ID JF727261; SV 2; linear; genomic RNA; STD; VRL; 6423 BP. XX AC JF727261; XX DT 10-MAY-2011 (Rel. 108, Created) DT 29-JUN-2012 (Rel. 113, Last updated, Version 5) XX DE Switchgrass mosaic virus isolate S1, complete genome. XX KW . XX OS Switchgrass mosaic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-6423 RX PUBMED; 22661377. RA Agindotan B.O., Gray M.E., Hammond R.W., Bradley C.A.; RT "Complete genome sequence of switchgrass mosaic virus, a member of a RT proposed new species in the genus Marafivirus"; RL Arch. Virol. 157(9):1825-1830(2012). XX RN [2] RP 1-6423 RA Agindotan B.O., Gray M.E., Hammond R.W., Bradley C.A.; RT ; RL Submitted (18-MAR-2011) to the INSDC. RL Energy Biosciences Institute, University of Illinois, 1206 West Gregory RL Drive, Urbana, IL 61801, USA XX DR MD5; 8f9d98759e671deb401b316a9d44c26f. XX CC On May 10, 2011 this sequence version replaced gi:332183051. XX FH Key Location/Qualifiers FH FT source 1..6423 FT /organism="Switchgrass mosaic virus" FT /host="Panicum virgatum cv. Cave-In-Rock" FT /isolate="S1" FT /mol_type="genomic RNA" FT /country="USA:Champaign, IL" FT /collection_date="15-Jul-2010" FT /identified_by="Bright Agindotan" FT /note="acronym: SwMV" FT /db_xref="taxon:1027869" FT 5'UTR 1..108 FT CDS 109..6294 FT /codon_start=1 FT /product="polyprotein" FT /note="Orf1; contains methyl transferase (MTR), helicese FT (HEL), petidase (PRO), and capsid protein domains" FT /db_xref="GOA:F5CJX7" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F5CJX7" FT /protein_id="AEE25899.3" FT /translation="MSVFLRGGHLLSGVESLTPTTHRDTITAPIVESLATPLRRSLERY FT PWSIPKEFHPFLHTCGIDISGFGHAAHPHPVHKTIETHLLMDVWPNYARGPSDVMFIKP FT EKFAKLQTRQANFSHLINYRLVPKDTTRYPTTSTDLPDCETVFMHDALMYYSPGQIADL FT FHQCPQLQKLYASLVVPAESSFTHLSLHPELYRFRFQGDDLVYEPEGNPAANYTQPRRA FT LEWLQTTGFTSGHEFFTVTLLDSFGPVHSLLIQRGRPPVFSAEDSVSFRVPDAIALPAP FT ASLHQDLRHRLVPRRVYDALFNYVRAVRTLRVTDPADFVRTQVSKPEYSWVTSSAWDNL FT QHFALQTAAVRPNTSHPLFQSPLARVAHWLRTHTWALWCLASPAASLTAWLAASRFGRL FT TVLHTDRLRLFGCDLIGRRFWPILPFQSPEARFLWETHSACKPYTLFAGSAFECRVLGA FT LAHRCSPSPTLSRLFPEAQPARWVVFGSLALAAVPLTALLVRWFLGPDSPQALHDQYHA FT TFHPDSWSLDLPRRLRSCVREPFLLTGAAPASTPTSAPENFSPDTPRPLTSLRAQAEPS FT QPSDVQPPKPSAVQPQVAPEPAPAPISPEPAASLPISAEPESVFEPPTSHSPPAQPVAD FT SEPTSQPSSRAPTPVRQAALLGADLRFGDLPPRSSWAQDPELSPLGESTQGTVFAQIPT FT PREPESALARLEVDPTASGPIMEFRDLQPGLYLGTTGSFLTRARNSVSSTIQYPARAAC FT LLVAVRNATSLPTATLWAALAANLPDSILDDGSLVRLGLTTDHFAVLARIFSLRCRFVS FT DHIDVELGVADATSRFTIRHTPGHFELVADDYSLPALVGASTIPGADLAESCKRFVASD FT