ID JF742759; SV 1; linear; genomic RNA; STD; VRL; 6119 BP. XX AC JF742759; XX DT 06-NOV-2011 (Rel. 110, Created) DT 06-NOV-2011 (Rel. 110, Last updated, Version 1) XX DE Astrovirus MLB2 isolate MLB2/human/Stl/WD0559/2008, complete genome. XX KW . XX OS Astrovirus MLB2 OC Viruses; Riboviria; Astroviridae; unclassified Astroviridae. XX RN [1] RP 1-6119 RX PUBMED; 22099095. RA Holtz L.R., Wylie K.M., Sodergren E., Jiang Y., Franz C.J., Weinstock G.M., RA Storch G.A., Wang D.; RT "Astrovirus MLB2 Viremia in Febrile Child"; RL Emerg. Infect. Dis. 17(11):2050-2052(2011). XX RN [2] RP 1-6119 RA Holtz L.R., Wylie K.M., Sodergren E., Jiang Y., Franz C.J., Weinstock G.M., RA Storch G.A., Wang D.; RT ; RL Submitted (29-MAR-2011) to the INSDC. RL Pediatrics, Washington University School of Medicine, 1 Children's Place, RL St. Louis, MO 63110, USA XX DR MD5; f5412ebb9ffc8e50f0aca97444a8f75c. DR EuropePMC; PMC3310569; 22099095. DR EuropePMC; PMC3744683; 23950127. DR EuropePMC; PMC5100189; 27826361. DR EuropePMC; PMC6081416; 30087387. XX FH Key Location/Qualifiers FH FT source 1..6119 FT /organism="Astrovirus MLB2" FT /host="Homo sapiens" FT /isolate="MLB2/human/Stl/WD0559/2008" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="stool" FT /collection_date="2008" FT /db_xref="taxon:683172" FT 5'UTR 1..14 FT CDS 15..2378 FT /codon_start=1 FT /product="putative serine protease" FT /note="ORf1a" FT /db_xref="GOA:G8E836" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:G8E836" FT /protein_id="AER41412.1" FT /translation="MAVPFHIGVADKVLALGSSRSRMWLNELSPAVQNQLRDIFPYEVP FT LNTMIVPFSRYSMGTGVTLAVQGITTPGVYSTYVLHGESWLEVDEERVEPACAFVGALA FT VDRTKLAERNRELQNDNASIIVENQLLRHEVERLRPPATRPVRFSNFALFVLFFFLFFI FT IGTKAENWQDQTKDYVIDFLRDVKYEFISNLDIYYSVLLNLIRWEVISCVIAIVSFFKL FT KRPCVAIIGLFLATISRYNYSALSIVPYLDIYSTAFLYVLMVVYFLVPHVAIVTSVVCA FT MLFTIVSMVCPHHQFIMRVRGDWLVVLVTIATYICDSMGIHTTAIAIMAAVARIYMCMP FT ATTASVVEIKDNTGKVVQKTTLMPNWIGTMYQSARGMFQRVRTGVASFVRVNPNCLCHI FT KVDGCSGTGFRLGNDIVTAAHVIGNATQVEVVYNNYVAQAKVRHIPDKDIAYLVLPEGL FT KSMPVLKLARTPSYEQVTIIALEGNCMLVSTTEGVCHGETISYACATRDGMSGAPVLDV FT NGNVLGVHQTNTGYTGGATVIRATDAAPYVDENAALKKEIEELKRIIKENAMQQRSVQD FT NEVVGIVRAAVQREIGILRDELNSCYQKKKGKNKKGRGARHRMLRRGQKFLTEEEYQEL FT LDKGLTREQLLDAIEEIVRSRIGFPDWSDPEYSSEEDDAAVTYWWEQVKEDNYKDGIPQ FT FDHIIPKYSPSERTFSEQERKDVARELDALQSVVDKVNKDEWDEKKKQITDELNHALFV FT VDKALAQHGYILFEQRMRPKNGKRGPRRRTPNTT" FT CDS <2315..3850 FT /codon_start=1 FT /product="putative RNA dependent RNA polymerase" FT /note="ORF1b; translated by ribosomal frameshift" FT /db_xref="GOA:G8E837" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:G8E837" FT /protein_id="AER41413.1" FT /translation="TKDEAKKRKEGSSQKDPKHYLDSWIGMIMPCARWLVPERYPPYGG FT VPLDRPVFDYKIVNDDLLGLLPPPPNQEFDVFGPTVWDEIAYKKSFEKFEYAEYSDFLN FT VYIECVAFADSRFLEHFNFLSESGFTHILGTDKNMESTPAYPKMRWWLTEEDYLDEHGW FT EYYEKEFDNIASGQNFDVCWYLFLKKEILKQSKIDEGDIRQIVCADPIYSRIGACFEQH FT