Dbfetch
ID JF713435; SV 1; linear; genomic RNA; STD; VRL; 4197 BP. XX AC JF713435; XX DT 21-AUG-2011 (Rel. 109, Created) DT 06-OCT-2011 (Rel. 110, Last updated, Version 2) XX DE Pea enation mosaic virus-2 strain WA RNA-dependent RNA-polymerase, 33 kDa DE protein, long-distance movement protein, and cell-to-cell movement protein DE genes, complete cds. XX KW . XX OS Pea enation mosaic virus 2 OC Viruses; Riboviria; Tombusviridae; Calvusvirinae; Umbravirus. XX RN [1] RP 1-4197 RX DOI; 10.1007/s00705-011-1074-0. RX PUBMED; 21837418. RA Vemulapati B., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.; RT "Genomic characterization of pea enation mosaic virus-2 from the Pacific RT Northwestern USA"; RL Arch. Virol. 156(10):1897-1900(2011). XX RN [2] RP 1-4197 RA Vemulapati B.M., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.; RT ; RL Submitted (21-MAR-2011) to the INSDC. RL Plant Pathology, Washington State University, 345, Johnson Hall, Pullman, RL WA 99164-6430, USA XX DR MD5; 2522963bb1f4b27f44bccba71af89d8c. XX FH Key Location/Qualifiers FH FT source 1..4197 FT /organism="Pea enation mosaic virus 2" FT /host="pea" FT /strain="WA" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="2010" FT /db_xref="taxon:193120" FT CDS join(2..797,797..2541) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA-polymerase" FT /note="RdRp; 65 kDa protein" FT /db_xref="GOA:G1C108" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:G1C108" FT /protein_id="AEM45990.1" FT /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR FT RDADSIANEWYEGSMECNLLIPRAKPEDVLGPSVAPEPVALVEDATPSHAPGVDVPAEE FT SSKLAELSPADLSKFDSLHRRMLAEANPCREIVLWVPPGPPAERDVLPRARGVIMIPEV FT PASACTLSVKVMEAVRLAQEVLASLAKRALERRSTPTFTAQAQPEATLSGCDYPYQETG FT AAAAWITPGCIAMELRAKFGVCKRTPANLEMGSRVARELLRDNLCHLQGDHVVHQCHCC FT GPVVDPNRRRPGLWAASGGFLVGAVLPRLGEDTSVRFDNLHPSIEVIKAAKPRPTQRMS FT FQIDVVRPLGDFGVHNNSLVNLARGINERVFYTDNARTEPLQPKVPFPSSRELKTFRVT FT PWTMDRVVESYTGSQRTRYANARDSILSNPLSPKDARVKTFVKAEKINFTAKPDPAPRV FT IQPRDPRFNIVLAKYIKPLEPMLYKALGKLYKYPAVAKGFNAVETGEIIAGKWRCFKDP FT VVVGLDASRFDQHVSVEALQFTHAVYRGFIKSREFNNLLQMMYTNRGLGSAKDGFVRYK FT VKGRRMSGDMDTSLGNCVLMVLLTRNLCKILGIPHELFNNGDDCIVFFDRCHLEKFNNA FT VKTYFADLGFKMKVEPPVDVLEKIEFCQTQPIYDGEKWRTVRCISSIGKDCSSVISWDQ FT LEGWWNAIAQSGLAVCGGMPIYTSFYRWLARAGKSGTKCQSHPLWKNEGLNWYRMRIEL FT SHEVNVTPQARRACDAGFGISPPMQVAIEALYDKLPPPSPHHGPPVKAVTQRVFTNYFT FT PESACVSMSTNEDNKSDFAVYGPVPTVMSLCAQC" FT CDS 2..910 FT /codon_start=1 FT /product="33 kDa protein" FT /db_xref="UniProtKB/TrEMBL:G1C109" FT /protein_id="AEM45989.1" FT /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR FT RDADSIANEWYEGSMECNLLIPRAKPEDVLGPSVAPEPVALVEDATPSHAPGVDVPAEE FT SSKLAELSPADLSKFDSLHRRMLAEANPCREIVLWVPPGPPAERDVLPRARGVIMIPEV FT PASACTLSVKVMEAVRLAQEVLASLAKRALERRSTPTFTAQAQPEATLSGCDYPYQETG FT AAAAWITPGCIAMELRAKFGVCKRTPANLEMGSRVARELLRDNCVTCRETTWYTSAIAV FT DLWLTPTVVDLACGRRAADFW" FT CDS 2762..3454 FT /codon_start=1 FT /product="long-distance movement