Dbfetch
ID JF502369; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC JF502369; XX DT 28-FEB-2012 (Rel. 111, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Cotton leaf curl Rajasthan virus isolate In:Bathinda1:2010 segment DNA A, DE complete sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2754 RX PUBMED; 22307170. RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S., RA Anandalakshmi R.; RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) RT in northwestern India"; RL Arch. Virol. 157(5):855-868(2012). XX RN [2] RP 1-2754 RA Katturi P., Naik A.S., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.; RT ; RL Submitted (05-MAR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna - RL Aurangabad road, Jalna, Maharashtra 431 203, India XX DR MD5; caf5d661b506ecb00335ce56b7ddb766. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Cotton leaf curl Rajasthan virus" FT /segment="DNA A" FT /host="cotton" FT /isolate="In:Bathinda1:2010" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="14-Sep-2010" FT /note="PCR_primers=fwd_name: CBVs-C1For-2533-2569, FT rev_name: CBVs-V1Rev-528-494" FT /db_xref="taxon:223259" FT gene 132..488 FT /gene="V2" FT CDS 132..488 FT /codon_start=1 FT /gene="V2" FT /product="pre coat protein" FT /db_xref="GOA:H6B904" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H6B904" FT /protein_id="AFB81529.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKNKGMDKQAYEQ FT KAQDVQDVQKSRCS" FT gene 292..1068 FT /gene="V1" FT CDS 292..1068 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H6B905" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6B905" FT /protein_id="AFB81530.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKTKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENINTKNHTNSVMFFLFRDRTPVDKPQDFGEVFNMFDNES FT ITATVKNVHRDRYQVLLKWNATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTNLY" FT gene complement(1065..1469) FT /gene="C3" FT CDS complement(1065..1469) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:H6B906" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6B906" FT /protein_id="AFB81532.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKFLSNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1162..1614) FT /gene="C2" FT CDS complement(1162..1614) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:A8Y823" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A8Y823" FT /protein_id="AFB81531.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1511..2599) FT /gene="C1" FT CDS complement(1511..2599) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:H6B908" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6B908" FT /protein_id="AFB81533.1" FT /translation="MPPKRNGFYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFSHLVSPSRSAHFHSNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARANRPISLVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SGTNQSTAQGSEEAQQEEESRS" FT gene complement(2143..2445) FT /gene="C4" FT CDS complement(2143..2445) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6B909" FT /protein_id="AFB81534.1" FT /translation="MGLLTCMFSSSSKENSSARICDSPTWYPQAGQHISIQTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEDNKQPMTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2754 BP; 742 A; 548 C; 618 G; 846 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattcaaac aatgtgggat ccactattaa atgaatttcc cgatacggtt cacgggtttc 180 ggtgtatgct ttctgtgaaa tatttgcaac ttttgtcgca ggattattca ccggatacgc 240 ttgggtacga gttaatacgg gatttaattt gtattttacg ctcccgtaat tatgtcgaag 300 cgagctgccg atatcgtcat ttctacgccc gcgtcgaaag tacgccggcg tctgaacttc 360 ggcagcccat acaccagccg tgctgctgcc cccattgtcc gcgtcacaaa aacaaaggca 420 tggacaaaca ggcctatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaat gtgtattagt gatgttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgtcaagtct gtttatgtgt tgggtaagat atggatggat 660 gagaacatta atacgaagaa tcacactaat agtgtgatgt ttttcttgtt tagagatcgt 720 acacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagtcc 780 attacggcga ctgttaagaa tgttcatcgt gataggtatc aagttctgct caaatggaat 840 gcaactgtta ccggtggaca atacgcttca aaggaacagg ctttggtcaa gaagtttgtc 900 agagttaaca attatgttgt ttacaatcaa caggaagcag gaaaatacga gaatcatacg 960 gaaaatgcgt taatgcttta tatggcttgt actcacgcta gcaaccctgt ttatgctacg 1020 ttgaagatta ggatatattt ttatgactct gtaacgaatt tatattaatg aagtttgaat 1080 tttatttctg aatattgatc tacatacata gtttgttgga ttacattgta caatacatgt 1140 tctacagctt taataactaa attaattgaa attacaccga gattgctcag aaatttgagg 1200 acttgggttt tgaataccct taagaaaaga ccagtctgag gctgtaaggt cgtccagatt 1260 cggaatgtta gaaaacactt gtgcagtccc agagctttcc gagtgttgta gttgaactgg 1320 atcctgatcg tgagtatgtc catattcgtc gtgaatggac ggttgacgtg gctgatgatc 1380 ttgaaataaa ggggatttgg aacctcccag atatatgcgc cattccctgc ttgagctgca 1440 gtgatgggtt cccctgtgcg tgaatccatg gttgtggcag ttgattgaca gataataaga 1500 acacccgcat tcaagatcta ctctcctcct cctgttgcgc ctcttcgctt ccctgtgctg 1560 tactttgatt ggtacctgag tacatgggtc tatcaagtgt gatgaagatc gcattcttta 1620 aagcccaatt ttttagtgca gaattcttct cttcatccaa aaactcttta tagcttgaat 1680 tgggtcctgg attgcagagg aagatagtgg gaattccgcc tttaatttga actggcttcc 1740 cgtattttgt atttgattgc cagtcctttt gggcccccat gaactcctta aagtgcttta 1800 ggtaatgcgg gtcgacgtca tcaatgacgt taaaccaggc gtcattactg tatacccttg 1860 ggctcagatc tagatgtcca cacagataat tatgtggacc taatgatctg gcccacatcg 1920 tcttccccgt cctactgtca ccctcaatca ctaaacttat tggtctattg gcccgcgcag 1980 cggcactgac gacgttctcg gcagcccaca cttcaagttc ttctggaact tgatcgaaag 2040 aagaagagga aaaaggagaa acataaggag ctggtggctc ctgaaagatt ctgtctagat 2100 ttgcatttaa attatgaaat tgcagtacaa aatccttagg agctagttcc ttaatgactc 2160 taagagcctc cgacttactt cccgcgttaa gtgctgcggc gtaagcgtca ttggctgttt 2220 gttgtcctcc tcttgctgac cttccgtcga tctgaaattg cccccagtcg agaatgtccc 2280 cgtccttctc gatgtaggat ttgacgtcgg agctggattt agctccctgt atgtttgaat 2340 ggaaatgtgc tgacctgctt ggggatacca agtgggagaa tcgcatattc tggcacttga 2400 attttccttc gaactggatg agaacatgca agtgaggagt cccatcttcg tgaagctctc 2460 tgcagattct aatatatttt tttgaagttg gggtttgtat atttaataat tgggaaagtg 2520 cttcctcttt ggtgagagaa catttgggat aagtgatgaa atagtttttg gaataaaaac 2580 cgttccgctt tggaggcatg ttgactaaaa ttgatcaccg attgaccgct cttgcaactc 2640 tccctggtat atcggtgatc aatatatagt gatcaccaaa tggcataatg gtaataaaaa 2700 aactttaatt tgaaattcaa accaaaaggc taaagcggcc atccgtttaa tatt 2754 //