QNRMMKDYTEKSSGQCGWSPFFGGFEQRMDRLEKKGNKFYVELDWTRFDGTIPPTLLMH FT IKKLRFSLMGEVAHKYERVYKWYCRNLVNRFVILPSGEVTLQNRGNPSGQISTTMDNNM FT INYWLQAFEFKYLGLPEDEWIHFDTIVYGDDRLSTYRTLPADYTSKVVAMYKDVFGMWV FT KPEKVKVSDTLIGLSFCGFTNTKKGPAPSEPYKLMASLLKPVSKLPDIVALHGKLLCFQ FT LLMANNADHPFYGYVEQCLHYTHRALSDANLPRRFTRRQLEYIWRGGPNGDYG" FT CDS 3843..6080 FT /codon_start=1 FT /product="putative capsid protein" FT /note="ORF2" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR022027" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8E838" FT /protein_id="AER41414.1" FT /translation="MANANKGVTINVGNVKRKQRAASNQRTRSAGPGPKRTSKLRKRWH FT FPNRNRRRRTHLNTTGPKPAVSQTITATLGTVGSNLSDVVETECAVFLNPVVAKDSGAS FT ATFGPLQSLGAQYALWRLKWLEVRLQPLVGSSAVSGTVVRVSLNMTTGPTLNSWSGLGA FT RFHRDVRVGSGLVWKITQRHVSGPCETWWKTNTAEDPSLSLGPALEVHTIGKTMSTYKN FT ETFTSGLFLLEITGHWEFANYAASPALATLTQHKDDSETTKTLAISAEGANEPVEMLIP FT VGKWNMKEQYGGNGTLGEAIYQVVDTSVTVVTDLFPPPFSWLGKASWWFIRKVIGKSKT FT YTLTGTNQQITADVYRVYTSASAARDDKPAISSTAHQAKNLTGSVVITQISTDNILNET FT TYTGPRSVLPDQPIGPSSYPMTPDSLVLMAGYFRAPEINENFGRYMPYVFQQRSEVIKF FT VSGTHHTMVVGFWTVDRTMWLDKHFNHFTNEPDGVFGEVGNILINGDNVAKVITMSGSS FT ATSERGATLMLCKTTKPVQTFSVNADVFIPAYRVIDGQGSKDIKIQINSWEDNKQLQFT FT SMPTGTYFMVLTMGGGTFVVKNYVVYNERINNDLQLPAFWGKYLSQAFGLSWSSPTYAC FT VTWEPIYSNEPLPHRTIEWDESSDEDEEPDEFFDEDPIATLHAVDAERKIRRAIFNALM FT EEGVDASRSAEYAARACPTEIQKRRRGLYESLLSDGLSPETSYSEACLLDK" FT 3'UTR 6081..6119 XX SQ Sequence 6119 BP; 1811 A; 1096 C; 1385 G; 1827 T; 0 other; ccaagagtgg taggatggct gtgcctttcc acattggtgt tgcagacaag gttttggcat 60 taggttcctc taggtctcgt atgtggctta atgaactgtc accagctgta cagaatcagc 120 ttcgagacat tttcccttat gaggtacctt taaacacaat gattgtgcct ttttcccgtt 180 attctatggg gactggagtt acgttagctg tccaaggtat caccacacca ggtgtatata 240 gtacttatgt tttacatggt gaatcctggt tggaggttga cgaagaacgt gttgaacctg 300 cctgtgcatt tgttggtgca cttgcagtgg acagaacaaa gctagcagag cgtaaccgtg 360 aattgcagaa tgataatgca tcaatcattg tggaaaacca acttctgcga catgaagtgg 420 agaggctcag accacctgct actcgaccag tgcgttttag taatttcgca ctatttgtcc 480 tcttcttttt tcttttcttt attattggaa ctaaggcaga gaattggcaa gatcaaacta 540 aagattatgt aattgatttt ttaagggatg taaagtatga atttatatct aatttagata 600 tatattactc tgtcttatta aatcttatta ggtgggaagt catttcatgt gtcattgcca 660 tagtttcctt ctttaaattg aaaagaccat gtgttgccat aattggtttg tttttggcaa 720 ctatttcaag gtataattat tcagcattgt ctattgtgcc atacttagac atttacagta 780 ctgctttttt atatgttctt atggttgtct actttttggt gccacatgtt gctatagtta 840 catcagttgt ttgtgctatg ctattcacta ttgttagtat ggtatgccct catcaccagt 900 ttatcatgcg tgtacgtggt gactggttgg ttgtcttagt cacaattgcc acttatatat 960 gtgattccat gggcatacat accacagcca ttgctataat ggctgctgtt gcacgtatat 1020 acatgtgtat gccggctacc actgcatctg ttgttgagat aaaggataat actggtaagg 1080 ttgttcaaaa aactacactt atgccaaact ggataggaac aatgtatcag agtgcacgtg 1140 gcatgttcca gcgtgtacgc actggtgtgg catcattcgt tagggttaac cctaactgtt 1200 tatgccacat caaggttgat ggttgcagtg gtactggttt