ID JF513083; SV 1; linear; genomic RNA; STD; VRL; 4615 BP. XX AC JF513083; XX DT 25-JUL-2011 (Rel. 109, Created) DT 25-JUL-2011 (Rel. 109, Last updated, Version 1) XX DE Beet soil-borne mosaic virus isolate MRM06 segment RNA2, complete sequence. XX KW . XX OS Beet soil-borne mosaic virus OC Viruses; Riboviria; Benyviridae; Benyvirus. XX RN [1] RP 1-4615 RA D'Alonzo M., Lanzoni C., Delbianco A., Rubies Autonell C., Gilmer D., RA Ratti C.; RT "Construction and analysis of new beet soil borne mosaic virus genomic RT full-length infectious clones for the study of the mechanisms involved in RT the plant-benyviruses interaction"; RL Unpublished. XX RN [2] RP 1-4615 RA D'Alonzo M., Lanzoni C., Delbianco A., Rubies Autonell C., Gilmer D., RA Ratti C.; RT ; RL Submitted (09-MAR-2011) to the INSDC. RL DiSTA - Plant Pathology, University of Bologna, Viale Fanin 40, Bologna RL 40127, Italy XX DR MD5; 8e8b8b6924903242aa10a327c5fd4bc1. XX FH Key Location/Qualifiers FH FT source 1..4615 FT /organism="Beet soil-borne mosaic virus" FT /segment="RNA2" FT /host="Beta vulgaris" FT /isolate="MRM06" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="host plant grown in infected soil in FT greenhouse" FT /collection_date="2006" FT /note="acronym: BSBMV" FT /db_xref="taxon:76343" FT 5'UTR 1..144 FT CDS 145..2205 FT /codon_start=1 FT /transl_except=(pos:718..720,aa:Tyr) FT /product="75 kDa protein" FT /note="readthrough protein; involved in structure and FT vector transmission" FT /db_xref="GOA:G1BIV2" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:G1BIV2" FT /protein_id="AEK48985.1" FT /translation="MVDEGRYMTWKDATHNKLMTDRWARVSSVQATINQALSLDLSKAA FT SLPVIKANFSSLGANWSEDGDVFVAPMVRFPVTLNQFGALVLWLNLSDPAFAILMTKVF FT TLTNAGGADNASASSRREVVAGSRPETSGKSVGTDESGSYTLTTTLQAFNQAIRLPEVL FT WTRDKFEREWNLPWTPTRGVTPAVPRTNYQLNAARTMAHIRAALKARLYPGDSIEWVGW FT VHSYPPPPYDGYDVPSLDIINEKLAADDVGGLVLPTPDIPGGPNFEVSEDIEQTGRNGL FT WLMVGLLLAALAVGVGTAAYHRRKLRSRLVELKSLWFSRGSGGGGDFTVELPTRTTDAF FT SLGTTISEHAPPPVGTMRHRSTTATDSHEALPFETWVYLNLSRVYFSIGCSDLFYATRE FT FVTVFNGEFEGLIELLEASDEDDGVYTDAESAVIVGTSAIVNDHDQFDLNTVILEKRIK FT FKRLSLEEAELNRQESMTIEFADEERRTLMHKLESDRLEATHKVNKAAADAEAALSVAV FT LAAKEARTYDDKLAFDRACKEKELRLRELEVERMPGKTERYIHTGIQGGAQLAGALAVG FT SMLRTRGVSNITPSNASGSPTGIGRVRSASQPVPTSLSGGSVQGANNNNSVGSVSSGSR FT VESLGYNSAIRNHNTFWSKLRIGSEWRQNSISRMQARPLAGGGIPPSAPAV" FT CDS 145..720 FT /codon_start=1 FT /product="coat protein" FT /note="21 kDa" FT /db_xref="GOA:O89946" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:O89946" FT /protein_id="AEK48984.1" FT /translation="MVDEGRYMTWKDATHNKLMTDRWARVSSVQATINQALSLDLSKAA FT SLPVIKANFSSLGANWSEDGDVFVAPMVRFPVTLNQFGALVLWLNLSDPAFAILMTKVF FT TLTNAGGADNASASSRREVVAGSRPETSGKSVGTDESGSYTLTTTLQAFNQAIRLPEVL FT WTRDKFEREWNLPWTPTRGVTPAVPRTN" FT CDS 2124..3272 FT /codon_start=1 FT /product="42 kDa protein" FT /note="cell-to-cell movement protein; triple gene block FT protein" FT /db_xref="GOA:O72591" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O72591" FT /protein_id="AEK48986.1" FT /translation="MAPEQHKQNASETASGRRNSSVRSRGMSKDDWSVTHPDDVFSIIE FT KTLVEDGYKWHGVKPGHCDWDKLEQSGAIKNFKGTLEGEVDSSCSLTCNAAAIKLDIVE FT RLDVSSDWSARVGIVLGAPGVGKSTSIKHILDTYGSRYKMVLCLPVKQLLDGVFSGRMD FT TFLIDDIFSRSVDYGKYHTMLVDEITRVHMCEVLVLAGYLGIKNVICFGDPAQGINFKA FT GSAVNYNFPVIAECYSSRRFGVATADLINSCNGGGKSVVGNNDVKDNWTFEELCGKIEE FT MSTVLVATHATKEFLADDGIEAVYYEDAQGMTYDVVTIVLKDEFDDDAICDSNVRAVLL FT TRARKGGLLKVDPNIAARFKNGDFNSRGVSKACTGDTFCEDR" FT CDS 3272..3628 FT /codon_start=1 FT /product="13 kDa protein" FT /note="cell-to-cell movement protein; triple gene block FT protein" FT /db_xref="GOA:O72592" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:O72592" FT /protein_id="AEK48987.1" FT /translation="MSREITARANKNVPIVVGVCVVAFFVLLAFMQQKHKTHSGGDYGV FT PTFSNGGKYRDGTRSADFNSNNHRAYGCGGSKSSVTGKVGQQLLVLALVVAVFVLFMRG FT CWSSPEHICNGSCG" FT CDS 3612..4010 FT /codon_start=1 FT /product="15 kDa protein" FT /note="cell-to-cell movement protein; triple gene block FT protein" FT /db_xref="GOA:O72594" FT /db_xref="InterPro:IPR010470" FT /db_xref="UniProtKB/TrEMBL:O72594" FT /protein_id="AEK48988.1" FT /translation="MVLVVKVDFSTIVLYIVAGVVVVSVLYSPFFSNEVKAGGYAGAIF FT PNGGCIMDRNSFAQFGGCDIPKYVADSISRVAIKELDADIKADLNSVVAKRVVLYEGLA FT QLCYRVFSWLVCLFMVCLMLFVWFWYHS" FT CDS 4038..4400 FT /codon_start=1 FT /product="14 kDa protein" FT /note="post-translation gene silencing suppressor protein" FT /db_xref="InterPro:IPR009884" FT /db_xref="UniProtKB/TrEMBL:O72595" FT /protein_id="AEK48989.1" FT /translation="MEKSNSIGVYVKDPITNDCRLFSVKCGNWCLFTNHVFVTYRGKND FT DEKVVKDTCRLHFHVKCVSCSSKVTFKANNRDHLEWLSKGFVRVNRNFSIVGACSKCRG FT VFDSCAQQDELDNNVV" FT 3'UTR 4401..4615 FT polyA_site 4615 XX SQ Sequence 4615 BP; 1128 A; 778 C; 1218 G; 1491 T; 0 other; aaattctaat tattatctcc attgaataga atttcaccaa ctattgtctg atatcttgtc 60 ctgggggcaa ttttattcag tgccctaact ttgaaatagg tgcgagtaat aagtagccgc 120 cgtccaggag aagttgctta caatatggtt gatgaaggta gatatatgac atggaaagat 180 gcaactcata ataagttgat gaccgaccga tgggcacgcg tatcaagcgt ccaggcgacc 240 attaaccagg ctttgagcct cgatctgtct aaagccgcaa gcttacctgt tattaaggcc 300 aattttagta