RTVLPFRDVHIHRTSVKRAKNLISNMKNGFDGVMAQANPLDPKSARERFLMLDSCLDIA FT APRVVRLIHIAGFAGCGKSWPVAQLLKTPAFRTFKLAVPTTELRDEWKGLMEPRDQDKW FT RFGTWESSLLKSARTLVIDEVYKMPRGYLDLAIHADASIQFVILLGDPIQGEYHSTHPS FT SSNARLSPEHVYLRPYIDFYCFWSRRIPQYVATILGVPSTSKVSGYARHSSQFPLNGKI FT LISAMTSAKSLVDCGYQAITIASSQGSTVNGPVHIHLDNHARRLSHQHSLVAITRSRAG FT LVFTGDPSVADGTSSSNLLFSAVLMNHPISVRSLFSALLPRCPFVESPPTSRSVLLRGA FT GYGSAPPLRPRESPPMRPDFQGDVIADLSAPFLGDGSSNAPQVSTHFLPESRRPLHFDV FT PSARHQVADHPLKPDHSACAIEPVYPGESFEQLAALFLPPTDAESKEIRFRGELSNQFP FT HLDKPFEISAQPSSLLAPVHNSKHDPTLLPASIAKRLRFRHNDSAYTISARDEILGGLL FT YEAWCRAYRRSPLDIEPFDPVLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAV FT RIFAKTQHKVNEGSLFGSWKACQTLALMHDAVVLLLGPVKKYQRVFDQRDRPSHLYVHA FT GHTPFEMAEWCQQHLTPAIKLANDYTAFDQSQHGEAVVFERFKMSRLSIPQELIDLHVY FT LKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSLLDSEP FT PVRDQWAAVEPMLALTFKKERGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDESIDD FT KLIAYLTEFTVGHSLGDAFWTILPVETVPYQSACFDFFCRRAPAQAKVMLRLGEAPESL FT LSMAFQGLKWASHSVYALMNSSHRRQLLHSSRRPRSLPEDPEVSQLQGELLHQFQSLHL FT PLRGASMPNPLAAPFRLLPLGSASLGPSYSVAPLQPPPASESPDSMAENATQVGPAPAR FT DDRLDRQPAIPAPPRVVETAPTHYIDLPFQWKITDFTGAAAYHDTGDLSASPVLTTLCA FT PYRHAELISVELSLAPCPPSFTKPIMFTVVWTPATLSPTDGKETDFYGGRQISIGGPVM FT LSSTTAIPADLTRMNPVIKSSVAYRDTPRWTMSVPAVSGGDTKVNLATGFIRGVIRVSA FT PSGAAIKAAS" FT CDS 314..1591 FT /codon_start=1 FT /product="movement protein" FT /note="Orf2" FT /db_xref="UniProtKB/TrEMBL:F5CJX8" FT /protein_id="AEE25897.3" FT /translation="MPPTLTRSTRPSKPISSWTSGPTMPEVPPMSCSSSQRSSPSSRRG FT RPTSPTSSTTDSSRRTRPGIPPHPPTSPTVRPFSCTTLSCTTRPDKSPISSTSAPSSRS FT CTPPSSSRPSLPSPTFLSIPNFIAFVSRAMTSCMSPKETQPPTTPSLVGHLSGSKPRAS FT RLAMSSLLSLCSTPSAPCTRSSSREAAPPSSRLRTPSPSGFLTPSLSRPPLPSTKTCDI FT VSSLGGFTTPCSTTSAPSEPSASPTQLTSSGPKSASQSTRGSRPPPGTTSSTSPCRPQQ FT SVRTPLTRFSSRPSHVSRTGSGLTRGPSGVWPRPPPLSPPGSQPLDSAASPSSTPTACG FT CSAAISSAVDSGRSCPSRVLRPASSGRPTPRASPTLSLRDLPLSAESLELWRTGALPRQ FT LFPASSQKPSPHAGSFSALSPSRLFH" FT CDS 1655..2542 FT /codon_start=1 FT /product="unknown" FT /note="Orf3" FT /db_xref="UniProtKB/TrEMBL:F5CJX9" FT /protein_id="AEE25898.2" FT /translation="MPLSIPTPGLSTFLVGFDLAFESLSFSPGPLRLPLQPQPRRISAL FT TPHALSPRFGPRPSRPNLPTFSRPNLQRFSPKWRPSRLLPPSVPSQQRPCPSQPNRSLF FT SSPQPATARRPSLSPIQSLPLSRRPALPPLFGKQPCSGPTSASATFPPAPHGLKILSSP FT LLASLPKAPFSPKSQLLESPRALSPALRWTPRPAAPSWNLETFSLASTWAPLAPSSLAP FT GILFLPPSSTQREPLAFWSPSAMLPACQRPLSGPRWPPICRTPFSMTVLSSASGSPPTT FT SPSSPASSLFVAAL" FT 3'UTR 6294..6423 XX SQ Sequence 6423 BP; 1112 A; 2510 C; 1442 G; 1359 T; 0 other; ggtcctctgc ccactcctgc gcccgatctc cgcaggtttt