ID JF502363; SV 1; circular; genomic DNA; STD; VRL; 2753 BP. XX AC JF502363; XX DT 28-FEB-2012 (Rel. 111, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Cotton leaf curl Rajasthan virus isolate In:Abohar3:2010 segment DNA A, DE complete sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2753 RX PUBMED; 22307170. RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S., RA Anandalakshmi R.; RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) RT in northwestern India"; RL Arch. Virol. 157(5):855-868(2012). XX RN [2] RP 1-2753 RA Naik A.S., Katturi P., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.; RT ; RL Submitted (05-MAR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna - RL Aurangabad road, Jalna, Maharashtra 431 203, India XX DR MD5; 8813339d43d84121f998c7b7ff8d5677. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Cotton leaf curl Rajasthan virus" FT /segment="DNA A" FT /host="cotton" FT /isolate="In:Abohar3:2010" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="14-Sep-2010" FT /note="PCR_primers=fwd_name: CBVs-C1For-2533-2569, FT rev_name: CBVs-V1Rev-528-494" FT /db_xref="taxon:223259" FT gene 131..487 FT /gene="V2" FT CDS 131..487 FT /codon_start=1 FT /gene="V2" FT /product="pre coat protein" FT /db_xref="GOA:H6B8W8" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:H6B8W8" FT /protein_id="AFB81523.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLFSQDYSPDTFGYDLIRVF FT ICIFRSRNYVEASCRYRHFYARVESTPAFEFRQPFHQPWWCPLCPRHKTTGMDKQAFKQ FT EAQDVQDVQKSRCS" FT gene 291..1067 FT /gene="V1" FT CDS 291..1067 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H6B8W9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6B8W9" FT /protein_id="AFB81524.1" FT /translation="MSKRVADIVISTPASKVRRRLNFGSPFTSRGGAPFVRVTRQQAWT FT NRPLNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTNLY" FT gene complement(1064..1468) FT /gene="C3" FT CDS complement(1064..1468) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:H6B8X0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6B8X0" FT /protein_id="AFB81527.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYPNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1161..1613) FT /gene="C2" FT CDS complement(1161..1613) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:H6B8X1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6B8X1" FT /protein_id="AFB81526.1" FT /translation="MRSSSHLLDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1510..2598) FT /gene="C1" FT CDS complement(1510..2598) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:H6B8X2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6B8X2" FT /protein_id="AFB81525.1" FT /translation="MPPKRNGFYSKNYIITYPKCSLTKEEALSQLLNIQTPPSKKYIKI FT CKKRHENGTPHLHVLIQFEGKFKAQKRGFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARANRPISLVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLVGPMY FT SGTNQSTAQGSEEAQQEEESRS" FT gene complement(2142..2444) FT /gene="C4" FT CDS complement(2142..2444) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6B8X3" FT /protein_id="AFB81528.1" FT /translation="MGLLTCMFSSSSKENSRPKKGDSSTWSRQAGQHIFIQTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEDNKQPMTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2753 BP; 723 A; 549 C; 629 G; 852 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaat aacgctcccg cacgctataa gtacttgcgc actaagtttc 120 aaattcaaac atgtgggatc cactattaaa cgaattcccg gatacggttc acgggtttcg 180 gtgtatgctt tctgtgaaat atttgcaact tttttcgcag gattattcac cggatacctt 240 tgggtacgat ttaatccggg ttttcatttg tattttccgc tcccgtaatt atgtcgaagc 300 gagttgccga tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ttgaatttcg 360 gcagcccttt caccagccgt ggtggtgccc cctttgtccg cgtcacaaga caacaggcat 420 ggacaaacag gcctttaaac aggaagccca ggatgtacag gatgtacaga agtccagatg 480 ttcctagagg atgtgaaggt ccatgtaagg ttcagtcgtt tgagtccaga catgatattc 540 agcatatagg taaagtaatg tgtattagtg atgttactcg tggtactggg ctgacccata 600 gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata tggatggatg 660 agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta 720 gacctgttga taaacctcaa gattttggag aggtatttaa tatgtttgat aatgagccca 780 gtacggcgac tgtgaagaat gttcatcgtg ataggtatca agttctgcgc aaatggtatg 840 caactgtcac cggtggacaa tacgcttcaa aggaacaggc tttggtcaag aagtttgtca 900 gagttaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg 960 aaaatgcgtt aatgctttat atggcttgta ctcacgctag caaccctgtt tatgctacgt 1020 tgaagattag gatatatttt tatgactctg taacgaattt atattaatga agtttgaatt 1080 ttatttctga atattgatct acatacatag tttgttggat tacattgtac aatacatgtt 1140 ctacagcttt aataactaaa ttaattgaaa ttacaccgag attgttcgga tatttgagga 1200 cttgggtttt gaataccctt aagaaaagac cagtctgagg ctgtaaggtc gtccagattc 1260 ggaatgttag aaaacacttg tgcagtccca gagctttccg agtgttgtag ttgaactgga 1320 tcctgatcgt gagtatgtcc atattcgtcg tgaatggacg gttgacgtgg ctgatgatct 1380 tgaaataaag gggatttgga acctcccaga tatatgcgcc attccctgct tgagctgcag 1440 tgatgggttc ccctgtgcgt gaatccatgg ttgtggcagt tgattgacag ataataagaa 1500 cacccgcatt caagatctac tctcctcctc ctgttgcgcc tcttcgcttc cctgtgctgt 1560 actttgattg gtacctgagt acatgggtcc aacaagtgtg atgaagatcg cattctttaa 1620 agcccaattt tttagtgcag aattcttctc ttcatccaaa aactctttat agcttgaatt 1680 gggtcctgga ttgcagagga agatagtggg aattccgcct ttaatttgaa ctggcttccc 1740 gtattttgta tttgattgcc agtccttttg ggcccccatg aactccttaa agtgctttag 1800 gtaatgcggg tcgacgtcat caatgacgtt aaaccaggcg tcattactgt atacccttgg 1860 gctcagatct agatgtccac acagataatt atgtggacct aatgatctgg cccacatcgt 1920 cttccccgtc ctactgtcac cctcaatcac taaacttatt ggtctattgg cccgcgcagc 1980 ggcactgacg acgttctcgg cagcccacac ttcaagttct tctggaactt gatcgaaaga 2040 agaagaggaa aaaggagaaa cataaggagc tggtggctcc tgaaagattc tgtctagatt 2100 tgcatttaaa ttatgaaatt gcagtacaaa atccttagga gctagttcct taatgactct 2160 aagagcctcc gacttacttc ccgcgttaag tgctgcggcg taagcgtcat tggctgtttg 2220 ttgtcctcct cttgctgacc ttccgtcgat ctgaaattgc ccccagtcga gaatgtcccc 2280 gtccttctcg atgtaggatt tgacgtcgga gctggattta gctccctgta tgtttggatg 2340 aaaatgtgct gacctgcttg gcgagaccaa gtcgaagaat cccctttttt gggccttgaa 2400 ttttccttcg aactggatga gaacatgcaa gtgaggagtc ccattttcgt gacgcttttt 2460 gcagatttta atatattttt ttgaaggtgg ggtttgtata tttaataatt gggaaagtgc 2520 ttcctctttg gtgagagaac atttgggata agtgatgata tagtttttgg aataaaaacc 2580 gttccgcttt ggaggcatgt tgactaaaat tgatcacgga ttggccgctc ttgcaactct 2640 ccccggtata tcggtgatca atatatagtg atcaccaaat ggcataatgg taataaaaaa 2700 actttaattt gaaattcaaa ccaaaaggct aaagcggcca tccgtttaat att 2753 //