ID JF803284; SV 1; linear; genomic RNA; STD; VRL; 3239 BP. XX AC JF803284; XX DT 28-SEP-2011 (Rel. 110, Created) DT 28-SEP-2011 (Rel. 110, Last updated, Version 1) XX DE Barley stripe mosaic virus strain Norwich segment beta, complete sequence. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-3239 RA Lee M.Y., Jackson A.O.; RT ; RL Submitted (13-APR-2011) to the INSDC. RL Plant & Microbial Biology, University of California Berkeley, 111 Koshland RL Hall, Berekely, CA 94720-3102, USA XX DR MD5; c57535ec1e0f8758561dbd2974564ef6. DR EuropePMC; PMC3915304; 24499968. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3239 FT /organism="Barley stripe mosaic virus" FT /segment="beta" FT /host="Hordeum vulgare" FT /strain="Norwich" FT /mol_type="genomic RNA" FT /db_xref="taxon:12327" FT CDS 90..686 FT /codon_start=1 FT /product="coat protein" FT /note="beta-a protein" FT /db_xref="GOA:Q89433" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q89433" FT /protein_id="AEP04417.1" FT /translation="MPNVSLTAKGGGHYNEDQWDTQVVEAGVFDDWWVHVEAWNKFLDN FT LRGINFSVASSRSQVAEYLAALDRDLPADVDRRFAGARGQIGLPNYLPAPKFFRLDKRT FT IAELTRLSRLTDQPHNNRDIELNRAKRATTNPSPPAQAPSENLTLRDVQPLKDSALHYQ FT YVLIDLQSARLPVYTRKTFERELALEWIIPDAEEA" FT CDS 804..2342 FT /codon_start=1 FT /product="beta-b protein" FT /note="TGB1" FT /db_xref="GOA:G4XG07" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G4XG07" FT /protein_id="AEP04415.1" FT /translation="MDMTKTVEEKKTNGTDSVKNVSEDSTIPKVPTGKEMGAHGNDSST FT SELKETLKVADQTPMSVDNGAKSKLDSSDRQVPSPKLATTVGKKPENPKIKKPKKKRNQ FT KPAQPSRPNDLKDETRESPQVGENVSENYTGVSKEAARQRKTPKSVKMQSNLADKFKAN FT DTRRSELINKFQQFVHETCLKSDFEYTGRQYFRARSNFFEMIRLTSLYDKHLKECMARA FT CTLERERLKRKLLLVRALKPAVDFLTGIISGVPGSGKSTIVRTLLKGEFPAVCALANPA FT LMNDYSGIEGVYGLDDLLLSAVPITSDLLIIDEYTLAESAEILLLQRRLRASMVLLVGD FT VAQGKATTASSIEYLTLPVIYRSETTYRLGQETASLCSKQGNRMVSKGGKDKVIITDYD FT GETDETEKNIAFTVDTVRDVKDCGYDCALAIDVQGKEFDSVTLFLRNEDRKALADRHLR FT LVALSRHKSKLIIRADAEIRQAFLTGDIDLSSKASNSHCYSAKPDEDHSWFKAK" FT CDS 2311..2706 FT /codon_start=1 FT /product="beta-d protein" FT /note="TGB2" FT /db_xref="GOA:Q5Q1D7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q5Q1D7" FT /protein_id="AEP04416.1" FT /translation="MKTTVGSRPNKYWPIVAGIGVVGLFAYLIFSNQKHSTESGDNIHK FT FANGGSYRDGSKSISYNRNHPFAYGNASSPGMLLPAMLTIIGIISYLWRTRDSVLGNSG FT GNNSCGEDCQGECLNGHSRRSLLCDIG" FT CDS 2516..2983 FT /codon_start=1 FT /product="beta-c protein" FT /note="TGB3" FT /db_xref="GOA:Q65720" FT /db_xref="InterPro:IPR007617" FT /db_xref="UniProtKB/TrEMBL:Q65720" FT /protein_id="AEP04418.1" FT /translation="MAMPHPLECCCPQCLPSSESFPIYGEQEIPCSETQAETTPAERIV FT KANVLTDILDDHYYAILASLFIIALWLLYIYLSSVPMETGPYFYQDLNSVKIYGVGATN FT PEVIAAIHHWQKYPFGESPMWGGLVSVLSILLKPLTLVLALSFFLLLSSKK" XX SQ Sequence 3239 BP; 954 A; 636 C; 739 G; 910 T; 0 other; gtaaaagaaa aggaacaacc ctgttgttgt tcgacactat actaaatata tattatctta 60 ctagtgcatt tcttttaccg cttcacagta tgccgaacgt ttctttgact gctaagggtg 120 gaggacacta caacgaggat caatgggaca cacaagttgt ggaagccgga gtatttgacg 180 attggtgggt ccacgtagaa gcctggaata aatttctaga caatttacgt ggtatcaact 240 ttagcgttgc ttcctctcgg tcgcaagttg ctgaatactt agctgcgtta gatcgtgatc 300 tacctgctga tgtagacaga cggtttgcag gtgctagagg acaaattggt ttacccaatt 360 atcttcctgc accaaaattc tttcgtctcg ataagcgaac tattgctgaa ctgactagac 420 tctctcgtct tacggatcag ccgcacaaca