ID JF795479; SV 1; linear; genomic RNA; STD; VRL; 7049 BP. XX AC JF795479; XX DT 26-SEP-2011 (Rel. 110, Created) DT 10-OCT-2016 (Rel. 130, Last updated, Version 2) XX DE Redbud yellow ringspot virus RNA-dependent RNA-polymerase gene, complete DE cds. XX KW . XX OS Redbud yellow ringspot-associated emaravirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Fimoviridae; Emaravirus. XX RN [1] RP 1-7049 RX DOI; 10.1016/j.virusres.2016.05.027. RX PUBMED; 27262621. RA Di Bello P.L., Laney A.G., Druciarek T., Ho T., Gergerich R.C., RA Keller K.E., Martin R.R., Tzanetakis I.E.; RT "A novel emaravirus is associated with redbud yellow ringspot disease"; RL Virus Res. 222:41-47(2016). XX RN [2] RP 1-7049 RA Laney A.G., Gergerich R.C., Keller K., Martin R., Tzanetakis I.E.; RT ; RL Submitted (08-APR-2011) to the INSDC. RL Plant Pathology, University of Arkansas, 495 N Campus Dr PTSC 217, RL Fayetteville, AR 72703, USA XX DR MD5; cef932f8aea01d874f90c88c824a2819. XX FH Key Location/Qualifiers FH FT source 1..7049 FT /organism="Redbud yellow ringspot-associated emaravirus" FT /segment="RNA 1" FT /host="Cercis canadensis" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="15-May-2009" FT /db_xref="taxon:1980432" FT CDS complement(110..7009) FT /codon_start=1 FT /product="RNA-dependent RNA-polymerase" FT /note="p1" FT /db_xref="GOA:G3G862" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="UniProtKB/TrEMBL:G3G862" FT /protein_id="AEO95760.1" FT /translation="MDKLKKVEYESTVHDLKEGKIFDDDIFSKFMKLVGKTISSYTITS FT KKKEVEAVYHQCVSSGEFMPELIDIATRMIHSPPSKNQIDFALTIVQLLESARHDELGY FT VVALKLQNCGYNVIATDFKIKDFFPGINSILTPDILYQDEHGNKFILELKVRNKLTDLK FT YYYDRYASVIKSEASVAVFNFIDDKFYEYGDYKLSTQINIIGDEFKAVTECIQLAKELR FT AKYSNYPQYILYSTEAQDIIQEDLISGFDEIYKELEGYEEIKGLFGEHWDDIIKNIDEY FT NLVDNEEAVHEDLMQTEANLQQYCVKHMADYKQHRYRNYEKVGSYNQTKLLNKNVDELI FT DRRNEKKYHIVENYKPSVYIPISKTIKLTSYDGSRLKFYRDAFIDIKISGDTYSRSAYN FT LIDSIFNTISVELLVTKDSKIDHKLYKDVLDPEFVKTIFDETPKYRKVAHISNITSDVT FT ILANNSFSINSHTDPMMKQNICGYKNKHYDADRKGKDCLLYSKASNDINKFLMCASKVF FT NSEHHAGVYLNDLVTLESMSIRHKDSDIPIQARTKYLEHLYNCHVIFKNIISLNTVNSH FT KFRLLQTPDPNTILVLLPNADALKGNPLRYFCINILDKDCDDDIELNKLLGIYHSHTTT FT KKYTIMLSKVISLNVTRMKLLSNSFCKYTLLISYYSQFKKKIPINIQTMCWLLTQFVTI FT SSLTITDVYKNIIMAIYSDYSNIDNLIEDKLECRPRTISQIYLMKLMFTGIIKASDQLD FT KIILSKNEAQVDDSGELTMTGFNKSLKLRLPISDISTNNPKEVIHEAFILFYLGNKGLH FT GSPQELLNLYHTPFQFEKEYQAMIDNYGCYTYEMGNYSNMSFSYEAMQLTAKYAYAKLL FT NKTREIRETLKSYLCFDDPILTIKQFSSTKSMVSNSIPKEVESDIKINHKTDLLGLERF