ID JF502361; SV 1; circular; genomic DNA; STD; VRL; 2753 BP. XX AC JF502361; XX DT 28-FEB-2012 (Rel. 111, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Cotton leaf curl Rajasthan virus isolate In:Abohar1:2010 segment DNA A, DE complete sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2753 RX PUBMED; 22307170. RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S., RA Anandalakshmi R.; RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) RT in northwestern India"; RL Arch. Virol. 157(5):855-868(2012). XX RN [2] RP 1-2753 RA Katturi P., Naik A.S., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.; RT ; RL Submitted (05-MAR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna - RL Aurangabad road, Jalna, Maharashtra 431 203, India XX DR MD5; cabef718c7d8a1ad7000f1b660bdd973. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Cotton leaf curl Rajasthan virus" FT /segment="DNA A" FT /host="cotton" FT /isolate="In:Abohar1:2010" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="14-Sep-2010" FT /note="PCR_primers=fwd_name: CBVs-C1For-2533-2569, FT rev_name: CBVs-V1Rev-528-494" FT /db_xref="taxon:223259" FT gene 131..487 FT /gene="V2" FT CDS 131..487 FT /codon_start=1 FT /gene="V2" FT /product="pre coat protein" FT /db_xref="GOA:H6B8V6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H6B8V6" FT /protein_id="AFB81511.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYCHFYPRVETTPAFELRQPIHQPCCGSHCPRHKKTRMDKQAYRQ FT EAQDVHDVQKSRCS" FT gene 291..1067 FT /gene="V1" FT CDS 291..1067 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H6B8V7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6B8V7" FT /protein_id="AFB81512.1" FT /translation="MSKRAADIVISTPASRLPRRLNFGSPFTNRAVAPIVHVTKKHAWT FT NKPIDRKHRMYTMYRSPDVPRRCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STAAVKNIHRDRYQVLRKWYATVTGRQYASKEQALAKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTNLY" FT gene complement(1064..1468) FT /gene="C3" FT CDS complement(1064..1468) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:H6B8V8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6B8V8" FT /protein_id="AFB81515.1" FT /translation="MDSRIGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLQFLNNLGVISINL FT GIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1161..1613) FT /gene="C2" FT CDS complement(1161..1613) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:H6B8V9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6B8V9" FT /protein_id="AFB81514.1" FT /translation="MRSSSHLIDPCTRVPIKVQHREAKRRSRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPYLDDLTASDWSFLKGIQNPSPPISEQSRCNFN" FT gene complement(1510..2598) FT /gene="C1" FT CDS complement(1510..2598) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:H6B8W0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6B8W0" FT /protein_id="AFB81513.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGHHTANDACAAALNAGNKSGALKVIKGLALKVFVLQFYN FT LNANIDRIFQEPPAPYVSPFSSFFFDQFTERLEIWATENVVSAVQRPIRPISIVIDGAS FT RTGKTMWARSLGPHNYMGGHLEMSPMIYSNEAWFNVIDDVAPHYPKHFKEFKGAQREWQ FT SNTKSGKPVKIKGGIPTIFLCNQGPSSSYKEFFAEEKNSALKKWALKNAIFITLDRPMY FT SGTNQSTAQGSEEAEQEEESRS" FT gene complement(2142..2444) FT /gene="C4" FT CDS complement(2142..2444) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6B8W1" FT /protein_id="AFB81516.