ID JF513082; SV 1; linear; genomic RNA; STD; VRL; 6679 BP. XX AC JF513082; XX DT 25-JUL-2011 (Rel. 109, Created) DT 25-JUL-2011 (Rel. 109, Last updated, Version 1) XX DE Beet soil-borne mosaic virus isolate MRM06 segment RNA1, complete sequence. XX KW . XX OS Beet soil-borne mosaic virus OC Viruses; Riboviria; Benyviridae; Benyvirus. XX RN [1] RP 1-6679 RA D'Alonzo M., Lanzoni C., Delbianco A., Rubies Autonell C., Gilmer D., RA Ratti C.; RT "Construction and analysis of new beet soil borne mosaic virus genomic RT full-length infectious clones for the study of the mechanisms involved in RT the plant-benyviruses interaction"; RL Unpublished. XX RN [2] RP 1-6679 RA D'Alonzo M., Lanzoni C., Delbianco A., Rubies Autonell C., Gilmer D., RA Ratti C.; RT ; RL Submitted (09-MAR-2011) to the INSDC. RL DiSTA - Plant Pathology, University of Bologna, Viale Fanin 40, Bologna RL 40127, Italy XX DR MD5; d4a583b7670ce7e9b58bfe1f1e0c4704. XX FH Key Location/Qualifiers FH FT source 1..6679 FT /organism="Beet soil-borne mosaic virus" FT /segment="RNA1" FT /host="Beta vulgaris" FT /isolate="MRM06" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="host plant grown in infected soil in FT greenhouse" FT /collection_date="2006" FT /note="acronym: BSBMV" FT /db_xref="taxon:76343" FT 5'UTR 1..153 FT misc_feature 1 FT /note="5' CAP" FT CDS 154..6498 FT /codon_start=1 FT /product="polyprotein" FT /note="238 kDa protein" FT /db_xref="GOA:G1BIV1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR008746" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G1BIV1" FT /protein_id="AEK48983.1" FT /translation="MADSFGFSPMEVLLFRGESLDQLTSDMPLDVQWDVVYSARCYAIW FT KHDLTHLNPLLKNSQRLAKRWDKLISGFGGPVPLDKLLTALLALMRYCITMGVSVQDIY FT LSDVVTTSDNLLHVSRVHGCVTFSWLYAKLSLFGRHGRFWVGSSSHTAATMIEGSRAVN FT GPDVAISEMVEAFHLEVKSSLVVTVSLTPREKKILERELGFVPLYKQKTRAPRNHPVLA FT ALREVMRQEYAASSNILNTKLKTLVIGAASREVNCYSSNPSVHYYFANKDSKDLVRTTL FT ELLHSALATKYRNMESGERELMNNLKGCGYIVKRSTDSGVYEVVSDKDVAEVLRYAKTV FT ASTKRDAKQKPVGKRKMIMSEATRRTIELHELSRVVAEEKKIPNHFHFDERSFGSVGSF FT TQLVCEDVGYNFSVDAWLHLFNVTGAQTAVGYMALPNELLFEHYPISDYYDYWEGIEKH FT GALGGITISPLKNGQVVGMPKGVFQASQFCNSAAGLGIPGSKMGTVERIICHMSDGFGN FT GYNHVKSDWQTLLKNPILASPKYNFAIEVDLQGRYGCLATFRLTRVTGVKYVARTIKLR FT PEDRYVRVLDLLHIVRSIRQKGHAGLREPYQYFPVYKREVDTTVSYCFSIAEKSLTVQN FT IANFIRHHIGGVSLVNKELVSAWRLNPQLVPSFAYAVYFYVINLRGELDGMLEKLMKKG FT