ID JF682242; SV 2; circular; genomic DNA; STD; VRL; 2753 BP. XX AC JF682242; XX DT 21-MAR-2011 (Rel. 108, Created) DT 23-AUG-2012 (Rel. 113, Last updated, Version 3) XX DE Ageratum enation virus isolate Lucknow segment DNA-A, complete sequence. XX KW . XX OS Ageratum enation virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2753 RA Raj S.K., Srivastava A., Snehi S.K.; RT "Molecular characterization of Begomoviruses associated with vein enation RT disease on Amaranthus hypochondriacus L. in India"; RL Unpublished. XX RN [2] RP 1-2753 RA Raj S.K., Srivastava A., Snehi S.K.; RT ; RL Submitted (22-FEB-2011) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U. P. 226001, India XX RN [3] RC Sequence update by submitter RP 1-2753 RA Raj S.K., Srivastava A., Snehi S.K.; RT ; RL Submitted (22-AUG-2012) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 3983f99d750d73424b3223a66473fccc. DR EuropePMC; PMC4353908; 25674770. XX CC On Aug 22, 2012 this sequence version replaced gi:326325845. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Ageratum enation virus" FT /segment="DNA-A" FT /host="Amaranthus hypochondriacus L." FT /isolate="Lucknow" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="green leaf" FT /collection_date="03-Feb-2011" FT /db_xref="taxon:188333" FT gene 138..494 FT /gene="AV2" FT CDS 138..494 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:J7I2T8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:J7I2T8" FT /protein_id="AFQ32266.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL FT ISVIRARNYVEATSRYNHFHDRFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCP" FT gene 298..1068 FT /gene="AV1" FT CDS 298..1068 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:F2YWY8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F2YWY8" FT /protein_id="ADZ54114.2" FT /translation="MSKRPADIIISTTASKVRRRLNFDSPYVSRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSLTN" FT gene complement(1065..1469) FT /gene="AC3" FT CDS complement(1065..1469) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /note="increases viral replication" FT /db_xref="GOA:J7I9L3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:J7I9L3" FT /protein_id="AFQ32267.1" FT /translation="MDSRTGELITAAQAENGVYTWENQNPLYFKITEHQNRPFLMKEDS FT ITVQIQFNYNLRKALEIHKCFLAYRIWMTSQPPTGQFLRVFKTQVLKYLNNLGIISINN FT VIRAVDHVLWDVLEHIVYVDQSYSIKFNIY" FT gene complement(1210..1614) FT /gene="AC2" FT CDS complement(1210..1614) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /note="transcriptional activator for virus sense genes" FT /db_xref="GOA:J7I292" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:J7I292" FT /protein_id="AFQ32268.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHNHGFTHRGTHHCSSSREWRVYLGESKSPVFQDNRTPEPAISHERGQHHRPNTVQLQP FT EESVGDTQVFSSLPNLDDFTASDWAILKGL" FT gene complement(1517..2602) FT /gene="AC1" FT CDS complement(1517..2602) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="involved in virus replication" FT /db_xref="GOA:J7I8Z6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7I8Z6" FT /protein_id="AFQ32269.1" FT /translation="MAPPKRFQIYAKNFFLTYPHCSFTKEDALSQIQNLQTPVNKKYIK FT ICRELHENGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSTDVKSYI FT DKDGDTLEWGEFQIDGRFARGGQQTANDAAAEALNAGSKEAAMAIIREKLPEKFIFQYH FT NLNSNLDRIFSPPLEVYVSPFLSSSFDQVPEELEEWVSENVMVAAARPLRPKSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNNALRNWALKNAIFVTLEGPL FT YSGSNQSAAQASQEGDEASTC" FT gene complement(2188..2445) FT /gene="AC4" FT CDS