gtctcggtgc taattggtct gaagatggtg atgtgtttgt ggcacctatg 360 gttcggtttc cagttaccct caatcaattt ggtgcattgg ttttgtggct caacttatct 420 gaccctgctt tcgctattct tatgacgaaa gtttttacgt tgactaatgc cggtggagcc 480 gacaatgcct ccgccagttc acgtcgtgaa gttgtggctg ggagccgacc cgaaacttct 540 ggtaagtctg taggtaccga tgagagtggc agttatactt tgaccaccac tttacaagct 600 tttaatcaag ctatccgctt acctgaggtt ctgtggactc gtgataagtt tgaacgggag 660 tggaatctgc catggacccc tactaggggt gttactcctg ccgttccacg caccaattag 720 caattaaatg ctgctcgaac tatggcacat attcgagcag cattaaaggc gcgtctgtat 780 cctggtgaca gtattgagtg ggttggatgg gtgcatagtt acccccctcc accatatgat 840 gggtacgatg ttccgtcttt agatattatt aatgagaaac ttgctgctga tgatgttggt 900 ggtttggtgt tacctacacc tgatattcct ggtggtccca attttgaggt ctccgaggat 960 attgagcaaa ctggtcggaa tggtttgtgg ttgatggtcg ggttgctatt agctgccttg 1020 gctgttggtg ttgggactgc tgcctaccat cgtcgcaagt tgcgtagtag gttagttgaa 1080 ctaaagagtc tatggttttc taggggttct ggtggcggcg gtgatttcac tgttgagtta 1140 ccaactagaa ctactgatgc ctttagttta ggtaccacta tttctgaaca tgctccacct 1200 cctgtaggta ctatgcgtca tcgttcgact acggcgactg atagtcatga ggcccttcct 1260 tttgaaacat gggtttattt aaatctctct cgtgtgtatt ttagtatcgg gtgttctgat 1320 ctcttttatg cgactagaga atttgttact gtgtttaatg gggagtttga gggtcttatc 1380 gaactacttg aggcgtctga tgaggatgat ggtgtttata ctgatgctga gagtgctgtc 1440 attgtgggta ctagtgctat tgttaatgac cacgatcaat ttgatctcaa tactgtgatt 1500 cttgaaaagc gcataaagtt taaacggctt tctttagagg aggcggaact taatcgtcag 1560 gagtctatga ccatcgagtt tgccgatgag gaacgtcgta cgctcatgca taagttagaa 1620 agcgatagac ttgaggcgac gcataaggtg aataaggctg ctgctgatgc tgaggcagct 1680 ctatcagttg ctgttctggc tgctaaagag gctcgtactt atgatgataa attggctttt 1740 gatagagctt gtaaggaaaa ggagctaagg ctaagagagc ttgaggttga gcgtatgccc 1800 gggaagactg aaagatatat tcacacaggt atacaaggtg gtgctcaact cgctggtgct 1860 ttagctgtcg gtagtatgtt acgaacacgt ggtgttagta atataactcc gagtaatgct 1920 agtggtagtc ctaccggtat tggtcgtgtt cgtagtgctt ctcagcccgt acccactagt 1980 ttgtctggtg gttctgttca gggggctaat aataataata gtgttggcag tgttagttca 2040 ggaagtaggg tagagtcgtt agggtataat tcggctattc gcaatcataa caccttttgg 2100 tccaaacttc gtattggaag tgaatggcgc cagaacagca taagcagaat gcaagcgaga 2160 ccgctagcgg gcggcggaat tcctccgtcc gctcccgcgg tatgagtaag gatgactggt 2220 ctgtcaccca cccagatgat gttttctcta ttattgagaa aacattggtg gaggatgggt 2280 acaaatggca tggggtaaaa cccggtcatt gcgattggga taagctagag cagtctggtg 2340 ctattaagaa ttttaaaggt actttagaag gcgaggtcga tagtagttgt tcattaacat 2400 gtaacgccgc ggcaattaag ttggatatag tagaaagatt agacgtgtct tctgactggt 2460 ccgctcgggt