ITWSDRLKANVSAFLRDMVDPISFLWTWLFERRLVDQIFEDGTDVFYQMDRACVDDKAL FT KLSEHLNVTRDFMPADTLLPEGWVLDDWEKAPDSLKTLSAAASLPIECGTINCVGKSFK FT SIRSLLPPSVVTSPVEQFFKAGGKFRNDSEFAELLSAHYRWQMDNSFCACQVCSALTGQ FT TGSQVVECRWKEESLYTFSMSQTEVDDFRNEVKAQSIEKGNRFGELLVGVHQKIPTQAF FT EVSVRLEYIKGGPGTGKSFLIRSLADPIRDLVVAPFIKLRSDYQNQRVGDDVVSWDFHT FT PHKALDITGKQVIFVDEFTAYDWRLLAVLAYRNHAHTIYLVGDEQQTGIQEGRGEGVSI FT LNRIDLSKISTHVPIMNFRNPVRDVKVLNYLFGARMVPMSSIEQGFCFGDIKDFSSLSN FT IPDTKIVHYSDETGEHMMPDYVRGISKTTVRANQGSTYDNVVLPVLPSDLKLINSQELN FT LVALSRHKNKLTILLDNDGMNIGATLKGMIEGVPEELERKDYIIGMYLGNHLPIKKEFF FT FPESEFAKSFRLMVAKYEAFVPYDSDLPTLVSQGDVVVLDVSRVENDINDTFECADFYN FT LISRPNNCLVVAISECLGVTLEKLDNLMQANVATISKYHNWLRKKTPSTWEDCRLFADA FT LKVSMHVKVLSDKPYDLNYLVDGAASNITLHLLGKESDGHFVAAPISGGSASTSSGNNN FT SASSSTSSEDDEEFDVTNLFADSGVSPTDMDAFCGFLEATIMTYFDKHDLPNSDWAHPV FT DGADGYYQINVEKFGLSECCQAFLRALDVFKLDSSQKKVVYKWLRSALKDKQFHWRATP FT GNTSASSSGSDVDNDFVNLAGGKTKSKSSADVAPADTLRQSFMDYASEFIPILIADAPA FT VLPLVEPDPIVSKCMVPEFDAFLLIKEFDLDNGADEYQCSYLNEAVANRIGDKFVSGVL FT DTDIISPLNLRGHPVSETVKYHSMCVAPAQIYFKRNQWQELQVQQARYLFRKVRNSPSS FT TQDTVARMVAQMFVSDCLVPNVAEVFSTSNLWRIMDKAMHDMVTKNYQGQMEEEFTRNA FT RLYRFQLKDIEKPLKDSETDLAKAGQGILAWSKEAHVKFMVAFRVLNDLLLKSLNSNVV FT YDNTMSEVEFVANINAAMSTVPGSAINGVIDAAACDSGQGVFTQLIERYIYSALGISDF FT FLDWYFSFRERYIMQSRYVRAHMSYVKTSGEPGTLLGNTILMGAMLNAMLRGTGPFCMA FT MKGDDGFKRQANLKINTDILKLIKKETVLDFKLDLNVPITFCGYALSNGHLFPSVSRKL FT TKIAAHRFREYKHFCEYQESLRDWIKNLPKDPNVYADFLECNASLSCRTTDDVQRWLDA FT IISVSRIGYAQFMMMFPLREVAMSLPPVEDELQVLSSTKVNVSIGENISNFVRKVARVD FT MKKF" FT 3'UTR 6499..6679 FT polyA_site 6679 XX SQ Sequence 6679 BP; 1658 A; 1069 C; 1595 G; 2357 T; 0 other; aaattcgatc tttcccaccc accatcattg aatcgttatt cgtatactgg aacgcagtta 60 ggagtggctc caaagcgtct cgtttaaaaa tagattgcga agtgagttca cctaagacga 120 cgtcggtgtt ttacgaattt ttatataatc aagatggcag attcgtttgg tttttctcca 180 atggaggttt tgctgtttcg tggtgagtca ttagatcagc tgacatctga catgcctttg 240 gatgttcagt gggatgttgt ctactcagct agatgctatg ccatttggaa gcatgatctt 300 actcatctca atccgttgct taagaattcg caacgtttgg caaaacgctg ggacaagttg 360 atttcgggct ttggtggtcc tgtaccttta gacaagttat tgactgcttt acttgctctt 420 atgaggtatt gtatcaccat gggggtgtct gtacaggata tctatttatc tgatgttgtt 480 acaacttcag ataatttgtt acatgtgtct agggttcatg gttgtgttac ttttagttgg 540 ttgtatgcca aattgtcttt gtttggtagg catggtaggt tttgggttgg atcttctagt 600 catactgctg caactatgat tgaagggtct cgtgctgtta atggtcctga tgtggctatt 660 