ID JF803285; SV 1; linear; genomic RNA; STD; VRL; 2801 BP. XX AC JF803285; XX DT 28-SEP-2011 (Rel. 110, Created) DT 28-SEP-2011 (Rel. 110, Last updated, Version 1) XX DE Barley stripe mosaic virus strain Norwich segment gamma, complete sequence. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-2801 RA Lee M.Y., Jackson A.O.; RT ; RL Submitted (13-APR-2011) to the INSDC. RL Plant & Microbial Biology, University of California Berkeley, 111 Koshland RL Hall, Berekely, CA 94720-3102, USA XX DR MD5; 06aa840aae6815dc42bc08c6fdf26644. DR EuropePMC; PMC3915304; 24499968. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="Barley stripe mosaic virus" FT /segment="gamma" FT /host="Hordeum vulgare" FT /strain="Norwich" FT /mol_type="genomic RNA" FT /db_xref="taxon:12327" FT CDS 89..2038 FT /codon_start=1 FT /product="gamma-a protein" FT /db_xref="GOA:G4XG10" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:G4XG10" FT /protein_id="AEP04419.1" FT /translation="MDVVKKFAVMSVTVVAGPVLTLSSPVVVTFGTGLIAVSLVKRLLQ FT EQPRVIAYDHEHYPGGSESSSSSCATAPILRNLSRDQCDSENIGCSSSACSPSEIVKVT FT RQVVEVERGLYRDIFQDNEIPSVMEEKLQKLLYSEGEKIRRRCQFEASTMHSRKVKVPE FT VGTIPDIQTWFDATFPGNSVRFSDFDGYTVATEDINMDVQDCRLKFGKTFRPYELKESL FT KPVLRTAMPEKRQGSLIESVLAFRKRNLAAPRLQGALNEWHTIENVLKKALKVFFFEDL FT IDRTDHCTYESALRWWDKQSVTARAQLVADQRRLCDVDFTTYNFMIKNDVKPKLDLTPQ FT VEYAALQTVVYPDKIVNAFFGPIIKEINERIIRALRPHVVFNSRMTADELNETVAFLTP FT HKYRALEIDFSKFDKSKTGLHIKAVIGLYKLFGLDGLLKVLWEKSQYQTYVKDRNFGLE FT AYLLYQQKSGNCDTYGSNTWSAALALLDCLPLEDAHFCVFGGDDSLILFDQGYIISDPC FT RQLAGTWNLECKVFDFKYPAFCGKFLLCIDGKYQFVPDAAKFITKLGRTDVRDVEVLSE FT IYISINDNYKSYKDFKVLDALDKALVDRYRSPYSAISALVSLCYHIFDFNKFKLLFNCE FT GKFVDKKLRKDFEW" FT CDS 2081..2542 FT /codon_start=1 FT /product="gamma-b protein" FT /db_xref="InterPro:IPR007609" FT /db_xref="UniProtKB/TrEMBL:G4XG11" FT /protein_id="AEP04420.1" FT /translation="MMATFSCVCCGTSTTSTYCGKRCERKHVYSETRNKRLELYKKYLL FT EPQKCALNEIVGHSCGMLCSIAEEACDQLPIVSRFCGQKHADLYDSLLKRSEQELLLEF FT LQKKMQELKLSHIVKMAKLESEVNAIRKSVASSFEDSVGCDDSSSISKL" XX SQ Sequence 2801 BP; 811 A; 507 C; 647 G; 836 T; 0 other; gtatagcttg agcattaccg tcgtgtaatt gcaacacttg gcttgccaaa taacgctaaa 60 gcgttcacaa aacaaacaac aattcggcat ggatgttgtg aagaaattcg ccgtcatgtc 120 agtgactgta gtagcaggtc ccgtccttac gctttcatca cctgtggtgg tgacgtttgg 180 aacaggctta attgccgtat ctttggtgaa acggttgcta caggaacaac cccgtgtaat 240 tgcttacgat cacgaacatt acccaggtgg ttctgagagc agttctagct cttgtgctac 300 cgcgcctatt ttacgtaatc tttcgcgaga tcagtgcgat tcagagaata ttggatgcag 360 ttctagcgcc tgttctccgt ctgaaattgt gaaagttaca aggcaggtag tggaagttga 420 acgtggtctt taccgggaca tttttcagga caacgaaatc ccatcagtca tggaagagaa 480 actgcagaaa ctcctttact ctgagggtga gaagattcga agacgttgcc