protein" FT /note="26 kDa protein" FT /db_xref="InterPro:IPR006902" FT /db_xref="UniProtKB/TrEMBL:G1C110" FT /protein_id="AEM45991.1" FT /translation="MTIIINVNNDERKQPEGATGSSVRRGDNKRTRGNKPRSHHPGSRE FT RKGYNHSSPTPKNSKQGQLRTEAVQEHPKHGGTAFRRESGGSVHPSRPRRRARRGGDMA FT PRQHPPPPRERRTKTKTQAERRAQALSVLPTLLDSIGGLDLGPAEVFLHCHRAVRRQLR FT TGVQPIQPVPHVESTHRSSDPQLLEPPTTCSANLQNDGAGRVIGGGIPTAIPEGSDVEQ FT VCHASHYE" FT CDS 2778..3530 FT /codon_start=1 FT /product="cell-to-cell movement protein" FT /note="27 kDa protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:G1C111" FT /protein_id="AEM45992.1" FT /translation="MSITTSASNQKELLAALYGEVTIKELEETNLGVITPVRANEKVTI FT TPLLPPKTQSRVSSVLKRFRSTRNTGGLLSVEKVVVVFTPHVPDDVLGEVEIWLHDSIL FT PHLGSVGPRLKLKLSEGPKLLAFYPPYSIALGDSTSGQPRSFSIVTELFEGNFAPGCSP FT FSLFLMWSPRIEAVTHNYLSRPPRALPICRTMVRDALSEVAFQQQYLKGAMSNRYAMPL FT TTSDGQHRAMKGAPSALPPTGVCTQASK" XX SQ Sequence 4197 BP; 937 A; 1159 C; 1199 G; 902 T; 0 other; tatgaactgt gtcgctagga ttaagcggtg gttcacacct gacttcaccc ctggcgaggg 60 tgtgaagtcc agagcacagc tggaaagaga gctggatccc acctgggcgc tcctcgtgtg 120 tcaagagcga gcgcgtcggg atgctgacag tatcgccaat gagtggtacg agggcagcat 180 ggagtgtaac ctcctcatcc cacgggctaa gcccgaggac gttttgggcc cctccgtcgc 240 ccctgagcct gtggctctag tggaggatgc gaccccttcc cacgcgccgg gcgtggatgt 300 ccctgccgag gagtctagta agttagcgga gcttagtcct gctgacctct ccaagttcga 360 ctccctccat cgtcgcatgt tggctgaagc caacccttgc agggaaatag ttctgtgggt 420 gcctcctggc ccaccagcag agcgcgacgt cctgcccagg gcacgtgggg tgataatgat 480 ccccgaagtc cctgcctccg catgcacctt gtccgtgaag gttatggagg ctgtgcggtt 540 ggcacaggaa gtcttggcat cccttgccaa gagggccttg gagagaaggt ccacaccaac 600 ctttaccgcc caggctcagc cagaagctac cctgtcgggg tgcgactacc cgtatcagga 660 gactggtgca gcagccgcgt ggattacgcc tggctgcatt gccatggagc tcagagccaa 720 gtttggcgtc tgcaaacgca cccccgctaa cttagagatg gggagtcgtg tcgcccgcga 780 gctcctgcgg gataactgtg tcacctgcag ggagaccacg tggtacacca gtgccattgc 840 tgtggacctg tggttgaccc caaccgtcgt cgacctggcc tgtgggcggc gagcggcgga 900 tttttggtag gggctgtgct gcctcggctg ggggaagaca ccagtgtgcg gtttgacaac 960 ctgcacccca gcatcgaggt aatcaaggcg gctaagcccc gcccaaccca gaggatgtcg 1020 ttccaaatcg acgttgtgcg tcctcttgga gattttggtg tgcacaacaa ctcccttgtc 1080 aacctagcca ggggaattaa tgaaagggtg ttctacacgg acaatgctag gacagaaccc 1140 ctccagccta aggttccctt cccttcatca cgggagctaa aaaccttcag agtcaccccc 1200 tggaccatgg atagggttgt ggagagttac acagggtccc agcgcactcg ctatgctaat 1260 gcgcgggaca gcatattatc caaccctctg agtcccaaag atgcgcgggt taagacgttt 1320 gtcaaagctg aaaagataaa tttcacagcc aaacctgacc ccgcccctcg tgtgatacag 1380 cctagggatc cacgattcaa cattgtcctg gctaaataca tcaaaccttt ggagccaatg 1440 ttgtacaaag cactggggaa actttacaag taccccgcag ttgctaaggg gtttaacgcg 1500 gttgagacgg gggagatcat cgccggcaag tggcggtgct tcaaagatcc tgtcgtcgtg 1560 ggattagacg cttcccgatt tgatcagcat gtatctgtcg aggcgttgca gttcacccac 1620 gcggtgtaca gagggttcat caagtcacgg gagtttaata acctcctaca gatgatgtac 1680 accaaccgtg gcctagggtc cgctaaggac