ID JF781586; SV 2; linear; genomic RNA; STD; VRL; 2249 BP. XX AC JF781586; XX DT 01-APR-2012 (Rel. 112, Created) DT 01-JUL-2014 (Rel. 121, Last updated, Version 3) XX DE Strawberry necrotic shock virus isolate SNSV-840 segment RNA 3, complete DE sequence. XX KW . XX OS Strawberry necrotic shock virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2249 RA Sharman M., Constable F., Perera R., Thomas J.E.; RT "First report of Strawberry necrotic shock virus infecting strawberry RT (Fragaria vesca) from Australia"; RL Australas. Plant Dis. Notes 6(1):54-56(2011). XX RN [2] RP 1-2249 RA Sharman M., Thomas J.E.; RT "Complete genome sequences and genetic diversity of subgroup 1 ilarviruses RT from eastern Australia"; RL Unpublished. XX RN [3] RP 1-2249 RA Sharman M.; RT ; RL Submitted (06-APR-2011) to the INSDC. RL Department of Employment, Economic Development and Innovation, Queensland RL Government, Department of Employment, Economic Development and Innovation, RL Ecosciences Precinct, GPO Box 46, Brisbane, Queensland 4001, Australia XX RN [4] RC Sequence update by submitter RP 1-2249 RA Sharman M.; RT ; RL Submitted (07-AUG-2012) to the INSDC. RL Queensland Department of Agriculture, Fisheries and Forestry, Queensland RL Government, Ecosciences Precinct, GPO Box 267, Brisbane, Queensland 4001, RL Australia XX DR MD5; 66218237f2fe8dbe999d4176cee907e1. XX CC On Jun 30, 2014 this sequence version replaced gi:381333925. XX FH Key Location/Qualifiers FH FT source 1..2249 FT /organism="Strawberry necrotic shock virus" FT /segment="RNA 3" FT /host="Fragaria x ananassa" FT /isolate="SNSV-840" FT /mol_type="genomic RNA" FT /country="Australia" FT /lat_lon="27.52 S 153.25 E" FT /collected_by="R.S. Greber" FT /collection_date="1979" FT /db_xref="taxon:243563" FT CDS 216..1112 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:H9TN31" FT /db_xref="InterPro:IPR002538" FT /db_xref="UniProtKB/TrEMBL:H9TN31" FT /protein_id="AFG22599.2" FT /translation="MALTPSFKALTFSADDESSLEKAVTEALSGSVELNMGIRRCAAFA FT AVNTEAFLCELTTKETKGFVSKFTDKVRGRVFVDHAVVHLMYIPVILNTTHAIADLKIK FT NLATGDELYGGTKVNLNEAFILTMTWPRSLFSDAVAAHRGLYLGGTVSCASSVPKGAKI FT GMWYPMWTEKVSNKQLYQQTTPIVNTKALETFTRTMISSDKEMRSLLRSRASIDIAAKT FT RENPVICSPSVNLLDNQTSGVDFTVKQVSAPTVAAIQNDDNAEASGTSVLESKMIPIEY FT SDGNVGSNSAGRNLLTV" FT CDS 1289..1957 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q6URJ4" FT /db_xref="InterPro:IPR002681" FT /db_xref="InterPro:IPR016405" FT /db_xref="UniProtKB/TrEMBL:Q6URJ4" FT /protein_id="AFG22598.1" FT /translation="MSVNRGKNVLNNNSNGCPTCFDKLDAAASNCARCMRNGGVTNRQR FT RNARRAANFRNQRPVPVVPVSAPTTSKSLKLPGNQVWVTRKPSDWAAKTVDTNDAITLK FT TIFNGIPEINDDTKIFRVLIGFVAVSDGTFGLVDEVVGDSIPDPPIIGRLGFKKNTYRS FT RDFRFDGKLTTQVANKAIVWCLDANRRDAKRVRLADFWVAISRPNPLMPPDEFLSGDSD