ID JF803253; SV 1; circular; genomic DNA; STD; VRL; 2617 BP. XX AC JF803253; XX DT 10-OCT-2011 (Rel. 110, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Tomato interveinal chlorosis virus isolate PE[BR:BSF2729:04] segment DNA-A, DE complete sequence. XX KW . XX OS Tomato interveinal chlorosis virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2617 RX DOI; 10.1007/s00705-011-1213-7. RX PUBMED; 22218964. RA Albuquerque L.C., Varsani A., Fernandes F.R., Pinheiro B., Martin D.P., RA de Tarso Oliveira Ferreira P., Lemos T.O., Inoue-Nagata A.K.; RT "Further characterization of tomato-infecting begomoviruses in Brazil"; RL Arch. Virol. 157(4):747-752(2012). XX RN [2] RP 1-2617 RA Albuquerque L.C., Varsani A., Pinheiro B., Fernandes F.R., Martins D.P., RA Ferreira P.T.O., Lemos T.O., Inoue-Nagata A.K.; RT ; RL Submitted (13-APR-2011) to the INSDC. RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil XX DR MD5; 698851d83e65aed187f4345f44732dce. XX FH Key Location/Qualifiers FH FT source 1..2617 FT /organism="Tomato interveinal chlorosis virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="PE[BR:BSF2729:04]" FT /mol_type="genomic DNA" FT /country="Brazil:Pernambuco" FT /collection_date="2004" FT /clone="2729" FT /note="acronym: ToICV" FT /db_xref="taxon:1089387" FT CDS 188..943 FT /codon_start=1 FT /product="V1" FT /note="CP" FT /db_xref="GOA:G4XFS9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G4XFS9" FT /protein_id="AEP82976.1" FT /translation="MPKRDAPWRHMAGTSKISRSANYSPRAGVGPRPSKASEWVNRPMY FT RKPRIYRMYRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWRVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(940..1338) FT /codon_start=1 FT /product="C3" FT /note="REn" FT /db_xref="GOA:G4XFT0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G4XFT0" FT /protein_id="AEP82977.1" FT /translation="MDSRTGERITAHQAENGVYTWEISNPLYFKMYNVEDLLYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQVWTTSLRASGMTYLSRFKFLVQLYLDQLGVISVNN FT VIRAVRFATDKSYVHDVLENHSIKFKIY" FT CDS complement(1085..1477) FT /codon_start=1 FT /product="C2" FT /note="Trap" FT /db_xref="GOA:G4XFT1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G4XFT1" FT /protein_id="AEP82978.1" FT /translation="MRNSSFSTPPSIKVQHRAAKKKRATRRRRIDLQCGCSIYVHIHCA FT GHGFTHRGTHHCTSGREWRVYLGDIKSPLFQDVQCGGPTLHEDESLPRPDTVQPQPAES FT VGSPQGLSELPSLDDIPESFWDDIFK" FT CDS complement(1419..2474) FT /codon_start=1 FT /product="C1" FT /note="Rep" FT /db_xref="GOA:G4XFT2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G4XFT2" FT /protein_id="AEP82979.1" FT /translation="MPLPKRFRLNAKNYFLTYPKCSLSKEEALSQLLALTIPVNKLFIR FT VARELHEDGQPHLHVLIQFEGKYQCTNERLFDLVSPTRSAHFHPNIQAAKSSSDVKAYV FT EKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILKEEQPKDYVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQSWADDYFGRDPAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ FT RDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKYFLDKEENSALNNWTKHNAQFVFLN FT SPLYQSSTSGS" FT CDS complement(2024..2317) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G4XFT3" FT /protein_id="AEP82980.1" FT /translation="MGNLICTSSYSSKENTSARTNDCSTLYPQQGQHISIRTFRQLRAR FT