaca aagggtaata tcgggaaacc tcctcggatt ccattgccca 7140 gctatctgtc actttattgt gaagatagtg gaaaaggaag gtggcaccta ccaatgccat 7200 cattgcgata aaggaaaggc tatcgttaaa gatgcctctg ccgacagtgg tcctaaagat 7260 ggacccccac ccacgaggag catcgtggaa aaagaagacg ttccaaccac gtcttcaaag 7320 caagtggatt gatgtgacat ctccactgac gtaagggatg acgcacaatc ccactatcct 7380 tcgcaagacc cttcctctat ataaggaagt tcatttcatt tggagaggac acacaaaaaa 7440 aaacacaaaa aaatcaccag tctctctcta caaatctatc tctctctatt ttctccataa 7500 taatgtgtga gtagttccca gataagggaa ttagggttct tatagggttt cgctcatgtg 7560 ttgagcatat aagaaaccct tagtatgtat ttgtatttgt aaaatacttc tatcaataaa 7620 atttctaatt cctaaaacca aaatccagta ctaaaatcca gatctcctaa agtccctata 7680 gatctttgtg gtgaatataa accagacacg agacgactaa acctggagcc cagacgccgt 7740 ttgaagctag aagtaccgct taggcaggag gccgttaggg aaaagatgct aaggcagggt 7800 tggttacgtt gactcccccg taggtttggt ttaaatatca tgaagtggac ggaaggaagg 7860 aggaagacaa ggaaggataa ggttgcaggc cctgtgcaag gtaagaagat ggaaatttga 7920 tagaggtacg ttactatact catactatac gctaagggaa tgcttgtatt taccctatat 7980 accctaataa ccccttatcg atttaaagaa ataatccgca taagcccccg cttaaaaaat 8040 t 8041 //