atcgtgatat agagcttaac cgagcgaaaa 480 gagccacaac taacccatct cccccggcgc aggcaccgtc ggagaatctt actcttcgtg 540 atgttcaacc gttaaaggat agtgcgttgc attatcaata cgtgttgatt gacctacaga 600 gtgcgagact cccggtgtat accaggaaga ctttcgaacg tgaactcgct ttggaatgga 660 tcattccaga tgccgaggaa gcgtgacctg ctgtcgaagc ggtaaaagga tgtacatatg 720 tatcttattt attttgttta tttattttct tttactttta gtttttgctt tttacgcttt 780 aactagatgt attgacttta gccatggaca tgacgaaaac tgtcgaggaa aagaaaacaa 840 atggaactga ttcagtgaaa aatgtttctg aagattcgac gattcctaaa gttccaactg 900 gaaaggaaat gggtgcacat ggtaacgatt cctctacttc tgaattaaag gaaactctga 960 aagttgccga tcagactcca atgtccgttg acaatggtgc caaatccaaa ttggattctt 1020 ctgatagaca agttcctagc cctaagttgg caacaactgt gggaaagaaa cctgagaatc 1080 ctaaaattaa gaagcccaag aagaaacgaa accaaaaacc tgctcaaccg agcaggccca 1140 atgaccttaa agatgagact agggaatcac ctcaagtggg tgagaatgtg agtgagaact 1200 atactggggt ttctaaggaa gcagctaggc aaaggaagac gcccaagtct gtgaaaatgc 1260 aaagcaatct ggccgataag ttcaaagcga atgatactcg tagatcggaa ttaattaaca 1320 agtttcagca atttgtgcat gagacctgtc ttaaatctga ttttgagtac actggtcgac 1380 agtatttcag agctagatca aatttctttg aaatgattag gctcacatcc ttgtatgaca 1440 aacatctaaa ggaatgtatg gcgcgagcct gcaccctaga acgagaacga ttgaagcgta 1500 agttactcct agtacgagct ttgaaaccag cagtagactt ccttacggga atcatctctg 1560 gagttcctgg ctcaggaaaa tcaaccattg tgcgtacttt gctcaaaggt gaatttccgg 1620 ctgtttgtgc tttggccaat cctgccttaa tgaacgatta ttctggtatt gaaggcgttt 1680 acgggttaga tgacctgttg ctttctgcag ttccgataac gtctgattta ttgatcatag 1740 atgaatatac acttgctgag agcgcggaaa tcctgttgct acaacgaaga ctcagagcct 1800 ctatggtgtt gttagtcggg gatgtagctc aaggaaaagc caccactgct tccagtattg 1860 agtatttaac tctgccggtg atctacagat cagagacgac ttatcgtttg ggacaagaga 1920 ctgcttcgct ttgcagcaag cagggtaaca gaatggtttc aaagggagga aaggataaag 1980 tgatcattac tgattacgat ggcgaaacag atgaaacgga gaaaaatatc gcttttactg 2040 tcgatacagt tcgagatgtg aaagattgcg ggtacgattg tgccctggca attgatgtgc 2100 aagggaaaga attcgattca gtgactttat tcctaaggaa cgaagaccgg aaagctttag 2160 cagataggca tttgcgttta gttgctttga gcagacataa gtcgaagtta atcatcaggg 2220 ccgacgcgga aattcgtcaa gcgttcctga caggtgatat tgacttgagc tctaaggcga 2280 gtaactctca ttgttattct gcaaaaccgg atgaagacca cagttggttc aaggccaaat 2340 aagtattggc caattgtcgc cggaatcggt gtcgttggat tgtttgcgta tttgattttt 2400 tcaaatcaaa aacattctac ggaatccggt gataatattc acaaattcgc aaacggaggt 2460 agttacagag acgggtcaaa aagtataagt tataatcgta atcatccttt tgcctatggc 2520 aatgcctcat cccctggaat gttgctgccc gcaatgctta ccatcatcgg aatcatttcc 2580 tatttatggc gaacaagaga ttccgtgctc ggaaactcag gcggaaacaa ctcctgcgga 2640 gaggattgtc aaggcgaatg tcttaacgga cattctcgac gatcattact atgcgatatt 2700 ggctagtctt tttatcattg ctttatggct attgtatata tatctaagca gtgtacctat 2760 ggagactggt ccctacttct atcaggatct aaactctgtg aagatctatg gagtaggggc 2820 tacgaatcca gaagttattg cggccatcca tcattggcag aagtaccctt ttggggagtc 2880 tccgatgtgg ggaggtttag tcagcgtttt gagtattctt cttaaaccac tgacattagt 2940 tttagcgtta agcttttttc ttttactttc ttcaaaaaag tgaaaaaaaa aaaaaaaaaa 3000 tgtttgatca gatcattcaa atctgatggt gcccatcaac catatgatgt gagtgtttac 3060 aagtccacta taatcgaact tgaaaaactt tgcctgaatt ggaaaccatg aatcttaacg 3120 gattctggag agaaaattta ggaattggta tgtaagctac aacttccggt agctgcgtca 3180 cactttaaga gtgtgcatac tgagccgaag ctcagcttcg gtcccccaag ggaagacca 3239 //