tagattagga aatgatatag 1260 tgacagcagc acatgtcatt ggcaatgcca cacaggttga agttgtgtat aacaattatg 1320 tggcccaggc taaagttaga catatacctg ataaggacat tgcttattta gtacttccag 1380 agggattaaa gtcaatgcca gtgttgaagt tagcacgtac accatcatat gagcaagtga 1440 caattattgc tctagaaggc aattgcatgc ttgtatcaac taccgaaggt gtgtgccatg 1500 gtgaaacaat atcatatgca tgtgccacac gtgatggtat gagtggagca cctgttttag 1560 atgttaatgg taatgttctt ggtgttcatc aaactaacac tggttatact ggtggggcca 1620 ctgtcatacg tgcgacagat gctgccccat atgttgatga aaatgctgcc ttgaaaaaag 1680 aaattgagga attaaaaaga atcattaaag aaaatgcaat gcaacagaga tctgttcaag 1740 acaatgaggt tgttgggatt gtacgtgctg cagtccaacg cgaaattggt atccttcgcg 1800 atgagctaaa ctcttgttat cagaagaaga aagggaaaaa caaaaaaggt cgtggcgcac 1860 gtcatagaat gttgcgtcgt ggtcaaaaat ttttgactga agaagaatac caggaattat 1920 tggataaagg cctaaccaga gaacaattgc ttgatgctat agaagagata gttaggtcta 1980 ggataggttt tccagactgg tctgatcctg agtattcatc agaggaggat gatgctgccg 2040 tcacatactg gtgggagcaa gtaaaagagg acaactacaa agatggaata cctcaatttg 2100 accatataat tccaaaatat tctccttctg aacgtacctt ttctgagcag gagcgtaagg 2160 acgttgcgag ggaactagat gcattgcaat ctgttgtaga taaagtcaat aaggatgaat 2220 gggatgaaaa gaaaaaacag attactgatg aattgaatca tgcactattt gtggtagata 2280 aagcccttgc ccaacatggg tatatattat ttgaacaaag gatgaggcca aaaaacggaa 2340 agaggggtcc tcgcagaagg accccaaaca ctacttagat tcgtggattg gtatgataat 2400 gccatgcgct cgatggctgg ttccagagcg ctatccaccg tatggtggtg taccgttaga 2460 taggcctgtg tttgattata agattgttaa tgatgatttg cttgggcttt tacctccccc 2520 acctaatcaa gaatttgatg tttttggtcc aactgtttgg gatgaaattg catataagaa 2580 atcctttgaa aagtttgaat atgctgaata tagtgatttt ttaaatgtat atattgaatg 2640 tgtagctttt gcagatagta ggtttttaga acattttaat tttttgtctg aatctggatt 2700 tacacatata cttggaacag ataaaaacat ggaatccaca cctgcatatc caaaaatgag 2760 atggtggtta acagaagagg attatcttga tgagcatggt tgggagtact atgaaaaaga 2820 atttgataat attgcatctg gccagaattt tgatgtctgc tggtatcttt tcttaaagaa 2880 agaaattttg aagcaatcaa agattgatga aggtgatatt agacaaattg tatgtgcaga 2940 tcctatatac tctcgtatag gagcttgctt tgaacagcat caaaatagaa tgatgaaaga 3000 ctacactgaa aaatcctctg gccagtgtgg atggtctccc ttctttggag gttttgaaca 3060 acgtatggat aggcttgaaa agaagggtaa taaattctat gttgagcttg actggacacg 3120 atttgatggt acgataccac ctactctttt gatgcatatc aaaaaattac ggttctcgct 3180 tatgggtgag gttgcccata aatatgaaag agtgtataaa tggtattgta ggaacctagt 3240 taataggttc gttatactcc cttctggtga ggtcactctg cagaaccgtg gtaatccatc 3300 cggtcaaata tcaactacaa tggacaacaa tatgattaac tattggttgc aagcctttga 3360 gtttaaatat ttgggcctac ctgaagatga atggatacat tttgacacta ttgtgtatgg 3420 tgatgatagg ctctctacct atcgcacttt accagctgat tacacctcca aagttgtagc 3480 catgtataaa gatgtctttg gaatgtgggt aaagccagag aaagttaagg tctcagacac 3540 tctcattggt ctatcattct gtggattcac aaatactaag aaaggacctg cacctagtga 3600 accatacaag ttaatggctt cactacttaa acctgtgagc aaattacctg acattgtagc 3660 cctgcatggg aaactcttgt