ID   JF513084; SV 1; linear; genomic RNA; STD; VRL; 1142 BP.
XX
AC   JF513084;
XX
DT   25-JUL-2011 (Rel. 109, Created)
DT   12-FEB-2012 (Rel. 111, Last updated, Version 2)
XX
DE   Beet soil-borne mosaic virus isolate MRM06-mec segment chimeric RNA4/RNA3,
DE   complete sequence.
XX
KW   .
XX
OS   Beet soil-borne mosaic virus
OC   Viruses; Riboviria; Benyviridae; Benyvirus.
XX
RN   [1]
RP   1-1142
RX   DOI; 10.1016/j.virol.2011.12.007.
RX   PUBMED; 22209119.
RA   D'Alonzo M., Delbianco A., Lanzoni C., Autonell C.R., Gilmer D., Ratti C.;
RT   "Beet soil-borne mosaic virus RNA-4 encodes a 32 kDa protein involved in
RT   symptom expression and in virus transmission through Polymyxa betae";
RL   Virology 423(2):187-194(2012).
XX
RN   [2]
RP   1-1142
RA   D'Alonzo M., Lanzoni C., Delbianco A., Rubies Autonell C., Gilmer D.,
RA   Ratti C.;
RT   ;
RL   Submitted (09-MAR-2011) to the INSDC.
RL   DiSTA - Plant Pathology, University of Bologna, Viale Fanin 40, Bologna
RL   40127, Italy
XX
DR   MD5; 2d3fe2758e5d941217b1886c34e50824.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1142
FT                   /organism="Beet soil-borne mosaic virus"
FT                   /segment="chimeric RNA4/RNA3"
FT                   /host="Beta vulgaris"
FT                   /lab_host="Chenopodium quinoa"
FT                   /isolate="MRM06-mec"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /isolation_source="serial mechanical inoculation on lab
FT                   host leaves"
FT                   /collection_date="2006"
FT                   /note="derived from isolate MRM06; chimeric segment derived
FT                   from a spontaneous recombination process between BSBMV
FT                   segments RNA4 and RNA3 after 21 serial
FT                   mechanical-inoculated passages and remained unaltered after
FT                   40 passages acronym: BSBMV"
FT                   /db_xref="taxon:76343"
FT   misc_feature    1..557
FT                   /note="derived from RNA4"
FT   misc_feature    1
FT                   /note="5' CAP"
FT   misc_feature    383..557
FT                   /note="nonfunctional p32 due to mutation; N-terminal part
FT                   of BSBMV RNA4 p32; ORF1"
FT   misc_feature    558..1142
FT                   /note="derived from RNA3"
FT   misc_feature    558..789
FT                   /note="nonfunctional ORF2 due to mutation; C-terminal part
FT                   of BSBMV RNA3 ORF2"
FT   misc_feature    662..681
FT                   /note="coremin region"
FT   polyA_site      1142
XX
SQ   Sequence 1142 BP; 287 A; 188 C; 256 G; 411 T; 0 other;
     aaattcaaaa ctcaaaaata taattttgta tttccagttg attatctgta aaataatctc        60
     ggttaactag ttgtccgatt aacaactcga gtctgatctg cttaaagatc cccaatatta       120
     ttatcaatat tattatcaat tttaacgtgt cgctactcat ctactgttgt tgattgtggt       180
     tggtagtcat tggaaaggtg cctgtgcttg gtgttgcatt gatcagtcgg tttgtggttg       240
     cagaaagcta cttaggtgag gctaaggccg tgttcggaac cttagattca cgagccgcgt       300
     gattaatcgg gtttgtcact gggatccggt ctatcagtaa gagctattcc tttgttaata       360
     ccctttttgg ttagtaacaa ttatggccga tgtggagatt tgccgatgtc aggatagtca       420
     ggaacctttg cttaatgtta ccggatatga tcttacttct cgtgtgatgt ttgagcgaat       480
     tgatattggc cccttagggg tgttgtgcaa tatcggtgtg ttatttcata tgtccgtgat       540
     tcgtcgtcgt gatatttgtt gatggtgaaa acattgacga tgatgccgat gtcatggacg       600
     acgctaacac agatgatggt gattaaaatt tttcgtctct tgacgttaaa catctatctt       660
     agtccgaaga cgttaaacta cgtgtcgttt tatatgacag tgtgggtccg aagacgtaaa       720
     actacatata gtaatgattg taactatgtg ttcgtgagca atccgaatga tgtgttcctc       780
     gcacattgat cgtatatttg agggtggtag gtaaaatagt gtgtggttta tcccgactct       840
     tgtttttgaa caagtgatcc tcggaaatat ccttgcgttt cacaaacgtg tatggcgtgt       900
     ttcctgccta tctgggtttt actatgagcc tttatatttc aaaatataag aatacatagt       960
     agtttaacag gctcgtttgc aagcctccca ttgggtttat gcagacacaa aaagatggct      1020
     tattggttat gcttaacctc atatctatat ctttatcgtt atatttatgt tttatttggt      1080
     tgtattgtac tgactgggtg tgaaatgtac cagtccttgt agggtgtacc ttcagtatat      1140
     tg                                                                     1142
//