actccgcacc ttttcgtccg 60 gagacagatc attccctcac gctcacgaca cgcacccccc ttcaaaggat gtccgtgttt 120 cttcgtggtg gccatctact cagcggagtg gagtctctta cgccaaccac ccaccgcgat 180 accatcacag ctcccatcgt cgagtcactc gccacccctc tccgacgatc tcttgagcga 240 tacccttggt ccatccccaa ggagttccac cccttccttc acacctgcgg cattgacatc 300 tctggctttg gccatgccgc ccaccctcac ccggtccaca agaccatcga aacccatctc 360 ctcatggacg tctggcccaa ctatgccaga ggtccctccg atgtcatgtt catcaagcca 420 gagaagttcg ccaagctcca gacgaggcag gccaacttct cccacctcat caactaccga 480 ctcgtcccga aggacacgac ccggtatccc accacatcca ccgacctccc cgactgtgag 540 accgttttca tgcacgacgc tctcatgtac tactcgcccg gacaaatcgc cgatctcttc 600 caccagtgcc cccagctcca gaagctgtac gcctccctcg tcgtcccggc cgagtcttcc 660 ttcacccacc tttctctcca tcccgaactt tatcgctttc gtttccaggg cgatgacctc 720 gtgtatgagc ccgaaggaaa cccagccgcc aactacaccc agcctcgtcg ggcacttgag 780 tggctccaaa ccacgggctt cacgtctggc catgagttct ttactgtcac tctgctcgac 840 tccttcggcc ccgtgcactc gctcctcatc cagagaggcc gcccccccgt cttctcggct 900 gaggactccg tctccttccg ggttcctgac gccatcgctc tcccggcccc cgcttccctc 960 caccaagacc tgcgacatcg tctcgtccct cggcgggttt acgacgccct gttcaactac 1020 gtccgcgccg tcagaaccct ccgcgtcacc gacccagctg acttcgtccg gacccaagtc 1080 agcaagccag agtactcgtg ggtcacgtcc tccgcctggg acaacctcca gcacttcgcc 1140 ttgcagaccg cagcagtccg tccgaacacc tctcacccgc ttttccagtc gcccctcgca 1200 cgtgtcgcgc actggctcag gactcacacg tgggccctct ggtgtttggc ctcgcccgcc 1260 gcctctctca ccgcctggct cgcagcctct agattcggcc gcctcaccgt cctccacacc 1320 gaccgcttgc ggctgttcgg ctgcgatctc atcggccgtc gattctggcc gatcttgccc 1380 ttccagagtc ctgaggcccg cttcctctgg gagacccact ccgcgtgcaa gccctacact 1440 ctctttgcgg gatctgcctt tgagtgccga gtccttggag ctctggcgca ccggtgctct 1500 ccctcgccaa ctctttcccg cctcttccca gaagcccagc ccgcacgctg ggtcgttttc 1560 ggctctctcg ccctcgcggc tgttccactg acagccctcc ttgtccgctg gttcctgggc 1620 cccgattccc cccaagctct tcacgaccag tatcatgcca ctttccatcc cgactcctgg 1680 tctctcgacc ttcctcgtcg gcttcgatct tgcgttcgag agcctttcct tctcaccggg 1740 gccgctccgg cttccactcc aacctcagcc ccggagaatt tcagccctga caccccacgc 1800 cctctcacct cgcttcgggc ccaggccgag ccgtcccaac cttccgacgt tcagccgccc 1860 aaaccttcag cggttcagcc ccaagtggcg cccgagccgg ctcctgcccc catcagtccc 1920 gagccagcag cgtccctgcc catctcagcc gaaccggagt ctgttttcga gcccccaacc 1980 agccacagcc cgccggccca gcctgtcgcc gattcagagc ctacctctca gccgtcgtcc 2040 cgcgctccca cccctgttcg gcaagcagcc ttgctcgggg ccgacctccg cttcggcgac 2100 cttccccccc gctcctcatg ggctcaagat cctgagctct cccctcttgg cgagtctacc 2160 caaggcaccg ttttcgccca