FT VDGQKIDSPEEFVKEMNVRINKINTEKKAQVDQNVKNNLSKLSKGVTLLPLLELHVKGD FT VKFIGFTKTKYAKAVGGDFVKQTSTKVFDEFYRISDEEGISTLRSFYMNYLNKHDLLVR FT IFYKDQRTADDREIYTGNAQVRLCLYPIEMVFKSVCKFIPEEAITISGDQKQKRLLDQR FT LALLKTKKHMDRSGKKTEIYSVSSDASKWSARDLFPKFILALSVNPFLTKNEKYFVLYL FT MIKYYDKKIVLTDSAFLNILRFAKPGNSGPYEAMTKDYTSNNFKVRSNWLQGNLNLTSS FT FVHHCSTLMTEMMLSVLSEQEGFQAVVTSMVHSDDSTYDFLIATDGNSSTEYISKQDIG FT KTIISLLSFSNMKHCITLNEKKTYISTFYKEFLSTTIVGNELFFFYMADILPIASDTSY FT TSPVGDFSSYNGYINNSFSHACPIDVLKPAICLINHLTLATYNMQYTSEKNPKSLIGDS FT IDLPMQIYPRYKLDLSLAGSIPYYSADAFNILHDMLEMLDKANEIKSSLIESIVDEELI FT QRYLDVIKADFPTKYRYLQYCMLTMDYSQYERDDQDPYNIIDYDLSQKSIINVVSINKG FT ARIKKTHTYQKYLEDEKNIKLTCATYPMWCISKPKDHSLIKLNILSNYSNPNFKDSLIY FT SKPAIDYGRRIINSNRSLYTLSSHLFEKEKPKNLKTIYNQLSKKSAEIILTPESVMKYL FT SIYLFSEKKISAALQIYYSKRTVTYMDRPEFTKVIMPKSVYSEEYGRNSINSMFEHLLV FT QKYCDIDDIDPKAERFIKICEYTLERLPSHIKLYYNPEDVDEQFIDYMNFKYSNNNVEE FT CLISTNDIDSYQMTVYHNKVKFQGLMIRYYTDIKQTLENPSYNIPNYVSPNSIIMTIDS FT LMKRDSISTKIYLAHTKANRFDDYWLGRFGMYADNKFFVKYKLGYRIKIATDNMLAPTM FT TKVKSTYEAVGMLTKLLCTDQELLSELMSDEEFTIGGFTINELLSEMKMTNDINNNLLL FT YAFDQIQYPTFLRVLELNNRIWNYWVLPTDTNINDPDASIALYNYKSAFMRVETVGINN FT GVSFTITLAKSGYLPEDCVPIMLKQVCKDYASQLRRAIIMKNVKDSYNQKGFYINSYGR FT LARPYDKDKHCIGTIKVCNIKSIRPQYTIADGIIRQMVVVDTPLFSNEFVFKFKHHVDD FT DYYINNLVDNMELQPSLICTHLIEREYITNNFEYYKEISPYMGSGHYMQLFAINRGFRN FT YADKIDISKFARLLHISNHIKDNHPNDVIVKQSQSLKLTCLQMGLDLNKKTKPDAFINS FT LMKYKFDQSYYTDFLDLYSKNESTPYENLIRFIHCTNNQGPLMNKIILAVLTILKCYPS FT RYIDQDDDVTFD" XX SQ Sequence 7049 BP; 2131 A; 1190 C; 1079 G; 2649 T; 0 other; agtagtgttc tccctaaata ctatatagaa agaaaatcac aagcaaaata ataaaggtaa 60 acttagaaga aatcaattaa tagcaaatga attaagtaca aacccacatt tagtcaaatg 120 ttacatcatc atcttgatca atgtatcgtg aaggataaca tttcaaaatt gttagtacag 180 ccaatatgat cttattcatt aatggccctt gattatttgt gcaatgtatg aatctaatta 240 agttttcata tggtgttgat tcattcttac tatataaatc taagaagtct gtgtaataag 300 attgatcaaa cttatatttc attaatgagt ttataaatgc atcaggcttt gtcttcttat 360 ttaaatccaa acccatctgt aagcatgtta attttaagct ttgtgattgc ttgactatta 420 catcattagg atgattatct tttatgtgat tagatatatg tagcagcctt gcaaatttgc 480 ttatgtcaat tttgtctgca taattcctaa accctctatt tattgcaaat aactgcatat 540 aatgtccaga acccatatat ggactaattt ccttataata ttcaaaatta ttggttatat 600 attctctctc aatgaggtgt gtacatatca ggcttggttg tagctccata ttatctacta 660 aattattaat ataatagtca tcatcaacat gatgcttgaa tttaaacaca aattcattac 720 taaataatgg agtatcaact acaaccatct gccttataat gccgtcagct attgtatatt 780 gtggtcttat cgactttatg