tctgaaatgg tagaagcttt tcatttggag gttaagtcct cactcgtggt caccgtttct 720 ctaactccta gagagaagaa gatactagag agagaattgg gttttgtccc attatataag 780 cagaagactc gtgctccacg taatcatcct gtgttggctg cgttgcgtga agttatgaga 840 caagagtatg cggctagtag caacatttta aatacaaagt tgaagacttt ggtgattggt 900 gcggccagtc gtgaggttaa ttgttattct tctaatcctt ctgttcatta ttactttgct 960 aataaagata gtaaggattt agtgagaact actttggagt tgttgcacag tgccttggct 1020 acaaaatatc gtaatatgga gagtggtgaa cgtgagctta tgaacaattt aaaaggttgt 1080 gggtacattg ttaagaggtc taccgatagt ggtgtttatg aggttgtctc agataaagat 1140 gttgctgagg tattgaggta tgctaagact gtcgcttcta ctaagcgtga tgctaagcaa 1200 aaacctgttg gaaaaaggaa aatgataatg tctgaggcaa ctagaaggac tatcgagttg 1260 catgagctgt ctagagttgt ggcagaggaa aagaagatcc cgaatcattt tcattttgat 1320 gagcgtagtt ttggttctgt tggtagtttt actcaattag tttgtgaaga tgttgggtat 1380 aatttttctg tagatgcttg gttacatttg tttaatgtta cgggtgcgca gactgctgtt 1440 ggttatatgg ctttgccaaa tgagttgtta tttgaacatt atcctatctc tgattattat 1500 gattattggg aaggtattga aaaacatggt gctttgggcg gtatcactat ttccccatta 1560 aagaatgggc aagttgttgg tatgccaaag ggtgtttttc aagcttcaca gttttgtaat 1620 tcagctgctg ggctcgggat tcctgggtcc aagatgggaa ctgttgaacg tatcatatgt 1680 catatgtcag acggctttgg caacgggtat aatcatgtta agagtgattg gcaaacattg 1740 cttaagaatc caattttagc gtcacccaaa tataattttg ctatagaggt agacttgcaa 1800 ggacgttatg ggtgtcttgc cacttttcgt ctgacgcgag tcaccggcgt gaagtatgtt 1860 gctagaacta ttaaacttag acctgaggat agatatgttc gtgtgctaga tttgctacat 1920 attgtgcgta gtataaggca gaaaggacac gctggtctta gagaacccta tcaatatttc 1980 cctgtttata agcgtgaggt tgataccact gtctcgtatt gtttttcaat agctgaaaag 2040 tctctgactg tgcagaacat tgcaaatttt attcgacatc acattggtgg ggtgtctttg 2100 gttaataagg agcttgtttc tgcctggagg ttgaatccgc aacttgtacc gtctttcgcc 2160 tatgctgttt atttttatgt tattaatttg agaggcgaat tagatggtat gttggagaag 2220 ttgatgaaga agggtatcac ttggtcagat cgactcaaag ctaatgtatc tgcttttttg 2280 agagatatgg ttgatcctat tagctttctt tggacatggt tatttgagcg tcgtttagtc 2340 gatcaaattt ttgaggatgg taccgatgtt ttttatcaga tggatcgtgc ttgtgtggat 2400 gataaggcat taaagttgag tgaacattta aatgtcactc gtgattttat gccggctgac 2460 actttattgc ccgagggatg ggttttggat gattgggaga aggctccaga tagtctgaag 2520 actttgtccg ctgctgcttc cctacctatc gaatgtggga ctattaattg tgttggcaaa 2580 tctttcaaga gtatccgctc tctgttgcca ccatctgtcg ttacctctcc tgttgagcag 2640 tttttcaaag ctggcggcaa atttcgaaat gatagtgagt