ID JF803252; SV 1; circular; genomic DNA; STD; VRL; 2617 BP. XX AC JF803252; XX DT 10-OCT-2011 (Rel. 110, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Tomato interveinal chlorosis virus isolate PE[BR:Mdc2681:04] segment DNA-A, DE complete sequence. XX KW . XX OS Tomato interveinal chlorosis virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2617 RX DOI; 10.1007/s00705-011-1213-7. RX PUBMED; 22218964. RA Albuquerque L.C., Varsani A., Fernandes F.R., Pinheiro B., Martin D.P., RA de Tarso Oliveira Ferreira P., Lemos T.O., Inoue-Nagata A.K.; RT "Further characterization of tomato-infecting begomoviruses in Brazil"; RL Arch. Virol. 157(4):747-752(2012). XX RN [2] RP 1-2617 RA Albuquerque L.C., Varsani A., Pinheiro B., Fernandes F.R., Martins D.P., RA Ferreira P.T.O., Lemos T.O., Inoue-Nagata A.K.; RT ; RL Submitted (13-APR-2011) to the INSDC. RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil XX DR MD5; 038d5fa2f85642bb730fcd868bc6941d. XX FH Key Location/Qualifiers FH FT source 1..2617 FT /organism="Tomato interveinal chlorosis virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="PE[BR:Mdc2681:04]" FT /mol_type="genomic DNA" FT /country="Brazil:Pernambuco" FT /collection_date="2004" FT /clone="2681" FT /note="acronym: ToICV" FT /db_xref="taxon:1089387" FT CDS 188..943 FT /codon_start=1 FT /product="V1" FT /note="CP" FT /db_xref="GOA:G4XFS4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G4XFS4" FT /protein_id="AEP82971.1" FT /translation="MPKRDAPWRHMAGTSKISRVANYSPRAGVGPRSNKASEWVNRPMY FT RKPRIYRMYRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWRVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIIN" FT CDS complement(940..1338) FT /codon_start=1 FT /product="C3" FT /note="REn" FT /db_xref="GOA:G4XFS5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G4XFS5" FT /protein_id="AEP82972.1" FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDLLYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQVWTTSLRASGMRYLSRFKFLVQLYLDQLGVISVNN FT VIRAVRFATDKSYVHDVLENHSIKFNIY" FT CDS complement(1085..1477) FT /codon_start=1 FT /product="C2" FT /note="Trap" FT /db_xref="GOA:G4XFS6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G4XFS6" FT /protein_id="AEP82973.1" FT /translation="MRNSSFSTPPSIKVQHRAAKRKRATRRRRIDLQCGCSIYVHIHCA FT GHGFTHRGTHHCTSGREWRVYLGDIKSPIFQDVQCGGPTLHEDESLPRPDTVQPQPAES FT VGSPQGLSQLPSLDDIPESFWDEIFK" FT CDS complement(1419..2474) FT /codon_start=1 FT /product="C1" FT /note="Rep" FT /db_xref="GOA:G4XFS7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G4XFS7" FT /protein_id="AEP82974.1" FT /translation="MPLPKRFRLNAKNYFLTYPKCSLSKEEALSQLLALTIPVNKLFVR FT VARELHEDGQPHLHVLIQFEGKYQCTNERLFDLVSPTRSAHFHPNIQAAKSSSDVKAYV FT EKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILKEEQPKDYVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQSWAHDYFGRDAAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ FT RDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENSALNNWTKHNAQFVFLN FT SPLYQSSTSGS" FT CDS complement(2024..2317) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G4XFS8" FT /protein_id="AEP82975.1" FT /translation="MGNLICTSSYSSKENTSARTNDCSTLYPQQGQHISIRTFRQLRAR FT