ID JF507725; SV 1; linear; genomic RNA; STD; VRL; 6021 BP. XX AC JF507725; XX DT 07-MAY-2013 (Rel. 116, Created) DT 07-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Chickpea chlorotic stunt virus strain CHN, complete genome. XX KW . XX OS Chickpea chlorotic stunt virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-6021 RX DOI; 10.1007/s00705-012-1301-3. RX PUBMED; 22476900. RA Zhou C.J., Xiang H.Y., Zhuo T., Li D.W., Yu J.L., Han C.G.; RT "Nucleotide sequence of a chickpea chlorotic stunt virus relative that RT infects pea and faba bean in China"; RL Arch. Virol. 157(7):1393-1396(2012). XX RN [2] RP 1-6021 RA Zhou C.J., Xiang H.Y., Li D.W., Yu J.L., Han C.G.; RT ; RL Submitted (08-MAR-2011) to the INSDC. RL Plant Pathology, China Agricultural University, 2 Yuanmingyuan West Rd., RL Haidian District, Beijing 100193, China XX DR MD5; 77d1da5c49cfdce2ef8762441f0c75ca. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..6021 FT /organism="Chickpea chlorotic stunt virus" FT /host="pea" FT /strain="CHN" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Hai-Ying Xiang" FT /collection_date="15-Aug-2010" FT /PCR_primers="fwd_name: Cpc001F, fwd_seq: FT acaaaagaaagcaagagggaaaac, rev_name: Cpc1485R, rev_seq: FT ggaaaactcttctagcaattctt" FT /PCR_primers="fwd_name: Cpc1351F, fwd_seq: FT gagaatagaaattatatggcc, rev_name: Cpc3065R, rev_seq: FT cttggtaaggtcgttgttattc" FT /PCR_primers="fwd_name: Cpc2981F, fwd_seq: FT cgactggagtgtctctaactg, rev_name: Cpc4331R, rev_seq: FT gatggtgattcggaatgac" FT /PCR_primers="fwd_name: Cpc4308F, fwd_seq: FT gcggggtcattcaggatcacc, rev_name: Cpc6021R, rev_seq: FT acaccgcagtgccgtagg" FT /db_xref="taxon:328430" FT CDS 51..863 FT /codon_start=1 FT /product="P0" FT /note="ORF1" FT /db_xref="GOA:R4HG88" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:R4HG88" FT /protein_id="AEI55837.1" FT /translation="MNVLINQYTSTLEINFSPSVSLETRRSLICLFLSSSSKFIQQSNE FT QYGTNSTTCYRSLLLLLPFLFGGFEFLNGQLVIPRLHGSNRLGWYFQRLLSNAGFCTLR FT LQSCRSAQDYPTIQIAPTRVSLYRYIQCPLVEGLSGHQDVLSLGLQYFTKIVGTYVRQL FT KQYNLCLRSEIVMGDSVGLDLDLLGSLLLDGPDHNNTYHAYSGSRIINCLHRCYGKALT FT SDIWELFGVDHCACLQVPSFPLEAEIPEIGSEHDEDSEGEDDEGFWEL" FT CDS join(190..1821,1821..3560) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA dependent RNA polymerase" FT /note="P1-P2; ORF1-ORF2" FT /db_xref="GOA:R4HG69" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:R4HG69" FT /protein_id="AEI55839.1" FT /translation="MALIQQLAIALFCFCSLFYSGASSSLMANWSSPAYTGVTVLGGTS FT SDYYQTLGFAPYVYNPVEVPKTIPQFKLPQPELAYTDIFNVLWLKGYQDTKTCLALVFN FT TSQKSLERMYANLNNITSACALKLSWAIVWVWTWIFWALCSWMVRIITTHIMLIVAVGL FT LIACTVATAKLLHLIFGSFSVWIIVPVYRSLAFLWKLRSPKSVASTMKIVKEKMTKGFG FT SYDMIMSPPKSCVLEMLHDDEQHCGYASCILLADGTVGLLTSYHVIEEAYWVKSHKTGN FT