aggcattgtg ttaggtgcgc ctggtgttgg gaaatcgact tcaattaagc 2520 acatcttgga cacttatggt tctcgttata aaatggtgtt atgtttacca gtcaaacagt 2580 tactcgacgg ggtgttttcg ggtagaatgg acacttttct gattgatgac atatttagtc 2640 gctctgtaga ctatggtaag taccacacta tgttagtaga cgagatcact cgcgttcata 2700 tgtgtgaggt cctggtgttg gctggttatt taggcattaa aaatgttata tgtttcggcg 2760 accctgcaca aggtattaac tttaaggcag ggtctgctgt taactataac tttcctgtta 2820 ttgctgagtg ctactctagt cgtaggttcg gggttgccac ggctgatctc ataaactcct 2880 gcaatggtgg tgggaaatca gttgttggta ataacgatgt taaagacaac tggacatttg 2940 aagaattgtg cggtaaaatc gaggaaatgt ccactgtgct tgttgcaaca cacgccacaa 3000 aggagttctt agctgatgat ggcattgaag ctgtatatta cgaagatgca caaggtatga 3060 cttatgatgt ggttaccatt gtgcttaagg atgagtttga cgacgatgcc atctgtgata 3120 gcaatgtgag agctgtgttg ttaactaggg ctagaaaagg cggtttactt aaggttgatc 3180 ctaatattgc ggccaggttt aaaaatggtg attttaattc acgtggagtt agtaaggctt 3240 gcacaggtga taccttttgc gaggatagat aatgtctaga gaaataacgg cccgtgctaa 3300 taagaatgtg cctattgttg ttggtgtttg tgttgttgct ttctttgtat tgctggcttt 3360 catgcaacaa aaacataaga cgcactctgg tggcgattac ggggttccaa ctttttcgaa 3420 cggtggaaag tatagggatg ggactaggtc tgcggacttt aatagtaata atcatcgtgc 3480 ttatggctgt ggaggttcta aatctagtgt gactggcaag gttgggcagc agctgcttgt 3540 gcttgcccta gtagtagctg tctttgtttt gttcatgcgt ggttgctggt cctctcctga 3600 gcatatttgc aatggttctt gtggttaagg ttgatttttc tactatagtt ttgtatatag 3660 ttgctggtgt tgtagttgtg agtgtgctgt actcaccatt ctttagtaat gaagtgaagg 3720 ctggcggtta tgccggtgcc atttttccaa atgggggttg cattatggat aggaattcgt 3780 ttgcacagtt tggtggttgt gatatcccaa aatatgtggc tgattctatc tctcgtgtgg 3840 ccatcaagga attagacgcc gatataaaag ccgacttgaa tagtgttgtt gctaaaagag 3900 tagtgttgta cgaaggtttg gcacagttat gttatagggt tttctcttgg ttggtgtgtt 3960 tgttcatggt gtgtttaatg ttgtttgtgt ggttttggta tcatagttaa ttaggtgaac 4020 gcatcttatt attagtaatg gagaaaagta atagcatagg ggtgtatgtt aaggacccta 4080 tcacaaatga ttgtaggttg tttagcgtta aatgtggcaa ctggtgctta ttcacaaatc 4140 atgtttttgt gacttaccgt ggaaagaacg atgatgagaa agtcgttaaa gacacgtgta 4200 ggttgcattt tcacgtaaaa tgtgtatctt gctccagtaa agtcactttt aaagcgaaca 4260 acagagatca tctggaatgg ttgtctaaag gtttcgttcg tgttaataga aatttttcta 4320 ttgtaggtgc ttgtagtaag tgccgcggtg tgtttgatag ttgtgcgcag caagatgagt 4380 tggacaacaa tgttgtctaa ctctttaaag agactgttgt atatataata atcagggcca 4440 tgccacaggc ctcccattgg gttgttccga gggttgttgt ggtgatataa atgatattat 4500 taataataat aatagtgtca tcggtaatat attattgtta ctggtgttaa ggttgtaatg 4560 tactgaccgg gtgtgaattg taccggtcct tgtagggttt attttcagtt tattg 4615 //