aatcccaact cctagagagc ccgagagcgc tctcgcccgc 2220 cttgaggtgg accccacggc cagcggcccc atcatggaat ttagagacct tcagcctggc 2280 ctctacctgg gcaccactgg ctccttcctc actcgcgccc ggaattctgt ttcttccacc 2340 atccagtacc cagcgcgagc cgcttgcctt ctggtcgccg tccgcaatgc taccagcctg 2400 ccaacggcca ctctctgggc cgcgctggcc gccaatctgc cggactccat tctcgatgac 2460 ggttctctcg tccgcctcgg gctcaccacc gaccacttcg ccgtcctcgc ccgcatcttc 2520 tctcttcgtt gccgctttgt gagcgaccac atcgacgtag agctcggcgt cgccgacgcc 2580 acctctcgct tcacaattcg acatacacca gggcatttcg agctcgtcgc cgatgattac 2640 agtcttccgg ctctcgtcgg cgcctccacc atccctggcg ctgatctcgc cgagtcctgc 2700 aagcgcttcg tcgcctccga tcgcaccgtc ctcccttttc gcgacgtcca cattcatcgc 2760 accagcgtca agcgagccaa aaacctcatc tccaacatga agaacggctt tgatggggtc 2820 atggctcagg cgaacccact tgaccccaag agcgcccgcg aacgcttcct catgctcgat 2880 tcttgtctcg acatcgctgc gccccgcgtc gtcaggctga tccacatcgc aggcttcgcc 2940 ggttgcggga aatcctggcc cgtcgcccaa ctcctgaaga cccctgcctt ccgcacgttc 3000 aaactcgccg tccccacgac cgagctgaga gacgagtgga aaggcctcat ggagcctcgg 3060 gaccaggaca agtggcgttt cggcacctgg gagtcctcat tgctcaagtc agcgcgcacc 3120 ctcgttattg acgaggttta caagatgccg cgtggctacc tcgacctcgc cattcacgcc 3180 gacgcctcta ttcagttcgt gattctcctc ggcgacccca tccaaggcga gtatcactcg 3240 actcacccca gctcgtccaa cgctcggctt tctccagagc acgtttatct ccgcccttac 3300 atcgacttct actgcttctg gagccgtcgc atcccacagt acgtcgccac cattctcggg 3360 gtcccttcca cttcaaaggt ctccggctac gctaggcatt ccagccagtt cccgctcaac 3420 ggcaagatcc tcatctcagc catgacctca gcgaaaagcc ttgtcgattg cgggtaccag 3480 gccatcacca tcgccagcag tcaaggatcc accgtcaacg gccccgttca tatccacctt 3540 gataatcatg cccgccgtct ctctcaccag cattctctcg tcgccatcac ccgatcccga 3600 gccggcctag tcttcaccgg cgatccctcc gtggccgacg gcacctcatc ctccaacctg 3660 ctcttctccg cagtcctcat gaatcacccc atctcggttc gatccctctt cagtgcgctg 3720 ttgcctcgct gccctttcgt ggagtcccca cccacttctc ggtccgtgct cctccgtggc 3780 gccggctacg gctcagcccc tcctctccgc ccaagagaga gcccgccaat gcgtcctgac 3840 tttcagggcg acgtcatagc cgatctttcc gcccccttcc tcggtgatgg ctcatccaac 3900 gcaccgcaag tcagtaccca cttcctgccg gagtcgcgtc gcccgctcca ctttgacgtc 3960 ccttccgccc gacatcaagt ggctgaccat cctctcaagc ccgaccactc ggcctgcgcg 4020 atagagccag tctaccccgg cgaaagcttc gagcaactgg ccgctctctt cttgcctcct 4080 acggacgctg aaagcaagga aatccgattt cgcggcgagc tctcaaacca atttccccac 4140 ctcgacaagc cgttcgaaat cagcgcccag ccatcgagtc ttctcgcgcc agtgcacaac 4200 tccaagcatg accccacgct tctgcccgcg tccatagcca agagactgcg gttccgacac 4260 aatgactctg cctacaccat ctcggctcgc gacgaaattt tggggggtct