KIKTSDFRPLTQSRNADLTIMVGPPNWQGLLGCSAAQYVTMKNLAAGDARIFYRRDGEW FT YSGVAKLVGPHELNFVNVLSNTEPGFSGTPYFSGNKIVGVHTGGDENENRNYMAAIPHI FT EGLTASKYIYETTAPKGRIFDENLYQELLEEFSSAEVHSIMKHRGFDMECAHKFNGGWV FT WIDCNDDLTLAEIQKLLSSKGKTGYDGVMKIPKSDVYEDKLLNGKNLKGSDTCHIELKE FT ELPRITEETFYDAIDSMELETSKKANLKRGARRRPRKNRRKRLHPKDQERRWRHCPESD FT RSSCRKNECSRIGETSNLQGGSEGAEEYKHPTQEEQKAQRKAWRRDQANSFNYFFASQY FT KWEVPAAPEEVPGFEACGRLPQFYHPKQKQQGRWGEKVVAQHPEMGEKVRGFGWPEFGK FT EAELKSLRLQTARWLKRAESSKIPSTEDRERVIGKTVEAYKNVKSTCPAATRLNELSWE FT QFQKSFQPAVHSLELDAGIGVPYIAYGLPTHRGWVENHERQLLPILAQLTYDRLKKMSQ FT VSFEDLSAEELVQKGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQE FT QNKLEITLWRSIPSKPGMGLSTDAQVTEFMSSLSQHVQVPVEDLVYDWEKHVLPTDCSG FT FDWSVSNWLLQDEMEVRNRLTQNNNDLTKRLRSCWLKCLSNSVLALSDGSLFAQRVSGV FT QKSGSYNTSSTNSRVRVMCAFHAGATWCIAMGDDALESVDTNLEVYKNLGLKVEVSGQL FT EFCSHIFEKPDLAVPVNVGKMLYKLIYGYNPECGSIQVLRNYIDACTSVLNELRHDPEM FT VQLLYSWLLDPVLPQN" FT CDS 190..2283 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:R4HGK2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:R4HGK2" FT /protein_id="AEI55838.1" FT /translation="MALIQQLAIALFCFCSLFYSGASSSLMANWSSPAYTGVTVLGGTS FT SDYYQTLGFAPYVYNPVEVPKTIPQFKLPQPELAYTDIFNVLWLKGYQDTKTCLALVFN FT TSQKSLERMYANLNNITSACALKLSWAIVWVWTWIFWALCSWMVRIITTHIMLIVAVGL FT LIACTVATAKLLHLIFGSFSVWIIVPVYRSLAFLWKLRSPKSVASTMKIVKEKMTKGFG FT SYDMIMSPPKSCVLEMLHDDEQHCGYASCILLADGTVGLLTSYHVIEEAYWVKSHKTGN FT KIKTSDFRPLTQSRNADLTIMVGPPNWQGLLGCSAAQYVTMKNLAAGDARIFYRRDGEW FT YSGVAKLVGPHELNFVNVLSNTEPGFSGTPYFSGNKIVGVHTGGDENENRNYMAAIPHI FT EGLTASKYIYETTAPKGRIFDENLYQELLEEFSSAEVHSIMKHRGFDMECAHKFNGGWV FT WIDCNDDLTLAEIQKLLSSKGKTGYDGVMKIPKSDVYEDKLLNGKNLKGSDTCHIELKE FT ELPRITEETFYDAIDSMELETSKKANLNGERGAVLVKTGEKGFTQKTKNDDGDTVQKVI FT EALVAKMNVQELEKQVISKVAQKVQKNTSTPPKKNRRRRGKRGGEIKQTASTTSSPPST FT NGKYLPPQKRSQGSKPVADSPNSTIQSKNNKVDGVKKSSPNTQKWVKKSEASAGPSSAK FT KLN" FT CDS 3756..5849 FT /codon_start=1 FT /transl_except=(pos:4356..4358,aa:OTHER) FT /product="P3-P5" FT /note="readthrough protein; ORF3-ORF5; expressed as a FT result of translational readthrough by suppression of the FT amber stop codon" FT /db_xref="GOA:R4HG89" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:R4HG89" FT /protein_id="AEI55842.1" FT /translation="MNTVLNRNNGRRRRNRRPVQRARRRNSVVVVETPRQPQRGRRRRR FT NRRRATGRSTAGRRGSSETFVFSKDNLTGSSTGIVTFGPSLSDCPAFSSGILRAYHEYK FT ITMVKLEFISEASSTSSGSIAYELDPHCKLTSLGSYINKFGITKNGQRTFTAKLINGIE FT WHSSDEDQFRILYKGNGGSATAGSFRITIKCQTQNPKXVDDSSPPGPSPDPPPPPPPAP FT SPEPQPCKKFRFWGYEGVPQNKIVTAQNNRNIDVRGLNYVKFFKWEDDNWTEVNLQANY FT NVNNSQYAEPYMIIPASKGKYHVYLECDGQMAVKSVGGKADNSWRGLIAYDTSRRMWSV FT GNYKGCIIENYKKTDSFVLGHPDVELNDCKFDKARGVEADWYASFQLTCDDDDGAWILY FT APPIPKDSLYNYTVSYGEYTENMCEWGAVSISIDEDNSSTGNEVRIKPGRGYEMRRALP FT