ID JF755427; SV 1; linear; genomic RNA; STD; VRL; 8198 BP. XX AC JF755427; XX DT 15-AUG-2011 (Rel. 109, Created) DT 27-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Aichivirus A3 strain M-5 polyprotein gene, complete cds. XX KW . XX OS aichivirus A3 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Kodimesavirinae; Kobuvirus; Aichivirus A. XX RN [1] RC Publication Status: Online-Only RP 1-8198 RX PUBMED; 21909269. RA Phan T.G., Kapusinszky B., Wang C., Rose R.K., Lipton H.L., Delwart E.L.; RT "The fecal viral flora of wild rodents"; RL PLoS Pathog. 7(9):E1002218(2011). XX RN [2] RP 1-8198 RA Phan T., Delwart E.; RT ; RL Submitted (29-MAR-2011) to the INSDC. RL Virology, Blood Systems Research Institute, 270 Masonic Avenue, San RL Francisco, CA 94118, USA XX DR MD5; 102dc1472def9a278717a1ac0d12bd83. DR EuropePMC; PMC3164639; 21909269. DR EuropePMC; PMC3264332; 22114340. DR EuropePMC; PMC3541788; 22875254. DR EuropePMC; PMC4751110; 26256044. XX FH Key Location/Qualifiers FH FT source 1..8198 FT /organism="aichivirus A3" FT /host="Peromyscus crinitus" FT /strain="M-5" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="feces" FT /collection_date="2010" FT /db_xref="taxon:3070930" FT CDS 611..7930 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:G1C9J8" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:G1C9J8" FT /protein_id="AEM05831.1" FT /translation="MANTRVSRSVLSAVAKTSTHRVYHTVLDCYDRLYLNSYPQMLYPL FT PRSPSFPCPFCMYDEDLEFLSPESLCGEGAEPCWKCMSKSPRKKNNLVSPEDWLEDSDV FT QDWFEPQTYYSDFQQRVFDKIALLSLPGPFQAKTPEERAILGALQQLLKFPHLSPAQMP FT LAVKQLKRQGNSVTNIYGNGNNVTTDVGANGWSPTVSTGLGDAPVSASADTIPGRSGGA FT SSDKTGSVSVSSGNKVGSRFSKWWEPAAARALERATDATINGIEGAGKVASKAISRKLG FT SSSAPAPNSSTETPQPSLIALNPSATQSGNAAILTGSTAPSFLAYPTAKAVPLPNPDEP FT SQPGPSGDRTWLLDTVTWEQSQTAGWNIAGSNGMQWTSLESPSFPISTESNWGTQSGQA FT PTAYPLPFSFVRAYPDTPWAAMYDTHSMWNCGWRVQVTVNGSQFHAGALILYMVPEATT FT QTIESSRRNAGFVYPYVILNLYESNTATIEVPYISPTPNTSSGLHSPWTFYLQVLTPLT FT PPTGLPTSLSCSIYVTPVDTTFHGLRYVAPQHWKTRLVPGAGAFGSAVAGQELPLCGVR FT AFYPPNSYIPAQVHDWLEFAHRPGLMATLSWTMADEPGERLAILPVSPSAIAGTGTPIS FT YVLSLFSQWRGELAAHLLFTGSSQHYGRLVVCYTPAAPSPPTTMQQAMRGTYTVWDVNA FT ASTLEFTIPFISQSYWKTVDINNPDALLSTTGYLSVWVQNPLTGPTSAPASALVQGFLS FT AGESFNVRLMQNPALSSQSLSEDLDAPQDTANIENGAADNTPQPRTTFDYTENPLPPDT FT KLENFFSFYRLLPLTTNSPNLPLPITDVAQVPLDPIHWQSDADVSGLTAMLSCFTYISA