ttgcaaacct ttatggtacc tatgcaatgt ttatctttgt 840 catatggcct tgccagcctc ccataactgt tgatataaaa ccccttttgg ttgtaagaat 900 ctttcacatt tttcatgatt atagcacgac gtagttgaga tgcataatcc ttgcaaacct 960 gtttaagcat tattgggaca caatcttctg gtaggtaacc actttttgct aatgttatag 1020 tgaatgatac accattattt attccaactg tctccaccct cataaaagca cttttgtaat 1080 tgtacaatgc tattgacgca tctggatcat tgatgttagt atcagttgga agcacccaat 1140 aattccagat tctattattt aattctaaca ctcgtaagaa cgtaggatac tgtatttgat 1200 caaatgcgta taaaagtagg ttattattta tgtcattggt catcttcatt tctgataata 1260 attcattaat agtgaatcca cctattgtaa actcttcatc actcattagc tcacttaata 1320 attcttgatc tgtacagagt agttttgtga gcatcccaac tgcttcatat gtgcttttca 1380 ctttcgtcat tgtgggagcc aacatattat ctgtagcaat tttaattcta tatcctagtt 1440 tatatttcac gaaaaattta ttgtctgcat acattccaaa tctacctagc caatagtcat 1500 caaacctgtt agcctttgtg tgtgctaaat atatctttgt ggatattgaa tctctcttca 1560 ttaatgaatc tattgtcatt atgatggagt taggtgacac atagtttggt atattatatg 1620 atggattttc taatgtttgc ttgatatctg tataataacg aatcatcaat ccctggaatt 1680 tcactttatt atgataaaca gtcatctggt aactatcaat atcatttgtg ctaattaggc 1740 attcctctac attattgttt gagtatttaa aattcatgta atctataaat tgctcatcaa 1800 catcctctgg attgtaatat agtttaatat gggaaggtag tctttctaat gtgtattcac 1860 atatttttat gaatctttct gcctttgggt caatatcatc tatatcacaa tatttctgta 1920 ccagcaagtg ctcaaacatt gaattgatac tattcctgcc atattcctca ctgtaaacac 1980 ttttaggcat aatcactttt gtaaattcag gtctatccat ataggttaca gttctctttg 2040 aataatatat ttggagggct gcacttatct tcttctcact aaacagataa atgctcaaat 2100 acttcatgac agattcaggc gtcaatataa tttcagctga tttttttgaa agttggttgt 2160 aaattgtttt aagatttttt ggtttttctt tctcgaatag atgtgagctc agagtgtaca 2220 agctgcgatt ggagttaatt atccttctcc catagtcaat tgctggtttt gagtaaatca 2280 acgagtcttt gaagtttgga tttgaataat ttgacagtat atttaatttt atcaatgagt 2340 gatcctttgg ctttgatata caccacatag ggtatgtggc gcatgttagc tttatatttt 2400 tctcatcttc aagatacttc tggtatgtat gagtcttttt tattctagca cctttattaa 2460 ttgatacaac gttgataatg cttttttgac ttaagtcata atcaattata ttgtatggat 2520 cctgatcgtc tcgttcatac tggctgtaat ccatcgtcag catgcaatat tgtaaatacc 2580 tatatttcgt tgggaagtca gctttgatca catccaaata tcgttgtatc aactcctcat 2640 caacaatgga ttcaattagt gaacttttaa tttcatttgc tttgtctagc atttctagca 2700 tgtcatgtaa tatgttgaat gcatcagcag aataatatgg aatagaacca gccaaagata 2760 aatccaattt ataccttggg tatatttgca ttggtagatc tattgaatcg ccaattagtg 2820 attttggatt cttctcagat gtatattgca tgttgtatgt tgcaagtgtt aaatggttga 2880 ttagacatat