EGKLEQQPWEDNPVQTNSWKENQSETSSDTDGESFVKAITGKLPITTKLPPKGFLSRLK FT PSEKKDIARSKETNVKEADVGMVVRALGAESQTGIYDDVRERLSNNEMNQNLKELEADL FT QEINRLEPPDELSYQEEVPDVDIWENKDTAVTIAKFDPDPWAHLRKEDPNPPKLKGTLS FT KIGSSISGGSLSGGRLRKTAQQFYEETMKSKMTTVERNQYERILRGRGESVASEYLRSL FT FSK" FT CDS 3756..4358 FT /codon_start=1 FT /product="coat protein" FT /note="P3; ORF3" FT /db_xref="GOA:R4HGB5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:R4HGB5" FT /protein_id="AEI55840.1" FT /translation="MNTVLNRNNGRRRRNRRPVQRARRRNSVVVVETPRQPQRGRRRRR FT NRRRATGRSTAGRRGSSETFVFSKDNLTGSSTGIVTFGPSLSDCPAFSSGILRAYHEYK FT ITMVKLEFISEASSTSSGSIAYELDPHCKLTSLGSYINKFGITKNGQRTFTAKLINGIE FT WHSSDEDQFRILYKGNGGSATAGSFRITIKCQTQNPK" FT CDS 3781..4362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:R4HGI5" FT /protein_id="AEI55841.1" FT /translation="MADEGGIGVLFSGLGAATQWLWSRPLGSHSAEEDEEETVDALQEE FT AQLEDEGQARHSYFRKTTSRAVPQELSRSGRVYQTAQLSALEYLGPTMNIKSQWSSWSS FT SPRPLPPPQGRSLTSLIPTANSLRLGPTSINLESPRMDKGLSQRSLLTESSGTPQMRTN FT SGYYTKETEAPLRRGHSESPSSAKLRIRNR" XX SQ Sequence 6021 BP; 1801 A; 1342 C; 1424 G; 1454 T; 0 other; acaaaagaaa cgtaagggga aaacttaacg ctgagtatct cgcgaagttt atgaacgtgt 60 taatcaatca atacacttca actcttgaga ttaatttctc tccctctgtt tctctcgaaa 120 ccagaagatc tctaatttgc ttatttcttt cctcatcaag caaattcatt caacaatcaa 180 acgagcaata tggcactaat tcaacaactt gctatcgctc tcttctgctt ttgctccctt 240 ttctattcgg gggcttcgag ttccttaatg gccaactggt catcccccgc ttacacggga 300 gtaaccgtct tgggtggtac ttccagcgac tattatcaaa cgctgggttt tgcaccctac 360 gtctacaatc ctgtcgaagt gcccaagact atcccacaat tcaaattgcc ccaaccagag 420 ttagcttata cagatatatt caatgtcctc tggttgaagg gttatcagga caccaagacg 480 tgcttagcct tggtcttcaa tacttcacaa aaatcgttgg aacgtatgta cgccaactta 540 aacaatataa cctctgcttg cgctctgaaa ttgtcatggg cgatagtgtg ggtctggacc 600 tggatctttt gggctctttg ctcttggatg gtccggatca taacaacaca tatcatgctt 660 atagtggcag taggattatt aattgcttgc accgttgcta cggcaaagct cttacatctg 720 atatttggga gcttttcggt gtggatcatt gtgcctgttt acaggtccct agctttcctt 780 tggaagctga gatccccgaa atcggtagcg agcacgatga agatagtgaa ggagaagatg 840 acgaagggtt ttgggagcta tgacatgatt atgtcccccc ctaaaagctg tgtactagaa 900 atgctccacg atgatgaaca acattgtggt tatgcaagtt gcatattgct ggctgatggg 960 acggttggac ttttaacttc gtatcatgtc attgaagagg cttattgggt caaatcccac 1020 aaaactggaa ataaaatcaa aaccagtgat ttcaggcctc tcacccaatc ccgtaatgct 1080 gacttgacta tcatggtggg accccctaac tggcaaggcc tgttgggttg ctctgcagct 1140 caatatgtca cgatgaaaaa tttggccgcc ggtgacgctc gtatctttta ccgtagagat 1200 ggtgaatggt actctggagt ggcaaaacta gtggggcccc atgaattaaa cttcgtcaat 1260 gtcctgtcaa acacagaacc cggtttcagc ggcaccccct acttcagtgg aaacaaaata 1320 gttggagtac acactggggg cgatgagaat gagaatagaa attatatggc cgctatccct 1380 cacatcgaag gtctcacggc gagcaagtac atttatgaaa caactgctcc