ID JF803263; SV 1; circular; genomic DNA; STD; VRL; 2591 BP. XX AC JF803263; XX DT 10-OCT-2011 (Rel. 110, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Tomato severe rugose virus isolate DF[BR:PADFM:04] segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2591 RX DOI; 10.1007/s00705-011-1213-7. RX PUBMED; 22218964. RA Albuquerque L.C., Varsani A., Fernandes F.R., Pinheiro B., Martin D.P., RA de Tarso Oliveira Ferreira P., Lemos T.O., Inoue-Nagata A.K.; RT "Further characterization of tomato-infecting begomoviruses in Brazil"; RL Arch. Virol. 157(4):747-752(2012). XX RN [2] RP 1-2591 RA Albuquerque L.C., Varsani A., Pinheiro B., Fernandes F.R., Martins D.P., RA Ferreira P.T.O., Lemos T.O., Inoue-Nagata A.K.; RT ; RL Submitted (13-APR-2011) to the INSDC. RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil XX DR MD5; 181b76696ce46baf1c5d0ebbfbc02d4c. XX FH Key Location/Qualifiers FH FT source 1..2591 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="DF[BR:PADFM:04]" FT /mol_type="genomic DNA" FT /country="Brazil:Distrito Federal" FT /collection_date="2004" FT /clone="DFM" FT /note="acronym: TMoLCV" FT /db_xref="taxon:158463" FT CDS 171..926 FT /codon_start=1 FT /product="V1" FT /note="CP" FT /db_xref="GOA:Q3HM70" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q3HM70" FT /protein_id="AEP83026.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNYSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(923..1321) FT /codon_start=1 FT /product="C3" FT /note="REn" FT /db_xref="GOA:C4MDQ1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C4MDQ1" FT /protein_id="AEP83027.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLSRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT CDS complement(1068..1457) FT /codon_start=1 FT /product="C2" FT /note="Trap" FT /db_xref="GOA:G4XFY1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G4XFY1" FT /protein_id="AEP83028.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFSDSFWDDIFK" FT CDS complement(1399..2457) FT /codon_start=1 FT /product="C1" FT /note="Rep" FT /db_xref="GOA:G4XFY2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G4XFY2" FT /protein_id="AEP83029.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQVDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2040..2303) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G4XFY3" FT /protein_id="AEP83030.1" FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSNHMSTRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP" XX SQ Sequence 2591 BP; 662 A; 530 C; 602 G; 797 T; 0 other; accggatggc cgcgcgattt ttcacccctt tagtttcaat taaagtaaag tgattgtctg 60 tggcccaatc atattgggcc tgtcgagctt agatatttgt aacaacttaa ggcccaagtt 120 gttaaacggc tataaattga acgttaactt tacttttgct ttaattcaaa atgcctaagc 180 gtgatgcccc atggcgttta acggcgggaa cttcaaaggt ttcccgctct gtcaattatt 240 ctccccgtgc aggatatgga cccaaatata acaaggccgc tgagtgggtg aacaggccca 300 tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct agaggctgtg 360 aagggccttg taaggttcag tcttacgagt ctcgtcatga tgtttcccat gtcgggaagg 420 tgatttgtgt gtctgacgtt acacgtggta acggtattac tcaccgtgtt ggtaagcgtt 480 tctgcgtgaa gtctgtatat attttaggga aggtatggat ggacgagagc atcaagttga 540 agaatcacac aaatagtgtg atgttctggt tggttagaga tcggagacct tattcgacac 600 ctatggattt tggccaggtg ttcaacatgt ttgacaacga gcctagcact gcaactgtta 660 agaacgatct acgggatcgt tttcaggtca tgcacaagtt ttatgccaag gttactggtg 720 gacagtatgc cagtaatgag caggcattag tgaagcgctt ttggaaggtc aacaacaacg 780 tagtctacaa ccatcaggag gcagggaaat acgagaatca tactgagaac gccttgctat 840 tgtatatggc atgtactcat gcctctaacc ccgtgtatgc tacattgaaa attcggatct 900 atttttatga ttcgattact aattaataaa atttaaattt tattgaatga ttttcgagta 960 cagcatttac atatgatttg tctgttgcga aacgaacagc tctgattaca ttattaatgg 1020 aaataacgcc taatcgatct agatacaata agactaaata tttaaatcta cttaaatatg 1080 tcgtcccaga agctgtcaga gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga 1140 gatgcaatgc tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctcg 1200 cggtgtacat tggatcctcc actctgttta tcttgaaata gaggggattt gatatctccc 1260 aaatatagac gccattctct gcctgacgtg cagtgatgag ttcccctgtg cgtgaatcca 1320 tgtcctctgc agtcgatgtg tacgtaaata gagcacccgc actctatatc aattcgtcgt 1380 ctcctgattc ctcgtttttt agcagctctg tgttgtacct tgatagaggg gggtgttaag 1440 gaagacgaat ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc 1500 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc atgggatacc 1560 acctttaatt tgaactggct ttccgtattt gcagtttgat tgccaatcct tttgggcccc 1620 aagtaattct ttccagtgct ttaactttag atagtgcggt gcgatgtcat caatgacgtt 1680 atattcaaca tgatttgaat aaaccctagg attgaaatct aggtgtccac tcaaataatt 1740 atgggcccct aatgcacgtg cccacatcgt ctttcccgtt cgagaatcac cttcaatgat 1800 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt catctgccca 1860 agcttgcatc tctctcggta cgctagtgaa agaggagagg ggaaacgtag gggcccatgg 1920 ctccggagcc cttgtaaata tcctatctaa attactattt agattgtgaa actgaaataa 1980 gaacttttca ggcagcttct cacggattat ctgcaaggcg acgtctttgg aaggtgcgtt 2040 caaggcttct gcggcagcgt cgttagctgt ctggcaaccg cctctagcac ttcttccgtc 2100 gacttggaat tccccccact cgatagtatc tccgtccttg tcgacatatg atttgacgtc 2160 ggacgatgac ttagctctct gaatgttcgg atggaaatgt gttgaccttg ttggggagac 2220 caggtcgaag aatcgttgat tttggcagca gtagttgccc tcaaattgaa gaagcacgtg 2280 gagatgaggc tccccatttt catggagctc tctgcaaacc ttgatgaact tcttatttgt 2340 aggagtgttt agggttttta attgggaaag tgcttcttct ttcgataatg agcatttggg 2400 atatgtgagg aaataattct tcgcttttat ttgaaagcgc tttggagctg atggcatatt 2460 tgtaaatatg actcttgcta ccaattggta gcagctctaa aactcgtatg aattggtagt 2520 tatggtagct cttatatagt agaagttctt taaggagatt gctacacgtg gcggccatcc 2580 attataatat t 2591 //