ttgctgagtt gttgagcgct 2700 cattatcgtt ggcaaatgga caattcgttt tgtgcttgtc aggtttgttc tgctttaaca 2760 ggtcagactg gctcccaggt tgttgaatgt agatggaaag aagagtcttt gtatactttt 2820 tctatgtcgc aaaccgaggt tgacgatttt agaaatgaag ttaaggctca gtctattgaa 2880 aaagggaatc ggtttggaga gttattggta ggtgtacatc aaaaaattcc aactcaagct 2940 tttgaggttt ctgtgcggct tgaatatatc aagggtgggc ctggcactgg taagtccttt 3000 ctgataaggt ctttagctga tcctataagg gatcttgttg tggctccttt tatcaaattg 3060 aggtccgatt atcaaaatca acgtgtgggt gatgacgttg tttcttggga ttttcacact 3120 ccgcataagg ctttggatat cacaggtaag caggtgattt tcgtggatga atttactgct 3180 tacgattggc gtttgcttgc tgttttggct tatcgaaatc atgctcatac catatatctt 3240 gttggggatg agcaacaaac tggtatacaa gagggtcgtg gtgaaggggt ttccattctt 3300 aataggattg atttatctaa gatctcaaca catgttccta ttatgaattt tagaaatccc 3360 gttcgagatg ttaaggtctt gaattattta tttggtgctc gcatggttcc aatgtctagt 3420 attgagcagg gtttttgttt cggggatatt aaagattttt cttctttatc taatatacct 3480 gatactaaga tcgttcacta ttctgacgag accggtgagc atatgatgcc tgactatgtt 3540 aggggtattt ctaagaccac tgtacgtgct aatcaaggaa gcacttatga taatgttgtg 3600 ttgcctgtcc taccatctga tttgaaattg atcaactctc aggaattgaa tttggttgct 3660 ttgtctcgac ataagaacaa attaaccatt ttgttggaca acgatggcat gaatataggt 3720 gctactttaa agggtatgat tgaaggtgtg cctgaggaac ttgaacgtaa ggattacatt 3780 attggtatgt atttgggcaa tcatctacct attaagaaag agttcttctt tccggagtct 3840 gaatttgcaa aatcttttag attgatggtt gcgaagtatg aggcttttgt gccttatgat 3900 agcgatttac caactttggt ttcgcagggt gatgtcgttg ttttggatgt ttctcgtgtt 3960 gagaacgaca ttaacgacac atttgagtgt gctgattttt acaacttgat ttctcgacca 4020 aacaactgtt tggttgtagc catttctgaa tgcctgggtg tcactcttga aaaactagat 4080 aatttgatgc aggccaatgt cgctactatt tcaaagtatc acaattggtt gagaaagaag 4140 acaccttcca catgggagga ttgtaggttg ttcgctgatg ctttgaaagt ttctatgcat 4200 gttaaggtgt tgtctgataa accttatgat ttaaattatt tggttgatgg ggcggcatct 4260 aacattactc ttcatttgct tgggaaagaa agcgacggtc actttgtggc agcacctatt 4320 tccggtggta gcgcttctac ttcttctggt aataataata gtgcttctag ctccacttca 4380 tctgaggatg atgaagagtt tgacgttact aatttatttg ctgatagtgg tgtgtctcca 4440 actgatatgg acgctttttg cggttttttg gaggctacta ttatgactta ttttgataag 4500 catgatttgc caaattctga ttgggcacac cctgttgatg gtgctgatgg atattatcag 4560 ataaatgttg agaaattcgg gttgtctgag tgttgtcaag ctttccttcg cgctttggat 4620 gtgttcaaac ttgatagttc gcagaaaaag gtagtgtaca agtggcttcg tagtgccctt 4680 