tctatatgag 4320 gcctggtgcc gcgcctaccg tcgctccccc ctggatatcg aaccgtttga ccccgtgctt 4380 tacgccgagt gcatcaacct caacgagttc gcccagctct cctcaaaaac tcaggccacc 4440 atcatggcca atgcaaacag gagtgacccc gactggcgct ggtcagccgt tcgcatcttt 4500 gccaagactc agcacaaagt caacgagggc tctctctttg gctcctggaa ggcctgccag 4560 actcttgctc taatgcacga cgccgtcgtg ctcctccttg ggcctgtaaa gaagtatcag 4620 cgcgttttcg accagcgcga tcgtccctct cacttgtacg tccacgccgg tcacaccccg 4680 tttgagatgg ccgagtggtg ccagcagcac ctgacccccg ccatcaagct cgccaacgac 4740 tacacggcct ttgaccagtc tcagcacggc gaagctgttg tcttcgagcg tttcaagatg 4800 tcccggctgt cgatccctca agagctcata gatctgcacg tctacctgaa gactaacgtc 4860 tcgacgcagt tcggcccatt aacctgcatg cggctcaccg gtgaacctgg cacatacgac 4920 gacaacactg actacaacat tgctgtgctg catctcgagt acgccgttgg ttccacccct 4980 ctcatggtct ccggcgatga ctcgcttctc gatagcgagc ctcccgttcg agaccagtgg 5040 gccgccgttg agccgatgct cgctcttacc ttcaagaaag aacgcggtcg ctacgccacc 5100 ttttgcggct actatgtcgg cttcacaggc gctgtgcggt ctccacccgc cctctttgcc 5160 aagctcatga tcgccgtgga cgacgagtcg atcgacgaca agctcatcgc ctacctcacc 5220 gagttcacgg tgggccattc tcttggcgac gccttctgga ccatcctccc cgtcgagacc 5280 gtcccttacc agagcgcgtg tttcgacttc ttctgccgac gcgccccagc gcaagccaaa 5340 gtcatgctaa ggcttggtga ggctcccgag tctctcctgt ccatggcttt ccaaggcttg 5400 aaatgggcgt cccactccgt ctacgccctc atgaactcga gtcaccgtcg ccagctcctc 5460 cacagctctc gccgtcctcg ctctctcccc gaagaccctg aggtctctca gcttcagggt 5520 gaattgcttc accagttcca atctctccac ctgccgctcc gaggagcttc catgccaaat 5580 ccgctcgctg cgccctttcg cctcctgcct ctcggttcag cctccctcgg cccatcttac 5640 tccgtggcgc ctctccagcc tccgcctgcc tctgagtccc ccgactcaat ggccgaaaat 5700 gccacgcaag tcgggcccgc tccagctcgc gatgaccgcc ttgatcgcca gcctgctatt 5760 cctgctcctc ctcgtgtggt tgaaaccgcg ccgacgcact acatcgacct cccgttccag 5820 tggaaaatca ccgacttcac cggagccgca gcctaccacg acacaggcga cctctcagcc 5880 tccccggtac tgacgactct gtgcgcccca taccgacacg ccgagctcat ctcagttgag 5940 ctctcgctcg ccccctgccc gccgtccttc accaagccca tcatgttcac cgtcgtctgg 6000 acgccggcca ctctctcacc caccgatggg aaagagacgg acttctacgg aggccgtcaa 6060 atttccatcg gcggtccggt catgctctct agcaccaccg ccatcccagc cgacctcact 6120 cgtatgaacc ccgtcatcaa gtcgagcgtc gcctaccgtg acacccctag gtggaccatg 6180 tccgtccccg ccgtctctgg cggtgacacc aaggtcaacc tcgccaccgg cttcatccgg 6240 ggagtcatcc gcgtctccgc tccatccgga gccgccatca aggccgcctc ttaggcgcct 6300 cccgcgagaa ggaaaactcg cccggctata ggccggtaag atgttaaacc tccagccctc 6360 cgtgatcgca aaatcttagg taacaggtcg gccacaagac ctgtgggcaa aaaaaaaaaa 6420 aaa 6423 //