QMSRHTWRKTETSLIMEFSRSMEDQLEEVSNLPTTRMPRSLTQDQSWRPSIY" XX SQ Sequence 2617 BP; 693 A; 554 C; 610 G; 760 T; 0 other; accggatggc cgcgaaaaaa tttggacctg ggccgctttt attgggcccg ctctctttat 60 tgattgaaag taatgtgtgg cccaaccatg ttaagtctga cgagcttaga tatttgaaac 120 tacttagcgc ccaagttgta taacggctat aaattgcaca tgattatgac gataacttta 180 attcaaaatg cctaagcgcg atgccccatg gcgccacatg gcagggacgt ctaagattag 240 ccgttccgct aattattctc ctcgtgcagg agttgggcca cgacccagca aggcctccga 300 atgggttaac aggcctatgt acaggaagcc caggatatat cggatgtata ggacccccga 360 tgttccaaga ggttgtgaag gcccatgtaa agtccagtct tacgagcagc gtcacgatat 420 atcccatgtt ggtaaggtga tgtgtgtgtc ggacgtgaca agaggtaatg gtattaccca 480 ccgtgtagga aagcgttttt gtgttaagtc tgtttatatt ttaggtaaga tatggatgga 540 cgagaatatc aagttgaaga accacaccaa cagtgttatg ttttggctgg tcagagaccg 600 tagaccctat ggtactccta tggactttgg ccaagttttt aacatgtttg acaatgagcc 660 cagtactgcc acggtcaaga acgatcttcg tgatcgttac caagttatgc ataaattcta 720 tgctaaggtg acaggtggac aatacgcaag caatgaacaa gcgctggtga agcgtttttg 780 gagggtcaac aatcacgtgg tgtacaatca tcaagaagct gggaaatacg agaatcatac 840 ggagaacgca ttattattgt atatggcatg tactcatgcc tcgaaccctg tgtatgcgac 900 attaaaaatt cggatctatt tttatgattc gataacaaat taataaattt tgaattttat 960 tgaatgattc tcaagtacat catggacgta tgatttgtct gttgcgaaac gaacagctct 1020 aattacatta ttaactgaaa taacgcctaa ttgatctaga tacaactgaa caagaaattt 1080 aaatctactt aaatatgtca tcccagaagc tctcagggat gtcgtccaaa cttggaagtt 1140 cagataagcc ttgtggagac ccaacactct ccgcaggttg tggttgaacc gtatctggac 1200 gtggtagact ctcgtcctcg tgtagagtag gtcctccaca ttgtacatct tgaaataaag 1260 gggatttgat atctcccagg tatacacgcc attctctgcc tgatgtgcag tgatgcgttc 1320 ccctgtgcgt gaatccatgc cctgcgcagt ggatgtggac gtatatggag cacccgcact 1380 gtagatcaat tcgtcttcgt cgtgttgccc tcttcttttt agctgcccga tgttgaactt 1440 tgatagaggg gggagttgag aaagacgaat tgcgcattgt gctttgtcca attatttaat 1500 gctgagtttt cctctttgtc gaggaaatat ttataactgg ccccctcgcc aggattgcaa 1560 agcacgatgc atgggatacc gcctttaatt tgaactggct tgccgtactt gcagtttgat 1620 tgccagtccc tttgggcccc gataagttct ttccagtgct ttaactttag atagtgcggt 1680 gcgacatcat caatgacgtt atactgcaca tcgtttgaat acacctttga attaaaatcg 1740 aggtgaccgc tcaagtaatt gtgggaccct aatgcacgtg cccacatggt cttccctgtc 1800 cttgaatcac cctcgattat tatactgata ggcctctccg gccgcgcagc gggatccctt 1860 ccgaaatagt catctgccca agattgcatc tcgacaggca cgttagtgaa cgacgagagg 1920 ggaaacggag gaacccacgg ttctggagcc tttgcaaata tacgctctaa atttgaacga 1980 atattatgat gctgaagaac gtaatctttt ggttgttcct cctttaatat attgagggcc 2040 tccatgactg atcctgcgtt aaggaccttg gcatacgtgt cgttggcaga ttgctgacct 2100 cctctagctg atcttccatc gatctggaaa actccatgat caacgaagtc tccgtctttc 2160 tccacgtatg ccttgacatc tgacgagctc ttagctgcct gaatgttcgg atggaaatgt 2220 gctgaccttg ttggggatac aaggtcgaac aatcgttcgt tcgtgcactg gtattttcct 2280 tcgaactgta tgaggacgtg cagatgaggt tgcccatctt cgtgtaattc tctggctaca 2340 cgaatgaata gtttattgac tggtattgtt aaggctaaca gttgggaaag tgcttcttct 2400 ttcgaaagag aacatttagg ataagtgaga aaatagtttt tggcatttaa acgaaatcgt 2460 ttcgggagtg gcatatttgt aaataagagc ttgtacaccg attgggagct ctcacaaagt 2520 ccgaatgaat cggtgtattg gtgtacaata tatactagaa ccctcaatag aactttcaat 2580 ctcgaccgaa cacgtggcgg ccatccgtta taatatt 2617 //