complement(2188..2445) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:J7I5Y9" FT /protein_id="AFQ32270.1" FT /translation="MGNLIFTCLSSSKENTNAKITDFSTWYPQPDQHISIRTFRELNPA FT PTSSPTSTRTETPLNGENSRSMEDLHEEVNRQLMMLLQKP" XX SQ Sequence 2753 BP; 753 A; 539 C; 609 G; 852 T; 0 other; accggatggc cgcgattttt ttaaagtggt ccccacaact gacaaagaca tgtccaccaa 60 tctaaatcgt cgctcaaagc ttaattgttg tgtggtccct tatttaaact tgctcaccaa 120 gtagtgcact ccgcactatg tgggatccat tattaaacga gtttcccgaa accgttcacg 180 gttttagatg tatgttagca gttaaatatc tgcagttagt agagaagact tattctcctg 240 atacattagg gcacgattta attagggatt taatttcagt aattagggct agaaattatg 300 tcgaagcgac cagcagatat aatcatttcc acgaccgctt cgaaggtacg ccgccgtctc 360 aacttcgaca gcccatatgt gagccgtgct gctgccccca ttgtccgcgt caccaaagca 420 agagcatggg cgaacaggcc catgaacaga aagcccagga tgtacaggat gtacagaagt 480 ccagatgtcc ctagaggatg tgaaggccca tgtaaggtcc agtcgtttga gtccagacat 540 gacattcagc atataggtaa agtcatgtgt gtcagtgatg ttacgcgtgg aactgggctg 600 actcaccgag tgggtaaaag gttttgtgtt aaatccgttt atgtcttggg taagatatgg 660 atggacgaaa atattaagac caagaaccac actaacagtg ttatgttttt tttagttagg 720 gatcgtaggc ctgtggataa acctcaagat tttggtgagg tttttaacat gtttgataat 780 gagcccagta cggctactgt gaagaatgtt catcgtgata ggtatcaagt gcttcggaaa 840 tggcatgcaa ctgttacggg tggacaatat gcgtcaaagg aacaagctct tgtgaagaag 900 tttgttaggg ttaataatta tgttgtgtat aaccagcaag aagctggcaa gtatgaaaat 960 cattctgaga atgcgttaat gttgtatatg gcatgtacgc atgcctctaa cccagtgtat 1020 gctactttga agatacggat ctatttctat gattctctca caaattaata aatattgaat 1080 tttattgaat aagattggtc tacatataca atgtgttcta atacatccca taatacatga 1140 tcaactgcac gaattacatt attaatactg ataattccta aattatttaa atatttaagc 1200 acttgggtct taaagaccct taagaattgc ccagtcggag gctgtgaagt catccagatt 1260 cggtaggcta gaaaacactt gtgtatctcc aacgctttcc tcaggttgta attgaactgt 1320 atttggacgg tgatgctgtc ctctttcatg agaaatggcc ggttctggtg ttctgttatc 1380 ttgaaataca ggggattttg attctcccag gtatacacgc cattctctgc ttgagctgca 1440 gtgatgagtt cccctgtgcg tgaatccatg gttgtggcag gctaatgcta tgaagtatga 1500 acacccacaa gggagatcaa cacgtcgacg cctcgtcccc ttcttggcta gcctgtgctg 1560 cactttgatt ggaacctgag tagagtgggc cttcgagggt gacgaagatc gcattcttta 1620 aagcccaatt tctgagtgca ttattcttct cttcatccaa gaactcttta taacttgaat 1680 taggtcctgg attgcagagg aagatagtgg gaattccgcc tttaatttga actggctttc 1740 cgtatttggt atttgattgc cagtcccttt gggcccccat gaattcttta aagtgcttta 1800 ggtagtgggg atctacgtca tcgatgacgt tataccacgc atcattgctg taaactttgg 1860 ggcttagatc taaatgaccg cataggtaat tatgaggccc taatgaccta gcccacatcg 1920 ttttacccgt acgactgtct ccctcaatta ctatactttt aggcctcaga ggccgcgcag 1980 cggcaaccat gacattttct gagacccatt cttcaagttc ttcaggaact tgatcaaaag 2040 aagaagataa aaaaggcgaa acataaacct ccaacggagg actaaaaatc ctatctaaat 2100 tagaatttaa attatgatat tgaaaaataa atttttctgg gagtttctcc cttattatag 2160 ccattgcagc ttctttagag cctgcattta gggcttctgc agcagcatca ttagctgtct 2220 gttgacctcc tcgtgcaaat cttccatcga tctggaattc tccccattca agggtgtctc 2280 cgtccttgtc gatgtaggac ttgacgtcgg tgctggattt agctccctga atgttcggat 2340 ggaaatgtgc tgatctggtt ggggatacca ggtcgaaaaa tctgttattt tggcatttgt 2400 attttccttc gaactggata agcacgtgaa gatgaggttc cccattttcg tgaagctctc 2460 tgcagatttt gatgtatttt ttgtttactg gggtttgtag gttttggatt tgggaaagtg 2520 cgtcttcttt agtaaaagag caatgtggat aagtgagaaa gaaatttttg gcatatattt 2580 gaaatctttt tggaggagcc attgacttgg tcaatcggta ctcagctcta gtcttatgtc 2640 aattggtgat caatactcaa tatatagtga gtaccgaatg gcattattcc ttattctcaa 2700 aagaaattca aaattcaaat ttgaaatcca caagcggcca tccgtataat att 2753 //