ID JF738112; SV 1; linear; genomic RNA; STD; VRL; 2058 BP. XX AC JF738112; XX DT 15-MAY-2011 (Rel. 108, Created) DT 29-JUN-2012 (Rel. 113, Last updated, Version 4) XX DE Switchgrass mosaic virus isolate S2 polyprotein and hypothetical protein DE genes, partial cds; and hypothetical protein gene, complete cds. XX KW . XX OS Switchgrass mosaic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2058 RX PUBMED; 22661377. RA Agindotan B.O., Gray M.E., Hammond R.W., Bradley C.A.; RT "Complete genome sequence of switchgrass mosaic virus, a member of a RT proposed new species in the genus Marafivirus"; RL Arch. Virol. 157(9):1825-1830(2012). XX RN [2] RP 1-2058 RA Agindotan B.O., Gray M.E., Hammond R.W., Bradley C.A.; RT ; RL Submitted (28-MAR-2011) to the INSDC. RL Energy Biosciences Institute, University of Illinois, 1206 West Gregory RL Drive, Urbana, IL 61801, USA XX DR MD5; 0a2bb3fd2c0c7ba92366fdb9d58bf790. XX FH Key Location/Qualifiers FH FT source 1..2058 FT /organism="Switchgrass mosaic virus" FT /host="switchgrass cv. Cave-In-Rock" FT /isolate="S2" FT /mol_type="genomic RNA" FT /country="USA:Champaign, IL" FT /isolation_source="leaves were collected from a single FT plant (S2) at SoyFACE experimental plot, near Champaign" FT /collection_date="15-Jul-2010" FT /identified_by="Bright Agindotan" FT /note="acronym: SwMV" FT /db_xref="taxon:1027869" FT CDS <1..2057 FT /codon_start=3 FT /product="polyprotein" FT /note="ORF1" FT /db_xref="GOA:F6M7T6" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR008043" FT /db_xref="UniProtKB/TrEMBL:F6M7T6" FT /protein_id="AEE61366.1" FT /translation="IADLFHQCPQLQKLYASLVVPAESSFTHLSLHPELYRFRFQGDDL FT VYEPEGNPAANYTQPRRALEWLQTTGFTSGHEFFTVTLLDSFGPVHSLLIQRGRPPVFS FT AEDSVSFRVPDAVALPAPASLHQDLRHRLVPRRVYDALFNYVRAVRTLRVTDPAGFVRT FT QVGKPEYSWVTSSAWDNLQHFALQTAAVRPNTSHPLFQSPLARVAHWLRTHTWALWCLA FT SPAASLTAWFAASRFGRLTVLHTDRLRLFGCDLIGRRFWPILPFQSPEARFLWETHPAC FT KSYTLFAGSAFECRVLGALAHRCSPSPTLSRLFPEAQPARWVVFGSLALAAVPLTALLV FT RWFLGPDSPQALHDQYHATFHPDSWSLDLPRRLRSCVREPFLLTGAAPASIPTSAPENF FT SSDTPRPLTSLQAQAEPSQPSDVQPPRPSAVQPQVAPEPAPAPISPEPAASLPISAEPE FT PVFEPPTSHSPPAQPVADSEPTSQPSSRAPTPVRQAALLGADLRFGDLPPRSSWAQDPE FT LSPLGESTQGTVFAQIPTPREPESALARLEVDPTASGPIMEFRDLQPGLYLGTTGSFLT FT RARNSVSSTIQYPARAACLLVAVRNATSLPTATLWAALAANLPDSILDDGSLVRLGLTT FT DHFAVLARIFSLRCRFVSDHIDVELGVADATSRFTIRHTPGHFELVADD" FT CDS <1..1008 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:F6M7T7" FT /protein_id="AEE61364.1" FT /translation="KSPISSTSAPSSRSCTPPSSSRPSLPSPTFLSIPNFIAFVSRAMT FT SCMSPKETQPPTTPSLVGHSSGSKPRASRLAMSSLPSLCSTPSAPCTRFSSREAAPPSS FT RLRTPSPSGFLTPSPSRPPLPSTKTCDIVSSLGEFTTPCSTTSAPSEPSASPTQLASSG FT PKSASRSTRGSRPPPGTTSSTSPCRPPQSVRTPLTRFSSRPSHVSRTGSGLTRGPSGVW FT PRPPPLSPPGSQPLDSAASPSSTPTACGCSAATSSAVDSGRSCPSRALRPAFSGRPTPR FT ASPTPSSRDLPLNAESLELWRTGALPRQLFPASSQKPSPHAGSFSALSPSRLFH" FT CDS 1072..1959 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:F6M7T8" FT /protein_id="AEE61365.1" FT /translation="MPLSIPTPGLSTFLVGFDLAFESLSFSPGPLRLPFQPQPRRISAL FT TPHALSPRFRPRPSHPNLPTFSRPDLQRFSPKWRPSRLPLPSVPSQQRPCLSQPNRSLF FT SSPQPATARRPSLSPIQSLPLSRRPALPPLFGKQPCSGPTSASATFPPAPHGLKILSSP FT LLASLPKAPFSPKSQLLESPRALSPALRWTPRPAAPSWNLETFSLASTWAPPAPSSLAP FT GILFLPPSSTQREPLAFWSPSAMLPACQRPLSGPRWPPICRTPFLMTVLSSASGSPPTT FT SPSSPASSLFVAAL" XX SQ Sequence 2058 BP; 294 A; 857 C; 465 G; 442 T; 0 other; aaatcgccga tctcttccac cagtgccccc agctccagaa gctgtacgcc tccctcgtcg 60 tcccggccga gtcttccttc acccaccttt ctctccatcc cgaactttat cgctttcgtt 120 tccagggcga tgacctcgtg tatgagcccg aaggaaaccc agccgccaac tacacccagc 180 ctcgtcgggc actcgagtgg ctccaaacca cgggcttcac gtctggccat gagttcttta 240 ccgtcactct gctcgactcc ttcggccccg tgcactcgct tctcatccag agaggccgcc 300 cccccgtctt ctcggctgag gactccgtct ccttccgggt tcctgacgcc gtcgccctcc 360 cggcccccgc ttccctccac caagacctgc gacatcgtct cgtccctcgg cgagtttacg 420 acgccctgtt caactacgtc cgcgccgtca gaaccctccg cgtcaccgac ccagctggct 480 tcgtccggac ccaagtcggc aagccggagt actcgtgggt cacgtcctcc gcctgggaca 540 acctccagca cttcgccttg cagaccgccg cagtccgtcc gaacacctct cacccgcttt 600 tccagtcgcc cctcgcacgt gtcgcgcact ggctcaggac tcacacgtgg gccctctggt 660 gtttggcctc gcccgccgcc tctctcaccg cctggttcgc agcctctaga ttcggccgcc 720 tcaccgtcct ccacaccgac cgcttgcggc tgttcggctg cgacctcatc ggccgtcgat 780 tctggccgat cttgcccttc cagagccctg aggcccgctt tctctgggag acccaccccg 840 cgtgcaagtc ctacaccctc ttcgcgggat ctgcctttga atgccgagtc cttggagctc 900 tggcgcaccg gtgctctccc tcgccaactc tttcccgcct cttcccagaa gcccagcccg 960 cacgctgggt cgttttcggc tctctcgccc tcgcggctgt tccactgaca gccctccttg 1020 tccgctggtt cctgggcccc gattcccccc aagctcttca cgaccagtat catgccactt 1080 tccatcccga ctcctggtct ctcgaccttc ctcgtcggct tcgatcttgc gttcgagagc 1140 ctttccttct caccggggcc gctccggctt ccattccaac ctcagccccg gagaatttca 1200 gctctgacac cccacgccct ctcacctcgc ttcaggccca ggccgagcca tcccaacctt 1260 ccgacgttca gccgcccaga ccttcagcgg ttcagcccca agtggcgccc gagccggctc 1320 ccgctcccat cagtcccgag ccagcagcgt ccttgcctat ctcagccgaa ccggagcctg 1380 ttttcgagcc cccaaccagc cacagcccgc cggcccagcc tgtcgccgat tcagagccta 1440 cctctcagcc gtcgtcccgc gctcccaccc ctgttcggca agcagccttg ctcggggccg 1500 acctccgctt cggcgacctt cccccccgct cctcatgggc tcaagatcct gagctctccc 1560 ctcttggcga gtctacccaa ggcaccgttt tcgcccaaat cccaactcct agagagcccg 1620 agagcgctct cgcccgcctt gaggtggacc ccacggccag cggccccatc atggaattta 1680 gagaccttca gcctggcctc tacctgggca ccaccggctc cttcctcact cgcgcccgga 1740 attctgtttc ttccaccatc cagtacccag cgcgagccgc ttgccttctg gtcgccgtcc 1800 gcaatgctac cagcctgcca acggccactc tctgggccgc gctggccgcc aatctgccgg 1860 actccattct tgatgacggt tctctcgtcc gcctcgggct caccaccgac cacttcgccg 1920 tcctcgcccg catcttctct cttcgttgcc gctttgtgag cgaccacatc gacgtagagc 1980 tcggcgtcgc cgatgccacc tctcgcttca caattcgaca tacaccaggg catttcgagc 2040 tcgtcgccga tgattaaa 2058 //