cgcaggcttt aaaacatcaa tagggcatgc atgtgaaaac gagttattga 2940 tgtaaccatt gtaagatgaa aaatcaccta caggagatgt ataagatgta tctgatgcaa 3000 ttggtagaat atctgccata taaaaaaaga ataactcatt gccaactata gttgtagaca 3060 aaaattcctt gtaaaatgtg ctgatatatg tcttcttttc atttagtgtt atacagtgtt 3120 tcatattact aaatgacaac agtgatataa ttgtctttcc aatgtcttgc ttacttatat 3180 attctgtgct tgaatttccg tcagttgcaa ttaagaaatc ataggttgag tcatctgaat 3240 gcaccatgct ggttactaca gcttggaatc cctcttgctc agataagaca ctcaacatca 3300 tttcagtcat tagagtacta cagtgatgga caaatgatga tgtcaagttg aggttgcctt 3360 gtaaccagtt gctcctaact ttgaaattgt ttgaagtgta atctttagtc atagcttcat 3420 atgggccact gtttcctggt tttgcaaacc ttaatatgtt taaaaatgct gaatcagtta 3480 agacgatctt tttatcataa tactttatca ttaaataaag tacaaaatat ttttcattct 3540 ttgttaaaaa tggattgaca gataaagcta gtataaactt tgggaataaa tctcttgctg 3600 accattttga tgcatctgat gacactgagt atatttcagt tttcttacca gagcgatcca 3660 tgtgtttctt agtcttaagt aaagctaaac gttgatccaa caaccttttc tgtttttggt 3720 caccagaaat cgttattgct tcttctggta tgaatttaca aacagacttg aataccattt 3780 caatagggta aagacataac ctcacctggg cattaccagt ataaatttct ctatcatcag 3840 cagtcctttg gtctttatag aatatcctaa cgagtaaatc atgtttattg aggtagttca 3900 tataaaatga cctcaatgtt gatatccctt cttcatctga tattctataa aattcatcaa 3960 agacttttgt gctggtctgc ttgacaaaat caccacccac agcttttgca tattttgtct 4020 tggtgaatcc tataaattta acatcacctt tcacgtgtaa ctctaataat ggtagaagtg 4080 taaccccctt tgacaattta gataaattat ttttaacatt ttgatcaact tgtgcttttt 4140 tttcagtatt tatcttatta attctaacat tcatctcttt gacaaattcc tctggactat 4200 caatcttttg accatcaaca aatctttcta atccaagcaa gtctgtttta tgatttatct 4260 ttatatcaga ttcaacttct ttaggtattg aattagacac catagatttt gttgagctaa 4320 attgtttaat tgtcaaaatt ggatcatcaa agcataagta agatttgaga gtttctctaa 4380 tttctcttgt tttatttaat agttttgcat atgcatattt agctgtgagc tgcatagctt 4440 catatgaaaa ggacatatta gagtagtttc ccatctcgta tgtataacaa ccataattat 4500 caatcatagc ttggtattct ttttcaaatt gaaatggtgt gtgatagaga ttgagaagct 4560 cttgtggaga cccatgtaga cctttatttc ctaaatagaa taaaataaat gcctcatgaa 4620 tgacttcttt tggattgttc gttgaaatgt cactaatagg caacctcagc ttaagagact 4680 tattaaaacc ggtcatcgtt aactcaccag aatcatccac ttgtgcttca tttttactaa 4740 gaatgatctt atctaattgg tcactagctt tgattatacc tgtgaacatt agcttcatta 4800 gatatatttg cgatattgtt cttggcctac attccagttt atcttctata agattatcta 4860 tattagaata atctgaatat atagccataa ttatattttt atatacatca gtgatagtca 4920 atgacgagat tgtcacaaac tgagttagca accaacacat tgtttgaatg