ID JF729471; SV 1; linear; genomic RNA; STD; VRL; 6506 BP. XX AC JF729471; XX DT 12-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Rattail cactus necrosis associated virus, complete genome. XX KW . XX OS Rattail cactus necrosis-associated virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6506 RX PUBMED; 22006045. RA Kim N.R., Hong J.S., Song Y.S., Chung B.N., Park J.W., Ryu K.H.; RT "The complete genome sequence of a member of a new species of tobamovirus RT (rattail cactus necrosis-associated virus) isolated from Aporcactus RT flagelliformis"; RL Arch. Virol. 157(1):185-187(2012). XX RN [2] RP 1-6506 RA Kim N.R., Song Y.S., Ryu K.H.; RT ; RL Submitted (18-MAR-2011) to the INSDC. RL Division of Environmental and Life Science, Seoul Women's University, 623 RL Hwarangno, Nowon-gu, Seoul 139-774, Korea XX DR MD5; 6b3bbc9c4737a3f89bcf5133a89917f9. DR EuropePMC; PMC5282660; 28137291. XX FH Key Location/Qualifiers FH FT source 1..6506 FT /organism="Rattail cactus necrosis-associated virus" FT /host="Aporocactus flagelliformis" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="01-Aug-2010" FT /db_xref="taxon:1123754" FT 5'UTR 1..66 FT CDS 67..4995 FT /codon_start=1 FT /transl_except=(pos:3505..3507,aa:OTHER) FT /product="185 kDa protein" FT /note="contains methyltransferase (Mtr), helicase (Hel) and FT polymerase domains; produced by readthrough of leaky amber FT stop codon" FT /db_xref="GOA:G9CU43" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9CU43" FT /protein_id="AEV53621.1" FT /translation="MSQLQNYVNKINSGAGVSSQHLLSNLAERVVYDQALESTEAQKRR FT PKYHFSKVVTPEQQNLITGAYPEFSINFTGTSASVHAVAGGLRGLELELLMTQIPFGAA FT CFDIGGNYVRHLLKGRSYVHCCNPVLSVRDGARYESYRDELRKVSAQGAPVAGSWGVPG FT QGASCVRTRSLQPYQVAAFERYSVNPHAVVCDDTFQTCSFPPPAHGCTYAVLLHSLYDI FT PVNELGPALLRKNVHVAYAAFHLSEEMLWKDADGIYPVNDIDAQFERNGDRLVFQFRNE FT MTINYEHSFRNVAAHALKTFYPAGEGKIYFKEFLCRRVGTVFAKFTLVDTAKLHRSVFH FT RSVDGSAFIDAMDEAFEFKRDAALFGAERQLLRDKASLSLWFPHAHNKVEIPVFRASMI FT GKKKLNTSKMLVDKDFFYTVFNHVMGYQEKNLNFQVVNNFVESVVSRVVINGTSVRAEW FT QVSKDLICDISLTLLLLVQLRRLENKEIISKIPLASDGFWSTVTNNMCKFFSNLWPDFL FT SFSVEHGWLQVINSKLVVKAPSEFLTFDDYLVMEYRGSSDGTDVVDVDALIENSDKLYA FT EVGRLAQLFPNLSVDVGKFREFCNNERLSPEHVAKVFEAIQNDQVGLTVTGGGSLEQNL FT VEACKVAPSVDNVVVCSENAPERFLHDGIVSGKLVLPLSGSTASEHNFWFTDDDGNVTD FT LSDFHMLPADVIAKPQKMAIFYKGSTKQQQMLNFLDYMAASLCATVNNLQRALKQWWAG FT DVKNPRDIGVFDCAKGKWITEPGKKNHTWGVAQCHDMSMRIVCVDYIDGKIIPDERWKA FT VAVSSETKVYSYLKMLHNLRGTLRDGTPPEPQCFTTLFDGVPGCGKTSEILRSCDFSKD FT LVLTPTREAAQMIRRRANEADKTRRADVHNVRTIDSFIMNPSRCTFDVVWMDEGLMCHP FT GLIWFCAVMSQCSQLKVFGDTRQIPFLPRVDNFDFPDRLKTLGVDKVEGRSVTHRCPTD FT VTVWLSDVYKRTVTTTSSIDRSVSVRLVPGKTCFDAKSFPLPGKVITFTQAEKFDLQKA FT GYENVSCLDDANKTNNLVNTVHEIQGETYPVVSLVRLNPHPIGIIKKDGPHIVVALSRH