FT DLRITLRISNPNGLPISLMVAFAPPGSTIPANPDAQSLSNFFMSEVPITASSSTLVSFS FT IPYTSPLSAIPTTYFGWEDWSGTNFGVLKTGSWGTLLLLPQPPSSESALLDLSLTCWIA FT FGNFKGWVPRPPPPLPPLPTPATSPEKTVAIVRQGARHTLGDVPPDDTVYIIRARRPTY FT VHWALRKVTPDGSAKQISLSREGLTAVVAYEPCEGEIYREVPLSSWSIAELQLGSPWDY FT SATNNCTHFVQRATNVDLPNTGFSLALGVGALALIAASAAGAAQALKGIRRQGLLTLTA FT DAETNKTLTQVSQSVTQAAQVVSNFDLAGPANSVSLAASDIREAATKVASSLNGFTEVI FT SDLKTSLFSKVTDAVESGVATFLTWLAKIFGYLLVLFGSPSPMSISGLLVIICADLAPH FT ARDFFTASGNVLSSLHFWIATKLGLTVTPEECEQAALEPQGLKDFNDGALAMRNVEWIG FT ETAWKWAHRILDWVRGKAKTDPQAKLADVHDEIMMHYSDSILALGTEKPPIDHITRAIS FT RCRELVSVAQDAKSGPHSAFLNQSLRNYTLALSQHRKRQVGPRPEPVVVYLYGPPGTGK FT SLLAALLAQTLAQRISGDPDDVYSPTAASCEYFDGYTGQAVHYIDDIGQDPEGRDWANF FT PNLVSSAPYILPMASLEEKGTHYTSRVIVITSNFHEPNERAARSMGALKRRVHLRINVT FT SNGVRFDPVNALNPIPGTQSKYFTSQTPLTLFQANVVRLDRDSIWTPSFSNMDELVDAI FT MARMDRSSGVSNSLASLIKRQGNRVVEATPREIPEEYADELVEALAHHRAVPCSLSLSH FT AISNNTPLETISQTLWRYRKPIFAATTFLAVVGFLCSIIPLARSIWQGREDSSSQPQAA FT YSGVPHQKSKPKTPKPIPTQHIQRQGISPAIPGISQNVVHVESGNGLEKNVMSGFYLFS FT RYLLVPTHLREPHHKTLLVGVDAYDWATLPTLELGELTLVHTPTSRQYKDMRRFIGAHP FT YPTGLLVSQLKSAPLYVRFSGNRVLDMNFPGAIVCEQAYGYHAATFEGLCGAPLVTDDP FT AGVKILGLHVAGVAGTSGFSAPLHTILPEILRFATTHQSLIIPTGEAKPGVNINRNSRL FT RPSPAYGAFPLKKEPAPLKRRDPRLNEGIDLDSQLFLKHGKGDQTEPWPGLEAAADLYF FT STFPPSLPVLTQEQAIHGTPNMEGLDMGQAAGFPWNTQGRSRRSLFDEPEPGYFVPKPE FT LQVEIDRTLEDPDYTYSTFLKDELRPTAKVENGLTRIVEAAPIHAIVAGRMLLGGLIDY FT MQARPGSHGSAVGCNPDVHWTEFFYKFSEFSQVFDLDYKCFDATLPSAAFSLVAKHLER FT LTGDPRVVKYIESIRHSHHIYGNQMYDMIGGNPSGCVATSILNTIINNICVLSALIQHV FT DFSPTKFQILAYGDDVIYATEPPIHPSFIRDFYQRHTPLVVTPANKGSDFPPTSTIYEV FT TFLKRWFVPDDRRPFYIHPVMDPDTYEQSVMWLRDGDFQDVVTSLCHLAFHSGPKTYER FT WCMKVREQCLKSGFAPNFLPYSYLQLRWLNMLAA" XX SQ Sequence 8198 BP; 1648 A; 2923 C; 1758 G; 1869 T; 0 other; gtaacttcaa gtgtgtgtgc tcgtaatctt gactcctgcc ggaatgccgc ccggttcagt 60 gaacaaacag ctaggcaagt ccctcccttc ccctgtggtc ggttctcacc ggccaccatc 120 cctcccccag cctgacgtgt tacaggctgt gcaaagcccc cgcgaaagct gctcacgtgg 180 caattgtggg tccccccttt gtcaagacac cgagtctttc tcccttaagg ctagcccggt 240 cccacgaacg tggaactggc aactagtggt gtcactacac gcctccgacc tcggacgcgg 300 agtgctgttc cccaagctgt aaccctgacc caagactgtg ctgcctggca agcaccgtct 360 gggaagatgt tccgctgtgg ctgccaaacc tggtaacagg tgccccagtg tgtgtagtct 420 tcctccagtc tccggactgg cagtcttgtg