aaagataaac aatttcattg gcgggccact cctggtaaca cgtcggctag ttcatctgga 4740 tctgatgttg ataatgattt tgttaatcta gccggtggta agactaaatc taagtcgagt 4800 gctgatgtcg ctccggctga tactttgaga caaagtttta tggattatgc ttcggagttc 4860 atacctattt taattgctga tgcccctgct gttttgcctt tggttgaacc cgaccctatt 4920 gtttccaaat gtatggttcc cgaattcgat gcttttttat taatcaagga atttgatttg 4980 gataatgggg ctgatgagta ccaatgttct taccttaatg aagctgttgc caatcgtatt 5040 ggcgataaat ttgtttcagg tgttttggat actgatatca tttctccatt gaacttgcgt 5100 gggcatcctg tttccgagac tgtgaaatat catagtatgt gcgtagcacc tgcccaaatt 5160 tactttaagc gtaatcagtg gcaagagttg caggtgcagc aggctaggta tttgtttcgg 5220 aaggttcgta actcaccctc ttctacacag gacacagttg ctcgtatggt tgctcagatg 5280 tttgtttcag attgcttagt acctaatgtt gctgaggtat tttcaacatc taatttgtgg 5340 agaatcatgg ataaggctat gcatgatatg gtcacaaaaa attatcaggg gcagatggaa 5400 gaagaattca ctcgaaatgc gaggttgtac agattccaat tgaaagatat tgaaaaacct 5460 ttaaaggatt ctgagactga tcttgctaaa gctgggcaag gcattttagc ttggtccaaa 5520 gaggcgcatg tgaagtttat ggtagctttt agagttttga atgatttatt attgaaatct 5580 cttaactcca atgttgtgta tgataataca atgtcagagg tggagtttgt tgccaacatt 5640 aatgctgcca tgagtactgt tccggggagt gctattaatg gagtcattga cgctgctgct 5700 tgtgattccg gtcaaggggt ttttacgcaa ctcattgaaa ggtatatata ttctgctctt 5760 ggaatttcag atttcttcct cgattggtac ttttcctttc gggagagata cattatgcag 5820 tctcgatatg ttcgtgcaca tatgtcttac gttaagacta gtggtgagcc tggcacatta 5880 ttgggtaata ctattttaat gggtgctatg cttaatgcca tgcttcgtgg gactgggcct 5940 ttttgtatgg ctatgaaagg tgatgatggg tttaaaagac aggctaattt gaaaattaac 6000 actgatattt tgaaattgat taagaaagaa acggtgttgg attttaagtt agatttaaat 6060 gttcctatca ctttttgtgg ttatgcttta tctaatggtc atttattccc aagtgtttcg 6120 cgtaagctga caaagattgc tgctcatcgt tttcgtgagt acaaacattt ttgcgagtat 6180 caagaatctt tgcgtgattg gattaaaaat cttcccaaag atcctaatgt ttacgctgat 6240 ttcttagagt gtaatgctag cttgtcctgc cgcacaactg atgatgttca acgttggctg 6300 gatgctatca tttctgtttc tcgcattggc tatgctcaat ttatgatgat gtttcctttg 6360 cgtgaggttg ctatgtcttt gcctcctgtt gaagacgagt tacaagtgtt atcttccact 6420 aaggttaatg tttccattgg ggaaaacatc tctaactttg ttaggaaggt tgctcgtgtt 6480 gatatgaaaa aattttaaat gctttgtttg cgttattttg attttaaata aaggccatgc 6540 cacaggcctc ctatcttcgg aaggttgttg tggtttcttt tcctttgtgg ttttctttta 6600 gttttctttt ggttgtaatg tactgactgg gtgtgaattg taccagtcct tgtagggttt 6660 gctatcagtg tattgatat 6679 //