FT TQALVYYTVTADAVVNTIDRIKSVNPFLLDMYKHVGGTAXQLTCRPLQSRSNMFIPTAK FT LGDPSDLQCFYDRILPNNSTVLNDYDSFTLRVRDIHLNLDDCRLDLSKDDPAICRRQSG FT YLRPVLRTGTERPRQPGLIENVLALIKRNFNAPHLLGTVDVDAMADTVVDKFFKIFFPD FT GLDDCSNRLMSEESFNDWAAQQLPSTLSKLEVFDHIDLPAVDAYTHIIKRRPKIKLDDS FT ICSSYPALQTIVHHSKEINAIFGPIFKELTRAFLSRVDATKFLFYTRKTPEDIEEFFSD FT LPSVDQTDVYELDISKYDKSQNELHCAVEYAVWKRLGFHGFLAKVWEQGHRRTVLRDFI FT AGIKAVIWFQRKSGDVTTFIGNTIINAVAMSTLLPLEKCVKAAFCGDDSVVYLPKGTVV FT GDIQTKANLQWNFEAKLFKKQYGYFCGRFILPHSTGCVVYPDVLKVIAKLGTKDVTDWT FT HLEELRVSMCDTYKQLGNSAYLDLLKVAMSEVYPSVVDLRFVVCTLWRYITDKVLFRSL FT FLDL" FT CDS 67..3507 FT /codon_start=1 FT /product="128 kDa replication protein" FT /note="contains the methyltransferase (Mtr) and helicase FT (Hel) domains" FT /db_xref="GOA:G9CU44" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9CU44" FT /protein_id="AEV53620.1" FT /translation="MSQLQNYVNKINSGAGVSSQHLLSNLAERVVYDQALESTEAQKRR FT PKYHFSKVVTPEQQNLITGAYPEFSINFTGTSASVHAVAGGLRGLELELLMTQIPFGAA FT CFDIGGNYVRHLLKGRSYVHCCNPVLSVRDGARYESYRDELRKVSAQGAPVAGSWGVPG FT QGASCVRTRSLQPYQVAAFERYSVNPHAVVCDDTFQTCSFPPPAHGCTYAVLLHSLYDI FT PVNELGPALLRKNVHVAYAAFHLSEEMLWKDADGIYPVNDIDAQFERNGDRLVFQFRNE FT MTINYEHSFRNVAAHALKTFYPAGEGKIYFKEFLCRRVGTVFAKFTLVDTAKLHRSVFH FT RSVDGSAFIDAMDEAFEFKRDAALFGAERQLLRDKASLSLWFPHAHNKVEIPVFRASMI FT GKKKLNTSKMLVDKDFFYTVFNHVMGYQEKNLNFQVVNNFVESVVSRVVINGTSVRAEW FT QVSKDLICDISLTLLLLVQLRRLENKEIISKIPLASDGFWSTVTNNMCKFFSNLWPDFL FT SFSVEHGWLQVINSKLVVKAPSEFLTFDDYLVMEYRGSSDGTDVVDVDALIENSDKLYA FT EVGRLAQLFPNLSVDVGKFREFCNNERLSPEHVAKVFEAIQNDQVGLTVTGGGSLEQNL FT VEACKVAPSVDNVVVCSENAPERFLHDGIVSGKLVLPLSGSTASEHNFWFTDDDGNVTD FT LSDFHMLPADVIAKPQKMAIFYKGSTKQQQMLNFLDYMAASLCATVNNLQRALKQWWAG FT DVKNPRDIGVFDCAKGKWITEPGKKNHTWGVAQCHDMSMRIVCVDYIDGKIIPDERWKA FT VAVSSETKVYSYLKMLHNLRGTLRDGTPPEPQCFTTLFDGVPGCGKTSEILRSCDFSKD FT LVLTPTREAAQMIRRRANEADKTRRADVHNVRTIDSFIMNPSRCTFDVVWMDEGLMCHP FT GLIWFCAVMSQCSQLKVFGDTRQIPFLPRVDNFDFPDRLKTLGVDKVEGRSVTHRCPTD FT VTVWLSDVYKRTVTTTSSIDRSVSVRLVPGKTCFDAKSFPLPGKVITFTQAEKFDLQKA FT GYENVSCLDDANKTNNLVNTVHEIQGETYPVVSLVRLNPHPIGIIKKDGPHIVVALSRH FT TQALVYYTVTADAVVNTIDRIKSVNPFLLDMYKHVGGTA" FT gene 5001..6005 FT /gene="MP" FT CDS 5001..6005 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:G9CU45" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G9CU45" FT /protein_id="AEV53622.1" FT /translation="MSSLCVSDPAVLLSPELHLKVPQLKSLVQFWKKPFKTCSISMSDV FT IKVASSNPLSIAVDFSSAMPSGPRNFKYVYILAVVLTGRWHLSESCPGGATFVLYDKRL FT CGRAEGIYGSFFSKVSASKFQVRFSVGHSMTVNDLLRNPLHLCFSLESVPCQEGYEPLS FT VEVSSLQLFTDCILEESLSAKLVKYPALCTDNMSVISNVDDVIFKFNSVLNVDNVPNSV FT KNVVKCNKVFKGRRSRGKWVGSQNEVVVKDGTNVTPHRLIAKDALHQRTTERLRLPDQV FT MGRPPASDTVSERYADSGFPSTAVSHTTSERTVDDGGLRSDQIGPFPYRYVPY" FT gene 5794..6306 FT /gene="CP" FT CDS 5794..6306 