ID JF502359; SV 1; circular; genomic DNA; STD; VRL; 2735 BP. XX AC JF502359; XX DT 28-FEB-2012 (Rel. 111, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Cotton leaf curl Rajasthan virus isolate In:SriGanganagar:2005 segment DNA DE A, complete sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2735 RX PUBMED; 22307170. RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S., RA Anandalakshmi R.; RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) RT in northwestern India"; RL Arch. Virol. 157(5):855-868(2012). XX RN [2] RP 1-2735 RA Katturi P., Naik A.S., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.; RT ; RL Submitted (05-MAR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna - RL Aurangabad road, Jalna, Maharashtra 431 203, India XX DR MD5; 2c09a3f0f8fb7f13db953b8fc20815b3. DR EuropePMC; PMC5727119; 29234082. XX FH Key Location/Qualifiers FH FT source 1..2735 FT /organism="Cotton leaf curl Rajasthan virus" FT /segment="DNA A" FT /host="cotton" FT /isolate="In:SriGanganagar:2005" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="20-Nov-2005" FT /note="PCR_primers=fwd_name: CBVs-C1For-2533-2569, FT rev_name: CBVs-V1Rev-528-494" FT /db_xref="taxon:223259" FT gene 116..481 FT /gene="V2" FT CDS 116..481 FT /codon_start=1 FT /gene="V2" FT /product="pre coat protein" FT /db_xref="GOA:H6B8U4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H6B8U4" FT /protein_id="AFB81505.1" FT /translation="MWDPLLNEFPDTVHGFRCLLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRYSNYVEASCRYRHFYALWGTPPASVLRQPIHPPCCCPHCPRHNTPGMDKQAYEQ FT EAQSILDVQKSGCSKGL" FT gene 276..1046 FT /gene="V1" FT CDS 276..1046 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H6B8U5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6B8U5" FT /protein_id="AFB81506.1" FT /translation="MSKRAADIVISTPCGAPPRHLCFGSPSTRRAAAPIVPVTTHQAWT FT SRPMNRKPRVYWMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKIHTNSVMFFLVRDRSPVDQPRNFGEVFYMFDNEP FT STATVKYSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYAALKIRIYFYDSVTN" FT gene complement(1049..1453) FT /gene="C3" FT CDS complement(1049..1453) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:H6B8U6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6B8U6" FT /protein_id="AFB81509.1" FT /translation="MDSRTGEPIILAQARNGAYISEVPNPLYSKDISHVNRPFTTDMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1146..1598) FT /gene="C2" FT CDS complement(1146..1598) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:H6B8U7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6B8U7" FT /protein_id="AFB81508.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGFSYYLSIN FT CHNHGFTHRGTHHSSSSTEWRIYLGGAKSPLFQGYQPRQPSIHDGYGHTHDQDPVQLQH FT SESFGTAQVFSNLPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1495..2580) FT /gene="C1" FT CDS complement(1495..2580) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:H6B8U8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6B8U8" FT /protein_id="AFB81507.1" FT /translation="MPPKRNGFYSKNYFSTYPKCSLTKEEALSQLLNIQTPTSKKYIRS FT GRELHEDGTPHLDVLIQLEGKFKCQNRRYFDWVSPSRSAHFHPNIQGAKSSSDVNFYIE FT KDGDILDWGQFQIEGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPNDLMRQFHN FT LNANLDRIFQEPPAPYISPFFSSSFDQVPEELEEFVSENVVDAAARPNRPHSIVIEGNS FT RPGKTMWARSLGPHNYLCGHLDLSPKFYSNDAWYNVIDVDPHFLKHFKEFMGAQRDWRS FT NTKYGKPVQIKGGIPTIFLCNPGPNRSYKEFLDEEKNSALKNWAVKNAIFITLDRPLYS FT GTNQSTAQGSEEAQQEEESRS" FT gene complement(2124..2426) FT /gene="C4" FT CDS complement(2124..2426) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6B8U9" FT /protein_id="AFB81510.1" FT /translation="MGLLTWMFSSSWKGNSSARIGGTSTGSPQAGQHISIRTFRELNPA FT PTSIFTSRRTGTFSTGGNFRSREGQQEEGNRQPMTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2735 BP; 702 A; 553 C; 638 G; 842 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cccgggttta tgaggtgggt gcctcgaggg 60 ggaataaggc tcccgcacac tataattttt ttttttataa gtttcaaatt caaacatgtg 120 ggatccacta ttaaacgaat tccctgatac ggttcatggg tttcgctgtc tgctctctgt 180 gaaatatttg caacttttgt cgcaggatta ttcaccggat acgcttgggt acgagttaat 240 acgggattta atttgtattt tacggtacag taattatgtc gaagcgagct gccgatatcg 300 tcatttctac gccctgtggg gcaccccccc ggcatctgtg cttcggcagc ccatccaccc 360 gccgtgctgc tgcccccatt gtccccgtca caacacacca ggcatggaca agcaggccta 420 tgaacaggaa gcccagagta tactggatgt acagaagtcc ggatgttcca aagggttgtg 480 aaggcccatg taaggtacaa tcttttgagt cgagacatga tgtcgttcat attggtaagg 540 taatgtgtat ttctgatgtt actcgtggtg tcggtttgac ccatcgtatt ggtaaacgtt 600 tttgtgtcaa gtcagtttat gttttaggta agatatggat ggatgaaaat ataaagacca 660 agattcacac gaattcggtg atgttctttt tagtccgcga tcgaagtcct gttgaccaac 720 ctcggaattt tggtgaggta ttttatatgt ttgacaatga acccagtaca gcgactgtga 780 aatatagtca tagggaccgt taccaggtgt tgaggaaatg gcatgcaacc gttacgggtg 840 gtcaatatgc atcgaaagaa caggctttgg tcaagaagtt tgtcagagtt aacaattatg 900 ttgtttacaa tcaacaggaa gcaggaaaat acgagaatca tacggaaaat gcgttaatgc 960 tttatatggc ttgtactcac gctagcaacc ctgtttatgc tgcgttgaag attaggatat 1020 atttttatga ctctgtaacg aattgatatt aatgaagttt gaattttatt tctgaatatt 1080 gatctacata catagtttgt tggattacat tgtacaatac atgttctaca gctttaataa 1140 ctaaattaat tgaaattaca ccgagattgt tcagatattt gaggacttgg gttttgaata 1200 cccttaagaa aagaccagtc tgaggctgta aggtcgtcca gattcggaag gttagaaaac 1260 acttgtgcag tcccaaagct ttccgagtgt tgtagttgaa ctggatcctg atcgtgagta 1320 tgtccatatc cgtcgtgaat ggacggttga cgtggctgat atccttggaa taaaggggat 1380 ttggcacctc cgagatatat gcgccattcc gtgcttgagc tagaatgatg ggttcccctg 1440 tgcgtgaatc catggttgtg gcagttgatt gacagataat aagaaaaccc gcattcaaga 1500 tctactctcc tcctcctgtt gcgcctcttc gcttccctgt gctgtacttt gattggtacc 1560 tgagtacagg ggtctatcaa gtgtgatgaa gatcgcattc tttactgccc agttttttag 1620 tgcggagttc ttttcctcgt ctaggaattc tttataactg cggtttggac caggattgca 1680 gaggaagatt gttggtatcc cgcctttaat ttgaactggc ttcccgtact ttgtgttgga 1740 tcgccagtcc ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat gcgggtcgac 1800 atcaatgaca ttataccagg cgtcgttact gtagaacttg ggactcaggt ccagatgtcc 1860 acacaaatag ttatgtggac ccaatgacct agcccacatc gtcttccccg gacgactatt 1920 tccttcaatc actatactat gaggtctgtt tggccgcgca gcggcatcga caacgttttc 1980 ggagacaaat tcttcaagtt cttctggaac ttgatcgaaa gaagaagaaa aaaaaggaga 2040 aatataggga gccggtggct cctgaaagat tctgtctaga tttgcattta aattatgaaa 2100 ttgtctcatc aaatcattag gagctagttc cttaatgact ctaagagcct ctgacttact 2160 gcctgcgtta agtgctgcgg cgtaagcgtc attggctgtc tgttgccctc ctcttgctga 2220 ccttccctcg atctgaaatt gcccccagtc gagaatgtcc ccgtccttct cgatgtaaaa 2280 attgacgtcg gagctggatt tagctccctg aatgttcgga tggaaatgtg ctgacctgct 2340 tggggagacc cagtcgaagt accgcctatt ctggcacttg aatttccctt ccaactggat 2400 gagaacatcc aagtgaggag tcccatcttc gtgaagctct ctgccgcttc taatatattt 2460 ttttgaagtt ggggtttgta tatttaataa ttgggaaagt gcttcctctt tggtgagaga 2520 acatttggga taagtggaga aatagttttt ggaataaaaa ccgttccgct ttggaggcat 2580 gttgactaaa attgatcacc gattgaccgc tcttgcaact ctccctggta tatcggtgat 2640 caatatattg tgttctccaa atggcataat ggtaataaaa aaactttaat ttgaaattca 2700 aaccaaaagg ctaaagcggc cacttcttta atatt 2735 //