ggattcgtcc gttacaaggt taaaggtaga 1740 cgcatgagcg gtgatatgga cacctccttg ggcaactgtg tgctcatggt gttgctcacc 1800 aggaatcttt gcaagattct aggcatcccg cacgagctct tcaacaatgg tgatgattgc 1860 atcgtctttt tcgatcgttg tcacttggag aagttcaata atgctgtcaa gacttatttc 1920 gcggacctag ggtttaagat gaaggtggaa ccgccggttg acgtgttgga gaaaatagag 1980 ttctgccaaa cgcagcctat ctatgacggg gagaagtggc gcaccgtgcg ttgcatctcg 2040 agtatcggga aggattgctc atccgttatt agttgggacc aattggaggg gtggtggaat 2100 gccatcgccc agagtggtct ggctgtgtgt ggcggaatgc cgatatacac gtcgttctac 2160 cggtggctag cacgggccgg caagagtgga accaagtgtc agtcacaccc cttgtggaaa 2220 aacgaggggt tgaattggta caggatgagg atcgaacttt ctcacgaggt taatgttacc 2280 cctcaggcgc gccgggcatg cgacgcgggt tttggtattt cccccccgat gcaggtcgcc 2340 attgaggcgt tgtatgacaa gttgcctcca ccgtcccccc accatggccc tccggttaag 2400 gctgtaacac agcgagtgtt caccaattat ttcacgccgg aaagcgcctg tgttagcatg 2460 agcacgaatg aagacaacaa atctgacttt gctgtttacg gtccagtgcc tacagtgatg 2520 tctctttgtg ctcagtgcta ggctcttaaa ttttagcgat ggcgtgactc gatcacaccc 2580 tgaattgaca gggtacagat caagggaagc cggggagtca ccagcccacc ctgaatcgac 2640 agggcaaaaa gggaagccgg gcaccgccca cgtggaatcg accacgtcac ctcttcgcgt 2700 cgactatgtc gtcaacaccc tttcggcccg ccagcctagg acaatggcgg tagggaaata 2760 aatgacgata atcattaatg tcaataacga cgagcgcaag caaccagaag gagctactgg 2820 cagctctgta cggcgaggtg acaataaaag aactcgagga aacaaacctc ggagtcatca 2880 ccccggttcg cgcgaacgaa aaggttacaa tcactcctct cctaccccca aaaactcaaa 2940 gcagggtcag ctccgtactg aagcggttca ggagcacccg aaacacgggg ggactgcttt 3000 ccgtagagaa agtggtggta gtgttcaccc ctcacgtccc cgacgacgtg ctaggagagg 3060 tggagatatg gctccacgac agcatcctcc cccacctcgg gagcgtcgga ccaagactaa 3120 aactcaagct gagcgaaggg cccaagctct tagcgttcta cccaccctac tcgatagcat 3180 tgggggactc gacctcgggc cagccgaggt ctttctccat tgtcaccgag ctgttcgaag 3240 gcaacttcgc accggggtgc agcccattca gcctgttcct catgtggagt ccacgcatcg 3300 aagcagtgac ccacaactac ttgagccgcc caccacgtgc tctgccaatt tgcagaacga 3360 tggtgcggga cgcgttatcg gaggtggcat tccaacagca atacctgaag ggagcgatgt 3420 cgaacaggta tgccatgcct ctcactacga gtgatggcca gcatagagcc atgaaggggg 3480 ctcccagtgc ccttccacca acgggggtgt gtacccaggc ttctaagtga agcttcgctt 3540 cccgccggaa gaccgcggcg gttctgttcc tcccacagga gtacggcaac aacccacctt 3600 gggaaagtgg ggatcccagc attaactcct ttaactaggc gggcgtgttg gttacaatag 3660 gaggggacag ttcgcattga aactgagccc taccacaact ctcatccaca gggtggttgg 3720 gacgcaggtg tttgagggat cgccagccct caggatagtg agctcccgca gagggataag 3780 ctgtccccct gcgacgtggt agtggaacac gtgggatagg ggatgacctt gtcgaccgtt 3840 tgtcggtccc ctgctcctta gagctggcaa ggcgcccatt ggttctacat ttctaccaaa 3900 gttggtggcg gatgtctcac ccatgcgcgg gataaggccc tctccacctt cgccgggtaa 3960 ggctagagtc agcgctgcat gactataact tgcggccgat ccagttgcac gactggtggt 4020 cccccccagt gcctcggtag tctgccgagt gggcggtggt cggattccac cacaccctgc 4080 cacgaggtgc gtggagactt ggccagtcta ggctcgtcgt gattagtagc agcgacgtta 4140 atcaacccgt ccgggcatac aataggaccg gttgtgcttc ttcctctcct tcttagc 4197 //