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:G9CU46" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:G9CU46" FT /protein_id="AEV53623.1" FT /translation="MPYINVQPKDFVYLTRSWVDPQRLIQFLSDMQTQAFQAQQSRTQL FT LNELSTMVVYGPTKSDRFPIDTYLINITKGGLSAYWFGLTQSADTKDRVFEVSEARAVT FT NAESKLATQRVDDATVAIRNAIKSTLSYLIAGEDIYSRTSFEAALGWIWQENLPPPPQT FT AASDSRT" FT 3'UTR 6307..6506 XX SQ Sequence 6506 BP; 1653 A; 1346 C; 1561 G; 1946 T; 0 other; gtattgtgtc tttgttggtt acattgacaa caatttacat aaacacacac acatttcatt 60 ttcacaatgt cacaattaca aaactacgtt aacaaaatca acagtggtgc tggtgtttca 120 tcccagcacc tgttatccaa ccttgctgag agggtagtct atgatcaggc cctcgaaagc 180 acggaagctc aaaagaggcg tccgaagtac cacttttcga aggtggttac tccggaacag 240 caaaatctga tcaccggtgc gtaccctgaa ttctctatca acttcaccgg gacctctgct 300 tctgtccatg ctgtcgctgg tgggttacga ggtttagaac tggagctttt aatgacgcag 360 attcctttcg gtgctgcatg cttcgatatt ggtggtaatt atgttcggca cttgcttaaa 420 ggccgctcct acgtgcattg ttgcaatccc gtactgagtg tgcgcgacgg agccaggtac 480 gaatcgtacc gcgatgagct acggaaagtc tcggcccaag gtgcaccggt cgctgggtcg 540 tggggtgtgc cagggcaagg tgcctcttgc gtgcgtactc gttctttaca accatatcag 600 gttgccgctt ttgaaaggta ttctgttaat ccacacgctg tcgtatgcga cgacactttc 660 caaacctgca gttttccacc accggcccat gggtgtacat atgctgtttt attacatagt 720 ctgtatgata ttcctgttaa tgagttaggt cccgcgctac ttaggaagaa tgtccacgtg 780 gcctacgcag cttttcatct ctctgaggag atgttgtgga aggacgccga cggtatctac 840 cctgttaatg atatcgacgc gcagttcgaa cgtaatggcg atagattggt ctttcaattc 900 cgcaacgaaa tgaccatcaa ttatgaacac tcgttccgca acgtcgctgc tcatgccctt 960 aagacatttt atccagcagg tgaggggaaa atttacttta aggagttttt gtgtcgtaga 1020 gtcggtacag tcttcgccaa gtttacgctt gtagataccg caaagttaca tcgttctgtt 1080 ttccataggt ctgttgatgg gagtgctttt attgatgcta tggacgaagc ttttgaattc 1140 aaacgggacg cggctctttt tggagcagag cgtcaacttt taagggataa agcttcgctt 1200 agtttgtggt ttccccatgc gcataataag gttgagattc ctgttttccg cgcatcaatg 1260 atcggtaaga agaagctcaa cacgtccaaa atgctggtcg ataaagactt cttctatacc 1320 gtttttaatc acgttatggg ctatcaggag aaaaatctca actttcaagt tgtgaataac 1380 tttgtcgagt cggtcgttag tagggtagtt attaacggta cgtccgtgcg tgcagaatgg 1440 caggttagta aagatcttat ttgtgatatt tcccttactt tgcttttgct tgttcagttg 1500 cgtcgtttgg aaaataaaga aataataagt aaaatacctt tagctagtga cggtttctgg 1560 tctaccgtca ctaataatat gtgtaagttt tttagtaatt tatggccaga ttttctctct 1620 tttagtgtcg agcacggttg gctccaagtt atcaattcta aattggtggt taaagcaccg 1680 tcggagtttt taactttcga cgattatctt gtaatggagt accgtggaag ttcagacggc 1740 actgacgtcg tcgatgtcga cgcattgatt gaaaacagtg ataaacttta cgctgaagtc 1800 ggcaggttgg cccaactctt cccaaatctg tctgttgatg tggggaaatt cagagagttc 1860 tgcaacaatg agaggttgtc gcctgagcac gttgctaaag tttttgaggc gatacaaaat 1920 gatcaagttg