ID   JF803842; SV 1; linear; genomic RNA; STD; VRL; 1960 BP.
XX
AC   JF803842;
XX
DT   01-JAN-2013 (Rel. 115, Created)
DT   01-JAN-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Cotton bunchy top virus RdRp gene, partial cds; coat protein and movement
DE   protein genes, complete cds; and aphid transmission protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cotton bunchy top virus
OC   Viruses; Riboviria; Luteoviridae; unclassified Luteoviridae.
XX
RN   [1]
RP   1-1960
RA   Ellis M.H., Silva T.F., Stiller W.N., Wilson L.J., Vaslin M.F.S.,
RA   Sharman M., Llewellyn D.J.;
RT   "Identification of a new Polerovirus (family Luteoviridae) associated with
RT   cotton bunchy top disease in Australia";
RL   Unpublished.
XX
RN   [2]
RP   1-1960
RA   Ellis M.H., Silva T.F., Stiller W.N., Wilson L.J., Vaslin M.F.S.,
RA   Sharman M., Llewellyn D.J.;
RT   ;
RL   Submitted (13-APR-2011) to the INSDC.
RL   Plant Industry, CSIRO, Clunies Ross St, Canberra, ACT 2601, Australia
XX
DR   MD5; 38d1a8e3ca7fd0a5dbb98c2c788218ac.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1960
FT                   /organism="Cotton bunchy top virus"
FT                   /isolate="Narrabri"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:1166555"
FT   CDS             <1..579
FT                   /codon_start=1
FT                   /product="RdRp"
FT                   /note="ORF2"
FT                   /db_xref="GOA:K9LG98"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:K9LG98"
FT                   /protein_id="AFJ19356.1"
FT                   /translation="SVADWMLADEMEVRNRLTVHNNALTRRLRACWLKCISNSVLCLSN
FT                   GTLLAQRVAGVQKSGSYNTSSSNSRIRVMSAYHCGASWAMAMGDDALESVDTDLTVYKN
FT                   LGFKVEVSGELEFCSHIFMSPDLAVPVNRAKMLYKLIHGYNPASGSLEVVSNYLNACFS
FT                   VLNELRSDPDFVSLLYTWLVSPVLPQKNV"
FT   CDS             786..1385
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:K9LHF5"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9LHF5"
FT                   /protein_id="AFJ19357.1"
FT                   /translation="MNTVGARNGRRRVRGRRTARVARRAPVVVVQTPRQPPRGRRRRRN
FT                   RRRAGGRSAVGGRGSSETFVFSKDSLTGSSTGSITFGPSLSECPAFSNGILKAYHEYKI
FT                   TMVKLEFISEASSTSSGSIAYELDPHCKLTSLASTINKFGITKNGSRTFTAKLLNGVEW
FT                   RASDEDQFRILFRGNGGSSIAGSFKFTIRVQTQNPK"
FT   CDS             808..1389
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:K9LH15"
FT                   /protein_id="AFJ19358.1"
FT                   /translation="MAGEGYEDEGLLGLRDAHQWLLSKPLGSHRADEDDEETVDALVEE
FT                   AQLEGEGRARHSSFRKTLSREVPQEVSRSGRLYQSARHSVMEFSRPTMSIKSRWLSWSS
FT                   SPRPLQPPRDRSLMSWIPTVSSRPLRPRLTNSESQRMDQGRLLPNSSMGLNGAHRMKTN
FT                   SESSFEETEVPLSLVHLSSPYASRPKTPNR"
FT   CDS             <1386..>1960
FT                   /codon_start=1
FT                   /product="aphid transmission protein"
FT                   /note="ORF5; putative read-through protein"
FT                   /db_xref="GOA:K9LHK2"
FT                   /db_xref="InterPro:IPR002929"
FT                   /db_xref="UniProtKB/TrEMBL:K9LHK2"