taaagatgca gtgtaaggtt caagtgccaa 480 atccctggaa ggagtgaccc tctactgccc taggaatgct gtgcaggtac ccccaacttc 540 ggttggggat ctgagcacag gctaattgtc tacgggtagt ttcatttccc atcctctctt 600 ttttggcatc atggcgaaca cacgggtttc acgatctgtg ctctccgctg ttgccaaaac 660 ttctacccac agagtctatc acacagttct tgactgctat gacaggctct acctcaattc 720 ctacccccaa atgctctacc ccctaccccg ctcaccctct ttcccttgcc ccttctgcat 780 gtatgatgaa gacctggaat ttctctcacc cgagtcgctc tgcggcgagg gcgctgagcc 840 atgttggaag tgcatgtcaa agtccccccg aaagaaaaac aatttggttt cccctgaaga 900 ctggctcgag gattctgatg tgcaggactg gttcgaaccc cagacctact actcagattt 960 tcaacagcgc gtcttcgata aaattgctct tctctctctc cccggtccat tccaagccaa 1020 aaccccagag gagcgcgcca ttctcggagc gctccaacaa cttctcaaat ttccccacct 1080 ctcccccgca cagatgcccc tcgccgtgaa acaactcaaa cggcagggga attctgtcac 1140 caacatctac ggcaatggta acaacgtcac tactgacgtt ggtgccaatg gctggtcccc 1200 caccgtgtcc actggactcg gtgatgcccc tgtctctgca tcagcagaca ccatccccgg 1260 tcgctccggg ggtgcgtctt ctgacaaaac tggatctgtt tcagtctcct caggcaacaa 1320 ggtgggctcc cgcttctcca agtggtggga gccggctgcc gcgcgcgctc ttgagcgtgc 1380 gaccgatgcc accatcaacg gcatcgaagg agccgggaag gtggcctcca aggccatctc 1440 ccgcaagctg gggtcatcca gcgccccagc gccaaattca tctacagaga ctccccaacc 1500 ctccctcatt gccctcaacc cctctgccac tcaatctggc aacgcggcga tcctcactgg 1560 atctactgct ccttcttttc tcgcttaccc tacagctaag gctgtccctc tccccaaccc 1620 cgatgaaccc tcccagcctg gcccctctgg tgaccgaact tggttactag acacggtcac 1680 gtgggaacaa tcccaaactg caggctggaa cattgcaggc tcaaatggca tgcagtggac 1740 ctccctggaa tccccttcct tccccatctc cacagaatcc aattggggca ctcaatctgg 1800 ccaagccccg actgcctatc cccttccctt ttctttcgtg cgtgcgtacc cggacacccc 1860 ctgggctgcc atgtacgaca cccactccat gtggaattgt ggttggcgtg tgcaggtcac 1920 cgtcaacggt tcgcagttcc acgctggagc cctcatcctt tacatggtcc cggaagcgac 1980 tactcaaacc atcgagtcat ctcgtcgcaa tgccgggttc gtgtacccct atgtcatcct 2040 caacctctat gagagcaaca ctgctaccat tgaggtcccc tacatttccc ccacccccaa 2100 tacctcttct ggtctacaca gcccctggac attctacctc caggttctca cccccctgac 2160 ccctcctact ggcctcccca cctctctgtc ttgttccatc tatgtcaccc ctgttgacac 2220 aaccttccac ggcctccgct atgtggcccc ccagcattgg aagacccgat tggtacctgg 2280 cgcaggtgcc ttcgggtcgg ccgttgctgg ccaggagctc ccactgtgcg gagttcgtgc 2340 cttttacccc cccaactcct acatccccgc ccaggtccac gactggcttg