Dbfetch
ID JF502353; SV 1; circular; genomic DNA; STD; VRL; 2751 BP. XX AC JF502353; XX DT 29-FEB-2012 (Rel. 111, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Cotton leaf curl Burewala virus isolate In:Fazilka:2004 segment DNA A, DE complete sequence. XX KW . XX OS Cotton leaf curl Burewala virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2751 RX PUBMED; 22307170. RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S., RA Anandalakshmi R.; RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) RT in northwestern India"; RL Arch. Virol. 157(5):855-868(2012). XX RN [2] RP 1-2751 RA Naik A.S., Katturi P., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.; RT ; RL Submitted (05-MAR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna - RL Aurangabad road, Jalna, Maharashtra 431 203, India XX DR MD5; 1734ccb8e72d69f694fbe8eaed952244. XX FH Key Location/Qualifiers FH FT source 1..2751 FT /organism="Cotton leaf curl Burewala virus" FT /segment="DNA A" FT /host="cotton" FT /isolate="In:Fazilka:2004" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="01-Sep-2004" FT /note="PCR_primers=fwd_name: CBVs-C1For_2533-2569, FT rev_name: CBVs-V1Rev_528-494" FT /db_xref="taxon:620894" FT gene 132..488 FT /gene="V2" FT CDS 132..488 FT /codon_start=1 FT /gene="V2" FT /product="pre coat protein" FT /db_xref="GOA:D3HIQ8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3HIQ8" FT /protein_id="AFB83416.1" FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT gene complement(283..807) FT /gene="C5" FT CDS complement(283..807) FT /codon_start=1 FT /gene="C5" FT /product="C5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:H6B8Q7" FT /protein_id="AFB83418.1" FT /translation="MNILHSRRTGLIIKHIKYLSKILRFINRSTISDQEKHHTIRVILR FT LNVLIHPDLTQHINRLNTKSLTNSMGQPSTTSNITNTHYFTYMLNIMSGLKRLNLTWTF FT TSSRNIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVETAAYLRSGRGN FT DYICWSLRHNS" FT gene 292..1062 FT /gene="V1" FT CDS 292..1062 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:D3HIR0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D3HIR0" FT /protein_id="AFB83417.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1059..1463) FT /gene="C3" FT CDS complement(1059..1463) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:H6B8Q9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6B8Q9" FT /protein_id="AFB83421.1" FT /translation="MDSRTGEPITAAQAANGAYIWEVPNPLYFKIISNVNRPFTTNMDI FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFVNQSSSIKFNIY" FT gene complement(1204..1608) FT /gene="C2" FT CDS complement(1204..1608) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:H6B8R0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6B8R0" FT /protein_id="AFB83420.1" FT /translation="MQSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDMNEGFSYYLSIN FT CHNHGFTHRGTHHCSSSSEWRIYLGSSKSPLFQDHQQRQPSIHDEYGYTHDQDPVQSQP FT EESVGDTQMFHSFPNLDDLTASDWSFLKGL" FT gene complement(1502..2596) FT /gene="C1" FT CDS complement(1502..2596) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:H6B8R1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6B8R1" FT /protein_id="AFB83419.1" FT /translation="MAPPKRFKVQAILYVITYPQCSLTKEEALSQIQAINTPSKKKYIK FT LCRELHEDGSPHLPVLIRFEGKFVCTNNKFFDLVSPNRAAHFHPNIQGAKSSSDVKAYI FT NKDGDAFEWGEFQIDGRSPRGGQQTANGAYAAALNAGSKSEALRVLKELAPKIFGLQFH FT NLNANLTRIFREAPAPYIFPFSPSSFDQVPEELGIWAIDNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGTNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL FT YSASNQSTAQGSEETQQEEESRYE" FT gene complement(2242..2682) FT /gene="C4" FT CDS complement(2242..2682) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6B8R2" FT /protein_id="AFB83422.1" FT /translation="MAPLDTINCIQSPINREKGHQLSLIDQSQWLPPNVLKYKLSFTSS FT LIHSAHSLKRKHFPKFKPSTHPRKKNTSNSAESYTKMGALISLCSSGSRANSSAQITNS FT STWFPPTGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFR" XX SQ Sequence 2751 BP; 710 A; 546 C; 650 G; 845 T; 0 other; accggagggc cgcccgtttt ttttgtgggc ccttccatta actcttgtcg ggcaatcata 60 tgacgcgttc aaagcttaaa taattctccc gcttatttta agtacttcgt tgctaagttt 120 gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtttta 180 ggtgtatgtt agcagttaaa tatttgcagt tagtagagaa aacttactct cctgatacat 240 tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag 300 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg tctcaacttc 360 gacagcccat atgtgagccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca 420 tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat 660 gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt cagagatcgt 720 agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc 780 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat 840 gcaactgtca ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt 900 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga gaatcattct 960 gagaatgctt taatgttgta tatggcgtgt actcacgcct ctaacccagt gtatgctacc 1020 ttgaagatac ggatctactt ctatgattcc gtgacaaatt aataaatatt gaattttatt 1080 gaagatgatt ggtttacaaa tacaacatgt tgtaaaacat tccataatac atgatcaact 1140 gctctaacta cattattaat actgacaatt cctaagttat ttaaatattt aagcacttga 1200 gtcttaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca gattcggaaa 1260 gctatgaaac atttgtgtat ccccaacgct ttcctcaggt tgtgattgaa ctggatcctg 1320 atcgtgagta tatccatatt cgtcgtgaat ggacggttga cgttgctgat gatcttgaaa 1380 tagaggggat ttggaacttc ccagatatat gcgccattcg ctgcttgagc tgcagtgatg 1440 ggttcccctg tgcgtgaatc catggttgtg gcagttgatt gacagataat aagagaaccc 1500 ctcattcata tctactctcc tcctcctgtt gcgtctcttc gcttccctgt gctgtacttt 1560 gattggaagc tgagtacagt ggtccttcga gagtgatgaa gattgcattt tttaaggccc 1620 aattctttaa tgctgtgttt ttttcctcgt tgaggaattc cttataactg ctgttcgtcc 1680 caggattgca caggaagatt gtcggtatcc cgcctttaat ttgaactggc tttccgtatt 1740 ttgtgttgga ctgccagtct ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat 1800 gcgggtcgac gtcatcaatg acgttgtacc aggcgtcgtt actgtatatt ttgggactca 1860 ggtccagatg tccgcacaaa tagttatgtg gtcccaatga tctagcccac atcgtcttcc 1920 ccgttcgact atctccctca attactatac tccgaggtct aaggggccgc gcagcggcat 1980 cgacaacgtt atcgatggcc caaattccaa gttcttctgg aacttgatcg aaagaagaag 2040 gagaaaaagg gaaaatatac ggagcgggtg cctctctgaa gattcttgtt agatttgcat 2100 ttaaattatg aaattgtagt ccaaaaattt taggagctag ttccttaagg actctaagag 2160 cctctgactt actgcccgcg ttaagtgctg cggcgtaagc gccgttggct gtctgctgtc 2220 ctcctctcgg tgatcttcca tctatctgaa actctcccca ctcgaaagcg tccccgtcct 2280 tgttgatgta ggccttgaca tctgagcttg atttagctcc ctgaatgttc ggatggaaat 2340 gtgctgcccg gttgggggaa accaggtcga agaatttgtt atttgtgcag acgaatttgc 2400 cctcgaaccg gatgagcaca gggagatgag ggctcccatc ttcgtgtaac tctctgcaga 2460 gtttgatgta tttttttttc gagggtgtgt tgatggcttg aatttgggaa agtgcttcct 2520 ctttagtgag tgagcactgt ggataagtga tgacgtaaag gatagcttgt actttaaaac 2580 gtttgggggg agccattgac tttggtcaat tagagacaac tgatggcctt tttccctgtt 2640 tattggagac tggatacaat ttatagtgtc taaaggtgcc attctgtaaa taactagaag 2700 ttgttgaaat caaatacctc ttggcccaaa agcggccatc cgtataatat t 2751 //