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEDQQEEGTTQPMTLAQQHLTREISRGLLKSLRD" XX SQ Sequence 2753 BP; 746 A; 552 C; 613 G; 842 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattcaaac atgtgggatc cactattaaa cgaattccct gatacggttc acgggtttcg 180 gtgtatgctt tctgtgaaat atttgcaact tttgtcgcag gattattcac cggatacgct 240 tgggtacgag ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc 300 gagctgccga tattgtcatt tctacccccg cgtcgagact accccggcgt ttgaacttcg 360 gcagcccatt caccaaccgt gctgtggctc ccattgtcca cgtcacaaaa aaacacgcat 420 ggacaaacaa gcctatcgac aggaagcaca ggatgtacac gatgtacaga agtccagatg 480 ttcctaggag atgtgaaggt ccatgtaagg ttcagtcgtt tgagtccaga catgatattc 540 agcatatagg taaagtaatg tgtattagtg atgttactcg tggtactggg ctgacccata 600 gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata tggatggatg 660 agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta 720 gacctgttga taaacctcaa gattttggag aggtatttaa tatgtttgat aatgaaccca 780 gtacggcggc tgtgaagaat attcatcgtg ataggtatca agttctgcgc aaatggtatg 840 caactgtcac cggtagacaa tacgcttcaa aggaacaggc tttggccaag aagtttgtca 900 gagttaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg 960 aaaatgcgtt aatgctttat atggcttgta ctcacgctag caaccctgtt tatgctacgt 1020 tgaagattag gatatatttt tatgactctg taacgaattt atattaatga agtttgaatt 1080 ttatttctga atattgatct acatacatag tttgttggat tacattgtac aatacatgtt 1140 ctacagcttt aatacctaaa ttaattgaaa ttacaccgag attgttcaga aattggagga 1200 cttgggtttt gaataccctt aagaaaagac cagtctgagg ctgtaaggtc gtccagatac 1260 ggaatgttag aaaacacttg tgcagtccca gagctttccg agtgttgtag ttgaactgga 1320 tcctgatcgt gagtatgtcc atattcgtcg tgaatggacg gttgacgtgg ctgatgatct 1380 tgaaataaag gggatttgga acctcccaga tatatgcgcc attccctgct tgagctgcag 1440 tgatgggttc ccctatgcgt gaatccatgg ttgtggcagt tgattgacag ataataagaa 1500 cacccgcatt caagatctac tctcctcctc ctgctccgcc tcttcgcttc cctgtgctgt 1560 actttgattg gtacccgagt acatgggtct atcaagtgtg atgaagatcg cattctttaa 1620 agcccacttt tttagtgctg aattcttctc ttctgcaaaa aactctttat agcttgagga 1680 ggggccttga ttgcagagga agatagtggg aatcccgcct ttaattttaa ctggcttccc 1740 ggattttgta tttgattgcc actctctttg ggcccccttg aactccttaa agtgttttgg 1800 gtaatgcggg gcgacgtcat ctattacgtt aaaccaggct tcattactgt aaatcattgg 1860 gctcatttct agatgtccac ccatataatt atgtggacct aatgatctgg cccacatcgt 1920 cttccccgtc ctactggcac cgtcaatcac tatacttata ggtctaatgg gacgctgaac 1980 ggcactgacg acgttctcgg tagcccaaat ttcaagtctt tctgtaaatt gatcaaaaaa 2040 aaatgaggaa aaaggagaaa catatggagc tggtggctcc tgaaagattc tgtctatatt 2100 tgcatttaaa ttataaaatt gcagtacaaa aaccttaaga gctagtccct taatgacttt 2160 aagagccccc gacttatttc ccgcgttaag tgctgctgcg caagcgtcat tggctgtgtg 2220 gtgccctcct cttgctgatc ttccgtcgat ctgaaattgc ccccagtcga gaatgtcccc 2280 gtccttctcg atgtaggatt tgacgtcgga gctggattta gctccctgta tgttcggatg 2340 gaaatgtgct gacctgcttg gggagaccaa gtcgaagaat cgcatattct ggcacttgaa 2400 tttcccttcg aactggatga gaacatgcaa gtgaggagtc ccatcttcgt gaagctctct 2460 gcagattcta atatattttt ttgaagttgg ggtttgtata tttaataatt gggaaagtgc 2520 ttcctctttg gtgagagaac atttgggata agtgatgaaa tagtttttgg aataaatacc 2580 gttccgcttt ggaggcatgt tgactaaaat tgatcaccga ttgaccgctc ttgcaactct 2640 ccccggtata tcggtgatca atatatagtg atcaccaaat ggcataatgg taataaaaaa 2700 actttaattt gaaattcaaa ccaaaaggct aaagcggcca tccgtttaat att 2753 //