agttcgcgca 2400 ccgtcccgga ctcatggcca ccctctcgtg gaccatggca gatgaaccag gcgaacgcct 2460 ggcgatcctt cctgtctccc cttctgccat tgctggcaca ggtactccca tatcctatgt 2520 cctctctctc ttctcccaat ggcgcggtga gctcgccgcc caccttctct tcacaggttc 2580 ttcccagcac tatggccgct tggtcgtgtg ctacacccct gctgccccct ccccccccac 2640 caccatgcaa caggcaatgc gtggtacgta cactgtctgg gacgtgaacg ccgcctccac 2700 cttggaattc actatcccct tcatctccca gtcatactgg aagacagtgg acatcaacaa 2760 ccccgatgcc ctcctttcta ccactggcta cctttctgtt tgggtccaga accccctcac 2820 tggacccact tctgcccctg cctcggcatt ggttcaagga ttcctctccg ctggggagtc 2880 cttcaatgtc cgcctcatgc agaaccctgc tctttcctca caatctctgt cggaggacct 2940 ggatgccccc caggacaccg ccaatatcga gaatggcgcc gcggacaaca ccccacagcc 3000 gcgcaccact ttcgactaca cagagaaccc ccttccccct gacacaaaac ttgaaaattt 3060 cttttctttc taccgcctcc tccccctcac aactaattcc cccaacctcc ctctccccat 3120 cacagatgtg gcccaagttc cccttgaccc catccactgg caaagtgacg ccgatgtctc 3180 cggcctcact gctatgcttt cctgtttcac ctatatctct gctgatctcc gcatcacctt 3240 gcggatttct aaccccaatg ggctaccaat ctccctcatg gtggcctttg ccccccctgg 3300 atcaaccatc cccgcaaacc cagacgccca atccctctcc aatttcttca tgtctgaggt 3360 ccccatcact gcttcatctt ccaccctagt ctcattttca atcccttaca cctcccccct 3420 ctcagccatc cccaccactt actttggctg ggaggactgg tctggaacca acttcggtgt 3480 cctcaagacc gggtcctggg gtactcttct tctcctgccc cagcccccct cctcagaatc 3540 cgccctcctt gacctctctc tcacctgttg gattgccttc ggcaatttca aagggtgggt 3600 cccccgcccc cctcctcccc tccctccact ccccaccccg gccacttccc cggagaagac 3660 tgttgccatc gtgcggcaag gcgctcgcca cacccttggt gacgtcccac cagacgacac 3720 agtctacatc atccgtgcgc gtagaccaac ttacgtgcac tgggccctcc ggaaagtcac 3780 tcctgatgga agtgccaaac aaatttccct ttcccgtgaa ggcctcaccg ccgtggtcgc 3840 atacgaacca tgtgaaggtg agatctatcg ggaagtccca ctctcctcct ggtccattgc 3900 cgaacttcaa ctcggcagcc cgtgggatta cagtgccacc aacaactgta cgcacttcgt 3960 ccaacgggcc accaatgtgg atctccccaa caccggcttc tcattggccc ttggagtcgg 4020 tgcattggct ctcatcgcgg cctcggctgc tggtgccgct caagcgctta aaggcatcag 4080 gcgtcagggt cttctgaccc tcaccgccga cgcagagacc aacaagaccc ttacccaagt 4140 ctcccaatct gtcactcaag ccgcccaggt tgtttccaac ttcgacctgg ccggccctgc 4200 caattctgtc tctcttgcag cctccgacat ccgtgaagct gccacgaaag tggcttcttc 4260 cctcaacggc tttacggaag tcatttctga cctcaagacc tctctctttt ctaaagtcac 4320 tgacgctgtc