aaaaggccgg 1440 atttttgatg aaaacctgta ccaggaattg ctggaagaat tttcctctgc tgaagttcac 1500 tcgataatga agcatagagg atttgacatg gaatgcgctc ataaattcaa cggcggttgg 1560 gtatggattg actgtaatga cgatctcacc ctcgctgaaa tacaaaagtt gctttccagc 1620 aaagggaaaa ctgggtatga cggggtcatg aaaattccta agagtgatgt ctatgaggac 1680 aaactgttga atggtaaaaa tctcaaagga agtgacacct gtcatataga attaaaagaa 1740 gagctccccc gaataaccga ggaaaccttt tatgatgcca tcgattcgat ggaattagaa 1800 acctcgaaga aagctaattt aaacggggag cgaggcgccg tcctcgtaaa aaccggagaa 1860 aaaggcttca cccaaaagac caagaacgac gatggagaca ctgtccagaa agtgatagaa 1920 gctcttgtcg caaaaatgaa tgttcaagaa ttggagaaac aagtaatctc caaggtggct 1980 cagaaggtgc agaagaatac aagcacccca cccaagaaga acagaaggcg cagaggaaag 2040 cgtggaggag agatcaagca aacagcttca actacttctt cgcctcccag tacaaatggg 2100 aagtacctgc cgccccagaa gaggtcccag ggttcgaagc ctgtggcaga ctcccccaat 2160 tctaccatcc aaagcaaaaa caacaaggta gatggggtga aaaagtcgtc gcccaacacc 2220 cagaaatggg tgaaaaagtc agaggcttcg gctggcccga gttcggcaaa gaagctgaac 2280 taaaatcctt gcgattgcaa accgcgaggt ggctcaaacg cgctgagtca agtaaaatcc 2340 cgtcaactga ggatagggag cgcgttatcg gtaaaacagt agaggcatac aaaaatgtta 2400 aatcaacttg ccctgctgca acaaggctga acgagctgag ctgggaacaa tttcaaaaat 2460 cctttcagcc agccgttcac tctcttgaac ttgatgctgg aattggcgtt ccatacatag 2520 catatgggct ccccacccat agaggatggg ttgaaaacca cgaacgccag cttctcccca 2580 ttttggctca gctgacctat gaccgactaa agaagatgtc gcaggttagc ttcgaagacc 2640 tgagtgctga ggagttagta cagaagggtc tttgtgaccc catcagagtt tttgtcaagg 2700 gagaaccaca taagcaatcc aagcttgatg aggggcgcta ccgcctcatc atgtcggtta 2760 gccttgtaga ccaattggtg gcccgggtat tgttccaaga acagaacaag ttggagatta 2820 cactctggcg atcaatacca agcaaacccg gaatggggct ttctacggat gctcaagtga 2880 cggagttcat gagttctctg tcccaacatg tgcaagtacc agttgaagac ttggtatatg 2940 actgggaaaa gcatgtgttg cccacagatt gctccggatt cgactggagt gtctctaact 3000 ggctcctcca agatgaaatg gaggttagaa atcgccttac acagaataac aacgacctta 3060 ctaagcgctt gcgtagctgc tggttgaagt gtttatctaa tagtgtattg gcgttgtccg 3120 atggcagcct tttcgcacag cgagtgtcag gagttcagaa gtctggaagc tataatacta 3180 gctcgactaa ctccagagtc cgtgttatgt gcgcatttca tgcaggcgct acatggtgta 3240 tagccatggg agacgacgct ttggagtctg tggacaccaa cctagaggtg tataaaaatc 3300 taggtttaaa agtcgaggtt tcaggacaac tggaattttg ctctcacata tttgagaagc 3360 ctgacctcgc cgttccggtt aacgtgggaa aaatgcttta caaactcatc tacggttaca 3420 acccggaatg tggatccatc caggttctca gaaactacat tgacgcttgc acttcagtgt 3480 taaatgaatt gcgtcatgac cctgagatgg tccagctcct ttactcgtgg ctccttgatc 3540 cagtgttgcc acaaaattaa tcgagtaaga ggagcataca gatagccggt attagttgtt 3600 gcaatagccg gagtctcagt caacaattat agcgaaaatt gattacaaat ttcttgcagg 3660 ttttgccgca ggattcgtaa catcaatccc aatatcagtt tttgctattt acataatcta 3720 