ggctgacagt tactggtggc ggtagtttgg aacagaacct ggtagaggcg 1980 tgcaaggttg ctccttcggt ggataacgtt gtggtgtgta gcgagaatgc ccccgaaagg 2040 tttttgcatg atggcattgt tagtggcaaa ctcgttctac cgctcagcgg ttctacagca 2100 agtgagcaca acttctggtt tactgacgat gatggtaacg tcactgatct ttcagatttc 2160 catatgttac cagctgatgt tattgccaag cctcagaaaa tggcaatctt ttataaaggt 2220 tctacaaagc agcagcagat gctgaacttc ttggactata tggctgcgag cttgtgtgct 2280 accgtcaaca acttgcagag agctctgaaa caatggtggg ctggagatgt taagaacccg 2340 cgtgatatcg gggtttttga ttgcgccaaa ggcaagtgga ttactgaacc gggtaaaaag 2400 aatcacacat ggggcgtcgc tcaatgtcat gacatgtcga tgcgcatagt gtgcgtggac 2460 tacattgatg ggaagataat acccgatgaa aggtggaagg ctgtggcggt gtcttcggaa 2520 acaaaagttt attcttatct caagatgctg cacaatttga gaggaacctt gcgtgatggt 2580 acccctcctg agcctcaatg cttcactact ctgttcgatg gtgttccagg gtgtgggaag 2640 acatcggaga ttctccggtc ttgtgatttc tcaaaagatc tggttttgac cccgactagg 2700 gaagccgccc agatgatacg acgacgtgct aatgaagcag acaagacgag aagggcggac 2760 gtgcacaacg ttcggactat cgactcgttc atcatgaacc cgtctcgctg tactttcgac 2820 gtcgtctgga tggatgaagg cttaatgtgt catcccggtc tgatttggtt ttgcgcagtg 2880 atgtcccaat gttcacaact caaagtcttt ggggacacga ggcaaatacc tttcttacct 2940 agggttgaca attttgattt ccctgacagg cttaagactc tcggagtgga caaggttgaa 3000 ggtcgttctg ttactcacag atgccctacg gatgtgactg tttggttatc tgacgtctat 3060 aaacgtacag tcaccaccac ttcgagtatt gataggtcag ttagtgttcg acttgttcca 3120 ggaaagacgt gctttgacgc taaatctttc cctttgcctg gaaaggtcat cactttcaca 3180 caggcggaga agtttgattt gcaaaaggct ggatatgaga acgttagttg tttagacgat 3240 gctaacaaga ctaataatct tgtcaacacc gtccatgaaa ttcagggaga gacgtatcca 3300 gttgtttctc ttgttcggtt gaaccctcac cccataggta ttattaagaa agatggacca 3360 catatcgttg tagctcttag taggcatacg caagcccttg tgtattatac tgtcactgcg 3420 gatgccgttg ttaatactat agatagaatc aagagtgtta acccttttct acttgatatg 3480 tataaacacg taggtggtac cgcatagcaa ttaacgtgtc gtccattgca aagtcgttct 3540 aacatgttca tacctactgc taagttgggt gatccatctg atttacaatg cttttatgac 3600 aggatcttac ccaacaattc gactgtgctc aacgactatg acagtttcac cttgagagtg 3660 agagacattc atctcaactt ggacgattgt agactcgacc tgtcaaagga cgatccagca 3720 atctgtcgga ggcagtcggg ttatctgcgt cccgttctta gaaccggtac ggagagacct 3780 cgacagcccg ggctcattga gaatgtctta gctcttatca agagaaattt caatgcacct 3840 catcttcttg gaactgtaga cgtcgatgca atggccgaca ccgtagtgga taagtttttt 3900 aaaattttct tccctgatgg tcttgatgat tgtagtaata ggttgatgtc tgaagagagt 3960 ttcaatgatt gggccgctca acagttgccc tctactctaa gtaaattaga agttttcgat 4020 catatagatt tgcctgctgt agatgcctat actcatatta ttaaaagaag accaaaaata 4080 aagcttgatg actccatttg ttcctcgtat ccggcgttgc agaccatcgt tcaccattct 4140 aaagaaatca acgccatctt tgggccgatt ttcaaggaac tgactcgagc ctttctttcc 4200 agagtcgatg ctactaagtt