gagtccggtg ttgctacctt tctcacctgg ctcgccaaaa tcttcggcta 4380 tctccttgtc ctctttggtt ccccctcccc aatgtccatc tctggacttc tagtcatcat 4440 ctgtgctgat cttgcccccc atgcccggga tttcttcact gcctcgggca atgtcctctc 4500 ctccctccac ttctggatcg cgaccaaact tggcctcacg gtcacgccag aagagtgtga 4560 acaggcggcc ctggaacccc agggtctcaa agatttcaat gacggtgcac tcgccatgcg 4620 aaatgtcgag tggatcggag aaaccgcctg gaaatgggcc caccggatcc ttgactgggt 4680 ccggggcaaa gccaaaacag accctcaagc caaattagct gatgtgcatg atgaaatcat 4740 gatgcactac tcggattcca tattggccct tggaaccgag aaacccccaa tcgaccacat 4800 cacacgtgca atctcccgct gtcgggagct cgtgtctgtg gcgcaggacg ccaaatcagg 4860 cccccactcg gcgttcctga accaatccct cagaaattac accttggccc tttctcaaca 4920 ccgcaagcgc caggtcggcc cccgaccgga acccgtggtg gtctacctct acggaccccc 4980 cgggaccggg aagtccctct tggccgccct ccttgcccaa acccttgccc aacgcatatc 5040 cggtgatccg gatgatgtgt actcccccac cgctgcctct tgcgagtact tcgatgggta 5100 tactggccag gccgtccact acatcgacga cattggccag gacccagaag gtcgcgattg 5160 ggcaaatttt cccaaccttg tctcctccgc cccctacatc ctccccatgg cctccctgga 5220 agaaaaaggt acacattaca cttctcgtgt cattgtgatt acctccaact tccatgagcc 5280 caatgagcgc gcagcgcgct cgatgggagc cctcaagagg cgcgtccacc ttcggatcaa 5340 cgtcacctcc aatggcgtga ggtttgaccc ggtgaacgcg ctcaacccaa tccctggaac 5400 ccaatccaaa tacttcacct ctcaaacccc tctcaccctt ttccaagcca acgtggtccg 5460 cttggaccgc gattcaatct ggacaccctc cttctccaac atggacgagc tcgtggacgc 5520 tatcatggcg cgcatggacc gttcatccgg tgtttcaaat tctcttgcct ccctcatcaa 5580 gcgtcagggc aaccgcgtgg tcgaagcaac tccccgggaa atccccgagg agtatgctga 5640 cgagctcgtg gaagccttgg cacaccacag ggctgtaccc tgttccctct ccctctccca 5700 cgccatctcc aacaacaccc cccttgaaac catctcccag accctctggc gctacaggaa 5760 acccatcttc gccgccacca ccttcctggc ggtggtcgga ttcctttgct ccatcatccc 5820 cctcgctaga tcaatctggc agggccgcga agactcttcc tcgcagcccc aagcggcgta 5880 ctcaggtgtg ccgcaccaaa agtcaaaacc caaaactccc aaacccatcc ccacccaaca 5940 tatccagcgc caggggatct ctcccgcaat ccctggcatt tcccagaatg tcgttcacgt 6000 cgagtccgga aacggcctcg agaagaatgt catgtctggc ttctacctct tctcccgcta 6060 cctacttgtc cccacccacc tacgtgagcc ccaccacaag accctcctcg tgggcgttga 6120 cgcctacgat tgggccaccc tccctaccct cgagcttggt gagctcaccc tagtccatac 6180 cccaacctct cgccagtaca aggacatgcg ccgcttcatc ggcgcacacc cctatcccac 6240 tggccttctt gtctcccaac ttaaatcagc