ccttaaaatt tccgcccacg taagatcaat tgttaatgaa tacggtctta aataggaata 3780 atggcagacg aaggaggaat aggcgtcctg ttcagcgggc tcggcgccgc aactcagtgg 3840 ttgtggtcga gacccctagg cagccacagc gcggaagaag acgaagaaga aaccgtagac 3900 gcgctacagg aagaagcaca gctggaagac gagggtcaag cgagacattc gtattttcga 3960 aagacaacct cacgggcagt tccacaggaa ttgtcacgtt cgggccgagt ctatcagact 4020 gcccagcttt cagctctgga atacttaggg cctaccatga atataaaatc acaatggtca 4080 agttggagtt catctccgag gcctcttcca cctcctcagg gtcgatcgct tacgagcttg 4140 atccccactg caaactcact tcgcttgggt cctacatcaa taaatttgga atcaccaaga 4200 atggacaaag gactttcaca gcgaagctta ttaacggaat cgagtggcac tcctcagatg 4260 aggaccaatt caggatacta tacaaaggaa acggaggctc cgctacggcg gggtcattcc 4320 gaatcaccat caagtgccaa actcagaatc cgaaataggt agatgacagt tccccccccg 4380 gaccaagtcc agatccacct ccaccccctc ccccggcgcc ttccccagaa ccacaacctt 4440 gtaagaaatt caggttttgg ggttatgaag gcgttccaca aaacaagata gttacggctc 4500 agaacaatag aaatattgat gtccgtggct taaattatgt gaagtttttc aaatgggagg 4560 atgacaattg gacagaagtc aacctacaag ccaattataa tgttaataat tcgcagtacg 4620 ctgaaccgta catgataatc cccgcttcaa aaggcaagta ccacgtctat ctcgagtgtg 4680 atggacagat ggctgtcaaa agtgttggag gaaaagcgga taactcttgg agaggcttga 4740 tagcgtatga cacatctaga agaatgtgga gtgtaggaaa ttataaaggc tgtatcatag 4800 aaaattataa gaaaacagac agctttgtac ttggtcaccc tgacgttgaa ttaaacgatt 4860 gcaagttcga caaagccagg ggagtagaag ctgattggta cgcgtcattc caattaacgt 4920 gtgatgacga tgatggagct tggatcctgt acgccccacc cataccaaag gacagtttgt 4980 acaactacac tgtttcttat ggagagtaca cagaaaatat gtgtgaatgg ggcgccgtat 5040 caatctcgat agatgaagac aatagctcta cagggaacga agtcagaatt aaacccggca 5100 gggggtatga aatgcgccgg gcactgccag aaggaaaact ggaacaacaa ccctgggaag 5160 acaacccagt tcaaacaaat tcctggaagg aaaaccagtc tgaaacctca agcgatacgg 5220 atggtgaatc ttttgtcaaa gcaataactg gcaagttgcc aatcactaca aagctccctc 5280 cgaaaggctt cctctcacgt ctcaaacctt ctgaaaagaa ggatatagcc cgatctaaag 5340 agactaatgt caaagaggct gatgtcggga tggtggttcg cgctttaggt gcagaatccc 5400 aaactggcat atatgatgac gttagagaga gactctcgaa taatgaaatg aatcaaaatc 5460 taaaagagtt agaagctgac ctacaagaga taaatcgctt ggaacccccc gatgagttgt 5520 cttatcaaga ggaggtgcct gatgtcgata tttgggagaa caaagatacg gctgtaacaa 5580 tagctaaatt tgacccagat ccatgggcac atctccgaaa ggaggatccc aatccgccca 5640 aacttaaagg aaccctatcc aaaatagggt cttctataag tggaggatcc ctttccgggg 5700 gacgtctgcg gaaaacagct caacagttct acgaagaaac gatgaaatca aagatgacga 5760 ctgttgaacg aaatcaatat gagcgaattc ttagagggcg tggtgaatct gtagcctcag 5820 aatatctgcg cagtctgttt tccaaatagt ggtatattaa ccgcccactt taaagatacg 5880 gttttcacca aacatgggtg tgttcatgtt tcctagcttc taggaattga agcaagctcg 5940 ggccgcagag tataaatgtc ggaacgacga agcgagagcg agtagcacag tgttacgtgg 6000 gtattctacg cactgccgtg t 6021 //