cttattctac accagaaaga ctccggagga catcgaagaa 4260 tttttctccg accttccttc ggttgatcag acagatgtct atgagctcga tatcagtaaa 4320 tatgacaaat cccagaatga actgcactgc gccgtcgagt atgcggtatg gaaacgtctt 4380 ggtttccatg ggtttttggc gaaggtctgg gaacagggtc atagaagaac agttctccgc 4440 gactttatcg ctgggattaa ggccgtcatt tggtttcaaa ggaagagtgg agacgtcaca 4500 actttcatag gtaatactat tattaatgcc gtagctatgt ctaccctcct cccgttggaa 4560 aagtgtgtta aagcagcctt ttgtggtgac gatagtgtcg tctacttacc caagggtacg 4620 gtagtcggag atattcaaac aaaggcaaac ctacagtgga actttgaagc aaaacttttt 4680 aaaaaacaat acgggtactt ctgcggcagg ttcatcctac cacatagtac tggctgtgtt 4740 gtttaccccg atgttctcaa ggtcattgcc aaactgggca ccaaggacgt caccgattgg 4800 acgcatctgg aagagttgag ggtcagtatg tgtgatacct ataagcaatt aggtaatagt 4860 gcttatttag atttgcttaa ggtagccatg tctgaggttt atccctcagt cgtggacttg 4920 cgttttgtag tgtgtacact gtggaggtat ataactgata aagtgttatt taggagttta 4980 tttttggatt tatagtcgcc atgtctagtt tgtgtgtttc tgacccggca gtgctgctta 5040 gtcccgaact acacttgaaa gtgcctcaac tcaaatctct ggttcaattc tggaagaaac 5100 ctttcaaaac gtgtagtatt tcaatgtcgg atgtcataaa ggttgcaagt agcaacccgt 5160 tatctattgc tgtagatttt tctagtgcca tgccatcggg tccgcgtaac ttcaagtatg 5220 tttatatttt ggctgtagtt ctgactggga gatggcattt gtctgagtcc tgccctggcg 5280 gtgccacgtt tgttttgtat gataagcgtc tttgtggtag agccgagggt atttatggta 5340 gctttttctc taaagtgagt gcttcgaagt ttcaagttag gttttccgtt ggtcattcta 5400 tgactgttaa tgacttgctt aggaatcctt tgcatttgtg tttttcttta gagtcggtac 5460 cgtgtcaaga ggggtacgaa ccgctctcgg tggaggtctc tagtttacaa ctctttacag 5520 actgtatact agaagagtct ctttccgcga agttggttaa atatcccgct ctatgtacag 5580 ataatatgtc tgttattagt aatgttgatg atgtcatttt caaattcaat agtgttttga 5640 acgtcgacaa cgttcctaac agtgttaaga atgttgtcaa gtgtaataaa gtctttaagg 5700 gtcgtagaag tagaggtaaa tgggttgggt cgcaaaatga agtggtcgtt aaagacggta 5760 cgaatgtaac gcctcatcgt ttaattgcga aagatgcctt acatcaacgt acaaccgaaa 5820 gacttcgttt acctgaccag gtcatgggta gacccccagc gtctgataca gtttctgagc 5880 gatatgcaga ctcaggcttt ccaagcacag cagtctcgca cacaacttct gaacgaactg 5940 tcgacgatgg tggtctacgg tccgaccaaa tcggaccgtt tccctataga tacgtacctt 6000 attaatatta ctaaaggtgg tctaagtgct tactggttcg gtttgactca gtctgcggat 6060 acaaaagatc gcgttttcga agttagtgaa gcacgcgctg taactaacgc tgagtctaag 6120 ctggcaacgc aacgtgttga cgatgccacc gtagctataa gaaatgctat taagagtact 6180 cttagttatt taatagctgg agaagatatt tatagcagga cgtcatttga agcggcgctt 6240 ggctggatat ggcaggaaaa ccttccacct ccacctcaaa ccgctgcaag tgacagtcgt 6300 acttaaggat ctttctcaaa gtgtttttcc attcgctctg ttaaatggaa cgtgggtgta 6360 acgatataca ccacagttta ccagtcctgt ataatcgaac tggttgtcgt ctggaactgc 6420 tacgttaacg ccttgtgtag gtattgcgtt ggcgacgtaa aacagcaggg tggttcgaat 6480 ccacccttac cccgggtagg ggccca 6506 //