ID JF502362; SV 1; circular; genomic DNA; STD; VRL; 2753 BP. XX AC JF502362; XX DT 28-FEB-2012 (Rel. 111, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Cotton leaf curl Rajasthan virus isolate In:Abohar2:2010 segment DNA A, DE complete sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2753 RX PUBMED; 22307170. RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S., RA Anandalakshmi R.; RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) RT in northwestern India"; RL Arch. Virol. 157(5):855-868(2012). XX RN [2] RP 1-2753 RA Naik A.S., Katturi P., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.; RT ; RL Submitted (05-MAR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna - RL Aurangabad road, Jalna, Maharashtra 431 203, India XX DR MD5; 3fb13ee7eaee99f3844e7552790451be. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Cotton leaf curl Rajasthan virus" FT /segment="DNA A" FT /host="cotton" FT /isolate="In:Abohar2:2010" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="14-Sep-2010" FT /note="PCR_primers=fwd_name: CBVs-C1For-2533-2569, FT rev_name: CBVs-V1Rev-528-494" FT /db_xref="taxon:223259" FT gene 131..487 FT /gene="V2" FT CDS 131..487 FT /codon_start=1 FT /gene="V2" FT /product="pre coat protein" FT /db_xref="GOA:H6B8W2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H6B8W2" FT /protein_id="AFB81517.1" FT /translation="MWDPLVNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTPGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPFHQPCCCPHCPRHTKTGMDKQAYEQ FT EAQDVQDVQKSRCS" FT gene 291..1067 FT /gene="V1" FT CDS 291..1067 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H6B8W3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6B8W3" FT /protein_id="AFB81518.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPFTNRVAAPIARVTQKQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTNLY" FT gene complement(1064..1468) FT /gene="C3" FT CDS complement(1064..1468) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:A8Y822" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A8Y822" FT /protein_id="AFB81521.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1161..1613) FT /gene="C2" FT CDS complement(1161..1613) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:H6B8W5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6B8W5" FT /protein_id="AFB81520.1" FT /translation="MRSSSHLIDPCSQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQIFEQSRCNFN" FT gene complement(1510..2598) FT /gene="C1" FT CDS complement(1510..2598) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:H6B8W6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6B8W6" FT /protein_id="AFB81519.1" FT /translation="MPPKRNGFYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALKGGNKSEALRVIKELAPKDFVLQFHN FT LNENLERIFQGPPAPYGSLFSSSFFEQIQKKLEGGVAENVVSAVGRPIRPISLVVEGDS FT RTGKTMWARSLGPHNYLGGHLDLSPRVYSNDAWFNLFDDADPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMF FT SGTNQSTAQGSEEAQQEEESRS" FT gene complement(2142..2444) FT /gene="C4" FT CDS complement(2142..2444) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6B8W7" FT /protein_id="AFB81522.1" FT /translation="MGLLTCMFSSSSKENSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLRGEISRRLLESLRN" XX SQ Sequence 2753 BP; 733 A; 558 C; 621 G; 841 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgtctccctc aaagttagat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattgaaac atgtgggatc cactagtaaa cgaattcccg gatacggtgc acgggtttcg 180 ttgtatgcta tctgtcaaat atttgcaact tttgtcgcag gattattcac cggatacccc 240 tggttacgag ttaatacggg atttaatttg tattttacgt tcccgtaatt atgtcgaagc 300 gagctgcaga tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg 360 gcagcccttt caccaaccgt gttgctgccc ccattgcccg cgtcacacaa aaacaggcat 420 ggacaaacag gcctatgaac aggaagccca ggatgtacag gatgtacaga agtccagatg 480 ttcctagagg atgtgaaggt ccatgtaagg ttcagtcgtt tgagtccaga catgatattc 540 agcatatagg taaagtaatg tgtattagtg atgttactcg tggtactggg ctgacccata 600 gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata tggatggatg 660 agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta 720 gacctgttga taaacctcaa gattttggag aggtatttaa tatgtttgat aatgagccca 780 gtacggcgac tgtgaagaat gttcatcgtg ataggtatca agttctgcgc aaatggtatg 840 caactgtcac cggtggacaa tacgcttcaa aggaacaggc tttggtcaag aagtttgtca 900 gagttaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg 960 aaaatgcgtt aatgctttat atggcttgta ctcacgctag caaccctgtt tatgctacgt 1020 tgaagattag gatatatttt tatgactctg taacgaattt atattaatga agtttgaatt 1080 ttatttctga atattgatct acatacatag tttgttggat tacattgtac aatacatgtt 1140 ctacagcttt aataactaaa ttaattgaaa ttacaccgag attgttcaaa tatttgagga 1200 cttgggtttt gaataccctt aagaaaagac cagtctgagg ctgtaaggtc gtccagattc 1260 ggaatgttag aaaacacttg tgcagtccca gagctttccg agtgttgtag ttgaactgga 1320 tcctgatcgt gagtatgtcc atattcgtcg tgaatggacg gttgacgtgg ctgatgatct 1380 tgaaataaag gggatttgga acctcccaga tatatgcgcc attccctgct tgagctgcag 1440 tgatgggttc ccctgtgcgt gaatccatgg ttgtggcagt tgattgacag ataataagaa 1500 cacccgcatt caagatctac tctcctcctc ctgttgcgcc tcttcgcttc cctgtgctgt 1560 actttgattg gtacctgaga acatgggtct atcaagtgtg atgaagatcg cattctttaa 1620 agcccaattt tttagtgcag aattcttctc ttcatccaaa aactctttat agcttgaatt 1680 gggtcctgga ttgcagagga agatagtggg aattccgcct ttaatttgaa ctggcttccc 1740 gtattttgta tttgattgcc agtccttttg ggcccccatg aactccttaa agtgctttag 1800 gtaatgcggg tcggcgtcat caaagaggtt aaaccaggcg tcattactgt atacccttgg 1860 gctcaaatct aaatgtcccc ccagataatt atgtgggcct aatgatctgg cccacatcgt 1920 cttccccgtc ctactgtccc cctccaccac taaacttatt ggtctaatgg gccgcccaac 1980 ggcactgacg acgttttcgg caaccccccc ttcaagtttt ttttggattt gttcgaaaaa 2040 agaagaggaa aaaagggaac cataaggagc tgggggcccc tgaaagattc tttctagatt 2100 ttcatttaaa ttatggaatt gcagtacaaa atccttagga gctagttcct taatgactct 2160 aagagcctcc gacttatttc cccccttaag tgctgcggcg taagcgtcat tggctgtctg 2220 ttgccctcct cttgctgacc ttccgtcgat ctgaaattgc ccccagtcga gaatgtcccc 2280 gtccttctcg atgtaggatt tgacgtcgga gctggattta gctccctgta tgttcggatg 2340 gaaatgtgct gacctgcttg gggagaccaa gtcgaagaat cgcatattct ggcacttgaa 2400 ttttccttcg aactggatga gaacatgcaa gtgaggagtc ccatcttcgt gaagctctct 2460 gcagattcta atatattttt ttgaagttgg ggtttgtata tttaataatt gggaaagtgc 2520 ttcctctttg gtgagagaac atttgggata agtgatgaaa tagtttttgg aataaaaacc 2580 gttccgcttt ggaggcatgt tgactaaaat tgatcaccga ttgaccgctc ttgcaactct 2640 ccctggtata tcggtgatca atatatagtg atcaccaaat ggcataatgg taataaaaaa 2700 actttaattt gaaattcaaa ccaaaaggct aaagcggcca tccgtttaat att 2753 //