ID JF502364; SV 1; circular; genomic DNA; STD; VRL; 2751 BP. XX AC JF502364; XX DT 29-FEB-2012 (Rel. 111, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Cotton leaf curl Rajasthan virus isolate In:Abohar5:2010 segment DNA A, DE complete sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2751 RX PUBMED; 22307170. RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S., RA Anandalakshmi R.; RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) RT in northwestern India"; RL Arch. Virol. 157(5):855-868(2012). XX RN [2] RP 1-2751 RA Naik A.S., Katturi P., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.; RT ; RL Submitted (05-MAR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna - RL Aurangabad road, Jalna, Maharashtra 431 203, India XX DR MD5; 0286643bd17478fdd295e3872c4e608d. XX FH Key Location/Qualifiers FH FT source 1..2751 FT /organism="Cotton leaf curl Rajasthan virus" FT /segment="DNA A" FT /host="cotton" FT /isolate="In:Abohar5:2010" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="14-Sep-2010" FT /note="PCR_primers=fwd_name: CBVs-C1For-2533-2569, FT rev_name: CBVs-V1Rev-528-494" FT /db_xref="taxon:223259" FT gene 129..485 FT /gene="V2" FT CDS 129..485 FT /codon_start=1 FT /gene="V2" FT /product="pre coat protein" FT /db_xref="GOA:H6B8X4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H6B8X4" FT /protein_id="AFB83527.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELWQPFPQPCCCPHCPRHKTTGMDKQAYDP FT GAPNVSDVQKSRCS" FT gene 289..1065 FT /gene="V1" FT CDS 289..1065 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H6B8X5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6B8X5" FT /protein_id="AFB83528.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPFPSRAVAPIVRVTKQPGWT FT NRLMTREPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTNLY" FT gene complement(1062..1466) FT /gene="C3" FT CDS complement(1062..1466) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:H6B8X6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6B8X6" FT /protein_id="AFB83531.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNHNPRKALGIHKCFIAFRIWMTSRPPTGRFLRVFRTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1207..1611) FT /gene="C2" FT CDS complement(1207..1611) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:H6B8X7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6B8X7" FT /protein_id="AFB83530.1" FT /translation="MRSSSHLIDPCTQLPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGSSKSPLFQDHQPRQPSIHDEYGYTHDQDPVQSQS FT EESVGDTQMFHSFPNLDDLTASDWSFLKGL" FT gene complement(1508..2596) FT /gene="C1" FT CDS complement(1508..2596) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:H6B8X8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6B8X8" FT /protein_id="AFB83529.1" FT /translation="MPPKRNGFYSKNYFITYPKCSLAKKKTLSQLLNIQTPTSKKSIRI FT CTELHENGTPHLLVLIRFEGKFRCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKFYIE FT KDGDILDWGQFQIDGRSARGGQQTANGAYAAALNGGNKSGALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPLSSSSFDQVPEELEVWAAENVVSAAARPNRPISLVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNQGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SASNQSTAQGSEETQQEEESRS" FT gene complement(2140..2442) FT /gene="C4" FT CDS complement(2140..2442) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6B8X9" FT /protein_id="AFB83532.1" FT /translation="MGLLTCSFSSGSKGNSGARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNSTSRRTGTFSTGGNFRSTEGQQEEGNRQPMALTPQHLTGEISRGLLESLRN" XX SQ Sequence 2751 BP; 731 A; 557 C; 626 G; 837 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattcaaat gtgggatcca ctattaaacg aattccccga tacggttcac gggtttcggt 180 gtatgctttc tgtgaaatat ttgcaacttt tgtcgcagga ttattcaccg gatacgcttg 240 ggtacgagtt aatacgggat ttaatttgta ttttacgctc ccgtaattat gtcgaagcga 300 gctgccgata tcgtcatttc tacgcccgcg tcgaaagtac gccggcgtct gaactttggc 360 agccctttcc ccagccgtgc tgttgccccc attgtccgcg tcacaaaaca accgggatgg 420 acaaacaggc ttatgacccg ggagccccga atgtatcgga tgtacagaag tccagatgtt 480 cctagaggat gtgaaggtcc atgtaaggtt cagtcgtttg agtccagaca tgatattcag 540 catataggta aagtaatgtg tattagtgat gttactcgtg gtactgggct gacccataga 600 gttggtaaga gattttgtgt caagtctgtt tatgtgttgg gtaagatatg gatggatgag 660 aacattaaga cgaagaatca cacgaatagt gtgatgtttt tcttggttag agatcgtaga 720 cctgttgata aacctcaaga ttttggagag gtatttaata tgtttgataa tgagcccagt 780 acggcgactg tgaagaatgt tcatcgtgat aggtatcaag ttctgcgcaa atggtatgca 840 actgtcaccg gtggacaata cgcttcaaag gaacaggctt tggtcaagaa gtttgtcaga 900 gttaacaatt atgttgttta caatcaacag gaagcaggaa aatacgagaa tcatacggaa 960 aatgcgttaa tgctttatat ggcttgtact cacgctagca accctgttta tgctacgttg 1020 aagattagga tatattttta tgactctgta acgaatttat attaatgaag tttgaatttt 1080 atttctgaat attgatctac atacatagtt tgttggatta cattgtacaa tacatgttct 1140 acagctttaa taactaaatt aattgaaatt acaccgagat tgttcagata tttgagcact 1200 tgagtcctaa agacccttaa gaaacgacca gtcggaggcc gtgaggtcat ccagattcgg 1260 aaagctatga aacatttgtg tatccccaac gctttcctcg gattgtgatt gaactggatc 1320 ctgatcgtga gtatatccat attcgtcgtg aatggacggt tgacgtggct gatgatcttg 1380 aaatagaggg gatttggaac ttcccagata tatgcgccat tccctgcttg agctgcagtg 1440 atgggttccc ctgtgcgtga atccatggtt gtggcagttg attgacagat aataagaaca 1500 cccgcattca agatctactc tcctcctcct gttgcgtctc ttcgcttccc tgtgctgtac 1560 tttgattgga agctgagtac atgggtctat caagtgtgat gaagatcgca ttctttaaag 1620 cccaattttt tagtgcagaa ttcttctctt catccaaaaa ctctttatag cttgaattgg 1680 gtccttgatt gcacaggaag attgtgggaa ttccgccttt aatttgaact ggcttcccgt 1740 attttgtatt tgattgccag tccttttggg cccccatgaa ctccttaaag tgctttaggt 1800 aatgcgggtc gacgtcatca atgacgttaa accaggcgtc attactgtat acccttgggc 1860 tcagatctag atgtccacac agataattat gtggacctaa tgatctggcc cacatcgtct 1920 tccccgtcct actgtcaccc tcaatcacta aacttattgg tctattgggc cgcgcagcgg 1980 cactgacgac gttctcggca gcccacactt caagttcttc tggaacttga tcgaaagaag 2040 aagaggataa aggagaaaca taaggagctg gtggctcctg aaagattctg tctagatttg 2100 catttaaatt atgaaattgc agtacaaaat ccttaggagc tagttcctta atgactctaa 2160 gagcccccga cttatttccc ccgttaagtg ctgcggcgta agcgccattg gctgtctgtt 2220 gccctcctct tgctgacctt ccgtcgatct gaaattgccc ccagtcgaga atgtccccgt 2280 ccttctcgat gtagaatttg acgtcggagc tggatttagc tccctgtatg ttcggatgga 2340 aatgtgctga cctgcttggg gagaccaagt cgaagaatcg catattctgg cacctgaatt 2400 tcccttcgaa ccggatgaga acgagcaagt gaggagtccc attttcgtga agctctgtgc 2460 agattctaat agattttttt gaagttgggg tttgtatatt taataattgg gaaagtgttt 2520 tctttttggc gagagaacat ttgggataag tgatgaaata gtttttagaa taaaaaccat 2580 tccgctttgg aggcatgttg aataaaatgg atcagcgatt ggccgctctt gcaactctcc 2640 ctggtatatc ggtgatcaat atatagtgat caccaaatgg cataatggta ataaaaaaac 2700 tttaatttga aattcaaacc aaaagggtaa agcggccatc cgtttaatat t 2751 //