FT " XX SQ Sequence 2249 BP; 602 A; 454 C; 530 G; 663 T; 0 other; gtattctctg agcataatac cacttatcaa tttgattccg aatcggacga tttccaacct 60 tgaattccta caggttgagg tctttggacc gatcaaattg atttgtcaat cagataccac 120 tatccgatcg aaggatcttc cgattaagcg ttttcccgaa cgtcggttgc tgttgggatc 180 gattggttag gaccgtcatc tttaaattgg ttaagatggc tttgactccc tcatttaagg 240 ctctgacatt ttctgctgat gatgaatcat cattggagaa ggcagttact gaagcgctgt 300 cgggatcagt tgaacttaat atgggaatta ggcggtgtgc cgccttcgca gccgtaaaca 360 ctgaagcgtt tctttgtgaa ttaactacca aagaaacaaa gggctttgtc agtaagttta 420 ctgacaaggt gcgtggtcgc gttttcgttg atcacgctgt tgtacatctt atgtacattc 480 cagtgatatt gaataccacc catgctattg cagacttgaa aatcaagaat cttgcaacgg 540 gtgatgaact ttacggtggg acgaaggtga atctgaatga agctttcata ttgactatga 600 catggccaag atcattgttt tccgatgctg ttgcagcgca tcgagggttg taccttggag 660 gtactgtttc atgtgcatct tccgtaccta agggcgcgaa gatagggatg tggtacccca 720 tgtggactga aaaggtgtcg aataagcagt tgtatcagca gaccacacct atagtcaaca 780 caaaagcact tgaaactttt actagaacaa tgatcagttc agataaagaa atgagaagtc 840 ttttgagaag tcgtgcctca attgacatag ccgccaagac aagagagaat cctgttattt 900 gttcacccag tgtgaacctg cttgacaacc agacttctgg tgtggatttt accgttaagc 960 aggtttcagc accgactgtg gctgccattc aaaatgatga taacgcagaa gcttccggga 1020 cttcagtttt ggaatcaaaa atgattccaa ttgaatattc cgatggaaat gttgggagta 1080 actcagcagg taggaacctg ctgacagttt gatcgttgtt atttgacatt ccggacatgg 1140 ggagttcttg gaatataggg actagtacct cagagaatct tgagtatttt tgtagtgaat 1200 tcttggaatt atagataagc tacttcttga gcctacctga gatgtatgat tactttgacc 1260 aagaatccag accaaaccat ccaacgccat gtctgttaac agggggaaga atgttttgaa 1320 taacaactcc aatggttgcc caacttgttt tgacaagttg gatgccgctg cgtctaactg 1380 cgcgaggtgt atgcgcaacg gtggtgttac taaccgccag cgtcgtaatg ccaggagggc 1440 cgctaacttt cgtaatcaga ggcccgtgcc tgttgttcca gtttcagctc ctaccacttc 1500 aaaatctttg aagttacctg gtaaccaggt atgggtcact cggaaaccga gtgattgggc 1560 tgcaaaaact gttgatacca acgatgcgat cacgttgaag accattttta atggtattcc 1620 cgaaatcaat gatgacacga agattttccg tgtcttaatt ggtttcgttg ccgtgtccga 1680 tgggacattt ggtttggtcg acgaagtcgt tggagattcg atccctgatc caccaattat 1740 aggtcggttg ggatttaaaa agaatactta tcgtagccgc gacttccgtt ttgacgggaa 1800 acttacaaca caagttgcta ataaagcaat tgtgtggtgc ctcgatgcta atcgtcgaga 1860 tgctaagcgg gtcagattgg cagacttttg ggtcgccata tcacgaccta atccgctgat 1920 gcctccagat gagtttctgt ctggggatag tgattgacta tctccaatcc tcgagagtaa 1980 tctcgagttg cctcacatta aaggtaattc ttgtgtgaga tgcggatatc accctatgta 2040 tgttgtagat caacatatat ggacgtgtga cgtatgtcgt caacgacaat acgcatagtt 2100 accacgcatc cgggtataaa tctatgtaat ccgttataga acattccgaa tcggacgatt 2160 tccgctcttt gagtgagacc tttgggtcga tgttctattg ttgccattaa taatttaaaa 2220 ttattaatga tgcctcccta aggagatgc 2249 //