FT                   /protein_id="AFJ19359.1"
FT                   /translation="VDGSPPPGPQPPPPPPPQPQPCPKAARFWGYEGVPQSKILTAENN
FT                   RNIDYRPLNFITMWKWEDEKWDKINLQAGYSRNDSRCMEAYCVIPANKGKHNVYIEADG
FT                   EFVVKHIGGNLDGSWLGNIAYDVSQRGWTVANYKGCKIANLQVNTAFVPGHPDAEMNGK
FT                   SFDSARAIEVDWFASFELTCDDDEGGWML"
XX
SQ   Sequence 1960 BP; 539 A; 468 C; 499 G; 454 T; 0 other;
     agtgtcgcgg actggatgct tgctgatgag atggaagtcc gcaatcgtct gacggtgcac        60
     aacaacgcgc ttactcgacg ccttcgagcc tgttggctca agtgcatttc gaattctgtg       120
     ttgtgcctgt ccaacggaac actgcttgcc caaagagtgg cgggggtcca aaagagcggt       180
     agttacaata ccagctcctc caacagcagg atccgtgtga tgagcgccta ccactgtggc       240
     gcatcatggg cgatggccat gggcgatgac gcccttgagt cagtggacac cgacctaacg       300
     gtgtataaaa atttaggttt taaagtcgag gtttcaggag aactggaatt ctgctctcat       360
     atctttatga gccctgacct cgccgtgccg gtcaacagag ccaaaatgtt atacaagctc       420
     atacatggct ataacccggc atcaggaagt ctggaggtag tcagcaacta cctgaacgcg       480
     tgcttcagcg tactcaacga attgcgttca gatccagatt tcgtctctct tctctatacg       540
     tggctagttt ctccggtgct gccacaaaag aacgtatagg agaagataga gcataaggta       600
     gcctttggtt ttgttgcaac agaaggagcc ataagtcaaa actaggaaag aaagcacaca       660
     gtacaaaata gattacaaat ttctgtcagg attcacagca gggtttctga cagcaatacc       720
     cttagcaagc gtgtgcttat atatcattta cctcaaaatt tcagcccacg tacgagcaat       780
     agttaatgaa tacggtaggg gctagaaatg gcaggagaag ggtacgagga cgaaggactg       840
     ctcgggttgc gcgacgcgca ccagtggttg ttgtccaaac ccctaggcag ccaccgcgcg       900
     gacgaagacg acgaagaaac cgtagacgcg ctggtggaag aagcgcagtt ggagggagag       960
     ggtcgagcga gacattcgtc ttttcgaaag actctctcac gggaagttcc acaggaagta      1020
     tcacgttcgg gccgtctcta tcagagtgcc cggcattcag taatggaatt ctcaaggcct      1080
     accatgagta taaaatcacg atggttaagc tggagttcat ctccgaggcc tcttcaacct      1140
     cctcgggatc gatcgcttat gagctggatc cccactgtaa gctcacgtcc cttgcgtcca      1200
     cgattaacaa attcggaatc acaaagaatg gatcaaggac gtttactgcc aaactcctca      1260
     atggggttga atggcgcgca tcggatgaag accaattccg aatcctcttt cgaggaaacg      1320
     gaggttcctc tatcgctggt tcatttaagt tcaccatacg cgtccagacc caaaacccca      1380
     aataggtaga tggtagtccc cccccaggac ctcaacctcc acctcctccc cctcctcaac      1440
     ctcaaccctg ccctaaagca gcgcgctttt ggggttatga aggagtgcca caaagtaaaa      1500
     ttttgacggc ggaaaataac cgtaacattg attacaggcc cctcaatttt ataacaatgt      1560
     ggaagtggga agatgagaag tgggataaaa taaacctcca agctggttat tcacgaaatg      1620
     attcaagatg catggaggct tactgcgtaa tccccgccaa taagggcaaa cacaatgtat      1680
     atattgaagc tgatggcgag ttcgtcgtca agcatattgg cggaaactta gatggcagtt      1740
     ggttggggaa cattgcgtat gacgtctccc agagaggatg gactgtcgcg aattacaaag      1800
     gttgcaagat tgccaacttg caggttaaca cagcctttgt tcctgggcat cccgatgctg      1860
     aaatgaacgg aaaatcattt gactcagctc gggctataga agtcgattgg ttcgcatcct      1920
     ttgaactcac atgtgatgac gacgaaggag gatggatgct                            1960
//