aatttgaagc 540 atcaacgatg cactcacgca aagtaaaggt tccggaggta ggtactatcc cagatatcca 600 aacttggttc gatgctacgt ttcctggtaa ctccgttagg ttttctgatt tcgacggtta 660 tactgtcgct acggaggaca ttaacatgga tgttcaggat tgtagactta agttcgggaa 720 gacttttcga ccttatgaac ttaaggaatc actgaaacca gtactgagga cagcaatgcc 780 agagaagcga cagggtagtt tgattgaaag tgtgctggcc tttcgtaaaa gaaatttggc 840 tgcgcccaga ttgcaaggag ctttgaatga atggcacaca attgagaatg tgctaaagaa 900 ggcgttaaag gtattcttct ttgaagattt aattgatcga acggatcatt gcacttacga 960 gtcagcgctc agatggtggg ataaacaatc agtgacggcc cgagcgcagc ttgtggcgga 1020 ccaacggagg ttatgtgatg ttgacttcac gacttataac ttcatgataa aaaatgatgt 1080 aaagccgaag ttagatctaa cacctcaagt tgaatatgca gctttgcaga ctgttgtgta 1140 tcctgataag atagtcaatg ctttctttgg tccgatcata aaggagatta atgaacggat 1200 catcagagcg cttagacctc atgtggtctt taattctcgt atgactgctg atgaactgaa 1260 tgaaacagtt gcctttttga cacctcacaa gtacagagcc ttagagattg acttttcaaa 1320 atttgataaa tcaaagactg ggcttcatat caaagctgtc attggactct ataagctctt 1380 tggcctggat ggcctgttaa aagtactctg ggaaaaatcg caatatcaga cttacgtgaa 1440 agatagaaac ttcggtctcg aagcatatct attatatcag caaaagtcag gaaattgtga 1500 cacttacggt tcgaacacct ggtctgccgc cttggcgttg ttagattgtc ttcctttgga 1560 agatgcacat ttctgtgtat ttggtggtga tgattcattg atattgtttg atcagggata 1620 tataatttcc gacccatgcc ggcaacttgc cggtacttgg aatcttgaat gtaaagtgtt 1680 cgactttaag taccccgcgt tttgtggtaa atttctgctg tgcatagatg gaaaatatca 1740 gtttgttcca gatgcggcaa aatttatcac aaaattaggt agaactgatg tgagagatgt 1800 agaagttttg agtgagattt atatctctat caatgacaat tacaaatctt acaaagactt 1860 taaggtactt gatgctttgg ataaggcttt agtggataga tatcgatccc cttatagtgc 1920 tatttctgct ttggtttctt tatgttatca tatctttgac tttaataagt ttaagttgct 1980 gtttaattgt gaagggaaat ttgtggataa gaagctgaga aaggatttcg agtggtgaac 2040 tctaggtcct gatgtttaaa tctactgtat ttaccttcgc atgatggcta ctttctcttg 2100 tgtgtgttgt ggtacctcaa ctacaagtac ttactgtggt aagagatgtg agcgaaagca 2160 tgtatattct gaaacaagaa ataagagatt ggaactttac aagaagtatc tattggaacc 2220 gcaaaaatgc gccctgaatg aaatcgttgg gcacagttgt ggaatgctat gctccattgc 2280 ggaagaggct tgtgatcaac tgccaatcgt gagtaggttc tgtggccaaa agcatgcgga 2340 tctgtatgat tcacttctaa aacgttctga acaggagtta cttcttgaat ttctccagaa 2400 gaagatgcag gagctgaaac tttctcatat cgtaaaaatg gctaagcttg aaagtgaggt 2460 taacgcgata cgtaagtccg tagcttcttc ttttgaagat tctgttggat gtgatgattc 2520 ttcttccatt tctaagttgt aaaaaaaaaa aaaaaaaaaa aatgtttgat cagatcattc 2580 aaatctgatg gtgcccatca accatatgat gggagtgttt acaagtccac tataatcgaa 2640 cttgaaaaac cttgcctgaa ttggaaacca tgaatcttaa cggattctgg agagaaaatt 2700 taggaattgg tatgtaagct acaacttccg gtagctgcgt cacactttaa gagtgtgcat 2760 actgagccga agctcagctt cggtccccca agggaagacc a 2801 //