tttattggga 4980 tcttcttttt gaattggcta taatatgata tcaataaagt gtacttgcag aaggaattag 5040 acaagagttt cattcttgta acattgagag atatcacctt tgacagcatt attgtgtatt 5100 tcttagttgt cgtatgagaa tgataaattc cgagcaactt attcaattca atatcatcat 5160 cacaatcttt atccaatata tttatacaga agtatcttaa tgggttaccc tttagtgcat 5220 cagcgtttgg tagaagcact aagattgtat ttgggtcagg ggtctgtagc aatctaaatt 5280 tgtgagagtt gactgtattc aatgatataa tgttcttaaa tataacatga caattgtaca 5340 aatgttcaag gtatttagtt ctagcttgga tgggaatatc agaatcctta tgcctaattg 5400 acattgattc taatgtcaca aggtcattta ggtaaacacc agcatgatgt tcactattaa 5460 atactttgga tgcacacatt aggaatttgt tgatatcatt tgaagcttta gaatacagca 5520 ggcaatcctt tcccttccta tcagcatcat aatgtttatt tttataacca cagatattct 5580 gcttcatcat gggatcagta tgtgaattaa tcgaaaaaga gttattggca aggattgtaa 5640 catcactggt tatgtttgat atatgtgcta cctttctgta ttttggtgtt tcatcaaata 5700 tcgttttaac gaactctgga tccaggacat ccttgtatag tttatgatct atcttactat 5760 ctttagtcac caggagttct acactgatag tgttaaatat tgagtcaata agattgtaag 5820 cagaccttga gtatgtatca ccagagattt tgatatcgat gaaggcatct ctataaaact 5880 tcagccttga gccatcataa cttgttaatt taattgtctt tgatatcggt atgtagacac 5940 ttggcttata attctccaca atatgatatt tcttttcatt ccttcgatca attagctcat 6000 caacgttttt attcagcaat tttgtttggt tataagatcc aactttttca taatttctat 6060 atctatgctg tttataatca gccatatgtt taacacagta ctgttgtaga tttgcctcag 6120 tctgcatgag atcttcatgc acagcttctt cattatcaac tagattgtat tcatcaatat 6180 ttttaatgat gtcatcccag tgctcaccaa ataagccttt tatctcctca tagccttcta 6240 actctttata tatttcatca aatccactta ttaagtcttc ctgtatgatg tcttgagctt 6300 cagttgaata taatatgtac tgtggatagt tggaatactt agccctcaac tcttttgcaa 6360 gttgtataca ttcagtcaca gctttgaatt catcaccaat aatgtttatc tgtgtgctta 6420 gcttgtaatc accatattca taaaatttat catctataaa attaaatact gcaactgatg 6480 cttcactctt aatgactgat gcataccgat cataatagta tttcaaatct gtgagcttgt 6540 tacgaacttt aagctccaaa ataaatttgt taccatgttc gtcttgatat aggatatcag 6600 gcgtcaatat actatttata ccagggaaaa aatctttgat tttaaaatca gttgcaatga 6660 cattgtagcc acagttttgt agctttagag caacgacata accaagctca tcatgtcttg 6720 cactttctaa tagctgtact atggttagag caaaatcaat ttggttcttt gatggtggtg 6780 aatgtatcat tcttgtagct atgtcaatca actcaggcat aaattcacct gaagatacgc 6840 attgatgata aacagcttcc acctctttct tctttgaagt tattgtgtag ctggatatgg 6900 ttttaccaac taacttcatg aatttcgaga atatgtcatc atcaaatatc tttccttcct 6960 taaggtcgtg cactgtgctc tcatattcca ccttctttag tttatccatt ttaaatttct 7020 ttcaattagt aaatagggag ttcactact 7049 //