cccgctctat gtccgcttct ccggcaaccg 6300 cgtgcttgac atgaacttcc ccggtgccat cgtctgtgag caggcgtacg gctaccacgc 6360 agctaccttt gaaggtctgt gtggtgcccc gcttgtcacg gacgatcctg ccggggtcaa 6420 gatccttgga ttgcacgtgg ccggagtggc tggtacgagt ggtttctcag cccccctcca 6480 taccattctc cctgaaatcc tcagatttgc cactacccac caatccctca tcatccccac 6540 tggagaggcg aagcccggag tcaacatcaa ccggaactcg cgcctccgtc cctctcccgc 6600 ctatggtgcc ttccccctca agaaggaacc agcccccctc aagcgaagag accctcgcct 6660 caacgagggg atcgaccttg attctcaact cttcctcaaa cacggtaaag gtgaccagac 6720 cgagccttgg cccggcctgg aagctgctgc cgatctctac ttctcaacct tccccccctc 6780 cctccccgtt ctcacccagg aacaggcgat ccatggaacc cccaacatgg aagggcttga 6840 tatggggcag gctgcgggtt tcccatggaa tacccaaggc cggtcccgtc gatcgctctt 6900 tgatgaacct gaacctgggt actttgtccc caaacctgaa ctccaggtag agattgaccg 6960 gacacttgag gatccagact acacttactc cacctttctt aaagatgagc tcagacccac 7020 tgccaaagtg gagaacgggc tcaccagaat cgtcgaggcg gctcccatcc acgcgatcgt 7080 ggcgggccgg atgctcctcg gtggtcttat tgactacatg caggcgcgcc ccggttccca 7140 cggtagtgcg gttggttgca accctgacgt ccactggacc gagttcttct acaagttctc 7200 tgagttctca caagtgtttg atctggacta caagtgcttt gatgcaactc tgccttctgc 7260 tgccttctcc cttgtggcta aacacctgga gcgcctcacc ggtgaccccc gtgttgtgaa 7320 atacatcgaa tccatccgcc attcccatca catctatggc aaccagatgt atgacatgat 7380 cgggggaaac ccctccggat gtgtggccac ttccatcctc aacaccatca tcaacaacat 7440 ctgcgtgcta tcggccctaa tccagcacgt ggacttttcc cctaccaaat ttcagatcct 7500 cgcgtacggt gacgacgtca tctacgcgac ggaaccccca atccacccct cctttatcag 7560 agacttctac cagcgtcaca ccccgctggt ggtcacccct gctaacaagg gctctgattt 7620 cccccccacg tccacgatct atgaagtcac cttcctcaaa cgctggtttg ttccagatga 7680 caggcgccca ttctacattc accctgtgat ggaccctgac acctacgagc aatcagtgat 7740 gtggttgcgt gatggagact ttcaagacgt ggtcacctca ctctgtcatt tggccttcca 7800 cagcggaccc aagacatatg agcgttggtg catgaaagtg cgcgagcagt gcctcaagtc 7860 tgggttcgct ccaaatttcc tcccctactc ttacctccaa ctccgctggc ttaatatgct 7920 ggcagcctga tagttaggga acccaaccac ggtggaatac ccgtggtgct agttagttag 7980 aaccctttac tctcctccat ggtgatataa agaccaccca caatctttcg ggtgagcccc 8040 taagccatgg ttgtactgtg ctatcttcta agacgtcctc cctctggacg cactttcccc 8100 ccggtgccgc gcctcccctg ggagctgcac ccgcggaccg gggtagtctt tgaacttttc 8160 taactgttct taaaaaaaaa aaaaaaaaaa aaaaaaaa 8198 //