QMSRHTWRKTETSLIMEFSRSMEDQLEEVSNLPTTRMPRFLTQDQSWRPSIY" XX SQ Sequence 2617 BP; 692 A; 563 C; 610 G; 752 T; 0 other; accggatggc cgcgaaaaat tttggacttg ggccgcttta gttgggcccg ctctctttat 60 tgaatgaaag taatgtgtgg cccaaccata ttacgtctga cgagttaaga tatttgtaac 120 gacttagcgc ccaagtttag caacggctat atattgaacg tgcaattgtc agtaacttta 180 attcaaaatg cctaagcgcg atgccccatg gcgccacatg gcaggtacgt ctaagattag 240 ccgggtcgct aattattctc ctcgtgcagg agttgggcca cgatccaaca aggcctctga 300 atgggttaac aggcctatgt acaggaagcc caggatatat cggatgtaca ggacccccga 360 tgttccaaga ggctgtgaag gcccatgtaa agtccagtcg tatgagcagc gtcacgatat 420 atcccatgtt ggtaaggtga tgtgcgtctc cgacgtgaca agaggtaatg gtattaccca 480 ccgtgtaggg aagcgttttt gtgttaagtc cgtttatatt ttaggtaagg tatggatgga 540 cgagaatatc aagttgaaga accacaccaa cagtgttatg ttctggctgg tcagagaccg 600 tagaccctat gggactccta tggacttcgg ccaagttttt aacatgtttg acaatgagcc 660 cagtactgcc acggtcaaga acgatcttcg tgatcgttac caagttatgc ataaattcta 720 tgctaaggtg acaggtggac aatacgcaag caatgaacaa gcgctggtca agcgtttctg 780 gagggtcaac aatcacgtgg tgtacaatca tcaagaagcc gggaaatacg agaatcatac 840 ggagaacgca ctattattgt atatggcatg tactcatgcc tcgaaccctg tgtatgcgac 900 tttaaaaatt cggatctatt tctatgattc gataataaat taataaatgt tgaattttat 960 tgaatgattc tctagtacat catgaacata tgatttgtct gttgcgaaac gaacagctct 1020 aattacatta ttaactgaaa taacgcctaa ttgatctaga tacaactgaa caagaaattt 1080 aaatctactt aaatatctca tcccagaagc tctcagggat gtcgtccaaa cttggaagtt 1140 gagataagcc ttgtggagac ccaacactct ccgcaggttg tggttgaacc gtatctggac 1200 gtggtagact ctcgtcctcg tgtagagtag gtcctccaca ttgtacatct tgaaatatag 1260 gggatttgat atctcccagg tatacacgcc attctctgcc tgatgtgcag tgatgagttc 1320 ccctgtgcgt gaatccatgc cctgcgcagt ggatgtgaac gtatatggag cacccgcact 1380 gtagatcaat tcgtcttcgt cgtgttgccc tctttctttt agctgcccga tgttgaactt 1440 tgatagaggg gggagttgag aaagacgaat tgcgcattgt gctttgtcca attatttaat 1500 gctgagtttt cctctttgtc gaggaaagat ttataactgg ccccctcgcc aggattgcaa 1560 agcacgatgc atgggatacc tcctttaatt tgaactggct ttccgtattt gcagtttgat 1620 tgccagtccc tttgggcccc gataagttct ttccagtgct ttaactttag atagtgcggt 1680 gcgacatcat caatgacgtt atactgcaca tcgtttgaat acacctttga attgaaatcg 1740 aggtgaccgc tcaagtaatt gtgggaccct aatgcacgtg cccacatggt cttccctgtc 1800 cttgaatcac cctcgattat tatactgata ggcctctccg gccgcgcagc ggcatccctt 1860 ccgaaatagt catgtgccca agattgcatc tcgacaggca cgttagtgaa cgacgagagg 1920 ggaaacggag gaacccacgg ttctggagcc tttgcaaata tacgctctaa attcgaacga 1980 atattatgat gctgaagaac ataatctttt ggctgttcct cctttaatat attgagggcc 2040 tccatgactg atcctgcgtt aagaaccttg gcatacgtgt cgttggcaga ttgctgacct 2100 cctctagctg atcttccatc gatctggaaa actccatgat caacgaagtc tccgtctttc 2160 tccacgtatg ccttgacatc tgacgagctc ttagctgcct gaatgttcgg atggaaatgt 2220 gctgaccttg ttggggatac aaggtcgaac aatcgttcgt tcgtgcactg gtattttcct 2280 tcgaactgta tgaggacgtg cagatgaggt tgcccatctt cgtgtaattc tctcgcaaca 2340 cgaacgaata gtttattgac tggtattgtt aaggctaaga gttgggaaag tgcttcttct 2400 ttcgaaagag aacacttagg ataagtgagg aaatagtttt tggcatttaa acgaaatcgt 2460 ttcgggagtg gcatatttgt aaataagagc ttgtacaccg attgggagct ctcacaaagt 2520 ccgaatgaat cggtgtattg gtgtacaata tatactagaa ccctcaatag aactttcaat 2580 ctcgatcgaa cacgtggcgg ccatccgtta taatatt 2617 //