gcttccagtt gttgatggca aataacgctg atcacccatt 3720 ttatgggtat gttgaacaat gcctgcatta tacacaccgt gctcttagtg atgcgaactt 3780 accaaggcgc ttcactcgga gacaattgga gtacatttgg aggggtggac caaatggaga 3840 ttatggctaa tgccaataag ggtgtgacaa ttaatgtagg aaatgtcaaa cgtaagcagc 3900 gtgctgccag taaccagcga actagatctg ctgggccagg tcctaagcga acatccaagc 3960 ttaggaaacg ttggcatttt cctaatcgga atcgccgtcg taggacgcat cttaatacaa 4020 ctgggcctaa gcctgcggtg tcacagacga tcacagcaac acttggcacc gttggatcaa 4080 atttgagtga tgttgttgag acagaatgtg cagtattcct taaccctgtt gtagccaaag 4140 attctggggc tagtgccacc ttcggaccct tacaatcatt aggggcccaa tatgcattat 4200 ggagacttaa atggctggag gttcgactcc agccattagt tggtagttct gctgttagtg 4260 gcactgtagt tagagttagt cttaacatga caactggccc tacattgaat tcatggtcgg 4320 gtcttggcgc gcgatttcat cgagatgtgc gtgtcggatc tggcctagtg tggaaaatta 4380 cacagagaca tgtttcaggc ccttgtgaaa cttggtggaa aacaaataca gcagaagatc 4440 cctcactatc acttggtcct gcattggaag tccacacaat tgggaagaca atgagtactt 4500 acaaaaatga gacttttact agtggacttt ttctcttgga gattacaggc cattgggagt 4560 ttgctaatta tgctgcatca ccagcattgg caactttaac ccaacataaa gatgatagtg 4620 agactactaa gactcttgct ataagtgcgg agggagcaaa tgaaccagtt gaaatgttaa 4680 ttcctgttgg taagtggaac atgaaagagc agtatggtgg aaatggtaca cttggtgaag 4740 caatttacca agttgttgac actagtgtga ctgttgtgac agatcttttt ccaccaccat 4800 tttcatggct tgggaaagca tcatggtggt ttatcaggaa agttataggt aaaagcaaaa 4860 cctatactct aacaggaaca aatcaacaaa taacagctga tgtttacaga gtttacacat 4920 ctgcttccgc agcaagagat gataaaccag caatttctag tactgcccac caggcaaaaa 4980 atctcacagg gtcagttgtg attacccaga tatctactga taatattttg aatgagacaa 5040 catatactgg acccagatct gtgctaccag accaacctat tggaccatca tcatatccaa 5100 tgaccccaga ctcacttgtt ttgatggctg gttatttcag agcccctgaa ataaatgaga 5160 attttggcag atacatgcca tatgttttcc agcagcgaag tgaggtgatt aaatttgtta 5220 gtggtacaca ccatactatg gttgttggct tttggactgt tgatagaacc atgtggttgg 5280 acaaacactt taatcacttt actaatgaac cagatggtgt gtttggtgag gttgggaaca 5340 tcctcatcaa tggtgataat gttgctaaag ttatcactat gagtggttca tctgcaacat 5400 ctgagagggg agccacttta atgctttgta aaaccactaa accagtacaa acctttagtg 5460 tcaatgctga tgtttttata ccagcataca gggtcattga tggtcaaggt agtaaggata 5520 tcaaaatcca gattaattca tgggaagata ataaacagct ccagtttaca tcaatgccta 5580 ctggcactta ttttatggtc ctcactatgg gtggtggcac atttgtagtt aagaactatg 5640 ttgtttataa tgaaaggata aacaatgacc ttcaacttcc agctttttgg gggaaatatc 5700 tatctcaagc ttttggcttg agttggagct caccaacata tgcctgtgtc acatgggaac 5760 ccatttacag taatgaacca ctaccacatc gtaccataga atgggatgag agtagtgatg 5820 aagatgaaga accagatgaa ttttttgatg aggaccccat agctacacta catgcagttg 5880 atgcagagag aaaaatccgg cgtgcaatat tcaatgctct catggaagag ggtgttgatg 5940 ctagccgctc tgcagaatat gcagcaagag catgccctac tgaaattcag aagaggagga 6000 gaggactcta tgaaagcttg ctgtccgacg gcttatcacc tgagacgtcg tacagcgaag 6060 catgtctttt agacaaataa aattttatct ttttttttct aatcaggtag atttagagg 6119 //