ID JF496657; SV 1; circular; genomic DNA; STD; VRL; 2719 BP. XX AC JF496657; XX DT 08-MAY-2011 (Rel. 108, Created) DT 30-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Jatropha curcas mosaic virus-[Jalgaon] segment DNA-A, complete sequence. XX KW . XX OS Jatropha curcas mosaic virus-[Jalgaon] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2719 RA Soni R.K., Mishra A., Dalvi V.S., Mishra A.A., John P., Gour H.N.; RT "A new strain of Indian cassava mosaic virus causes a mosaic disease in the RT Jatropha curcas"; RL Unpublished. XX RN [2] RP 1-2719 RA Soni R.K., Mishra A., Dalvi V.S., Mishra A.A., John P., Gour H.N.; RT ; RL Submitted (03-MAR-2011) to the INSDC. RL Jain Biotech R&D Lab, Jain Irrigation System Limited, Jain Hills, Sirsoli RL Road, Jalgaon, Maharashtra 425001, India XX DR MD5; d000cb447e3fe5f37b39f83c82807ed3. XX FH Key Location/Qualifiers FH FT source 1..2719 FT /organism="Jatropha curcas mosaic virus-[Jalgaon]" FT /segment="DNA-A" FT /host="Jatropha curcas" FT /isolate="Jalgaon" FT /mol_type="genomic DNA" FT /country="India:Maharashtra" FT /collected_by="R. K. Soni" FT /collection_date="15-Feb-2009" FT /identified_by="Ashok Mishra" FT /PCR_primers="fwd_name: JAFF.1, fwd_seq: FT gagcctctgatttactgccgc, fwd_name: JVF, fwd_seq: FT acgtggagatgtccccca, rev_name: DCR, rev_seq: FT cgcggcccaccggtaatatta, rev_name: JVR, rev_seq: FT cgtcaagtcctacatcgacaa" FT /db_xref="taxon:1027399" FT gene 134..463 FT /gene="AV2" FT CDS 134..463 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:F5C7S3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:F5C7S3" FT /protein_id="AED89161.1" FT /translation="MWDPLLNEFPDTVHGFRCMLALKYLQLVESTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYHHFNSRLEGTSPSDLRQPIQQPCVCPHCPRHKKTSLDKQAHES FT EAQMV" FT gene 294..1067 FT /gene="AV1" FT CDS 294..1064 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 coat protein" FT /db_xref="GOA:F5C7S4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F5C7S4" FT /protein_id="AED89162.1" FT /translation="MSKRPADIIISTPVSKVRRRLTFDSPFSSRASVPTVRVTKRQAWT FT NRPMNRKPRWYRMFKSPDVPKGCEGPCKVQSFEARHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKIWMDENIKTRNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1061..1450) FT /gene="AC3" FT CDS complement(1061..1450) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:F5C7S5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F5C7S5" FT /protein_id="AED89165.1" FT /translation="MDSRTGELITAAQAMNGVFIWEVTNPLYFKIIQHDNKPFGMTMDI FT ITIQIRFNHNLRKALGLHQCWIDFKVWTTLQPQTWRFLRVFKYLDSLGIISINTVVNAV FT EHVLYNVLDGTVSVEQTNLIKFNVY" FT gene complement(1191..1598) FT /gene="AC2" FT CDS complement(1191..1598) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:F5C7S6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F5C7S6" FT /protein_id="AED89164.1" FT /translation="MQPSSPSKSHYTQVPIKVQHKAAKRRAIRRKRVDLNCGCSYYVHI FT NCRNHGFTHRGTHHCSSGDEWRLYLGSNKSPIFQDHSARQQTVRNDDGHNNHPDTIQPQ FT PEESVGTTSMLDRFQGLDDLTASDLAFLEGI" FT gene complement(1528..2586) FT /gene="AC1" FT CDS complement(1528..2586) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:F5C7S7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F5C7S7" FT /protein_id="AED89163.1" FT /translation="MSPPKRFQINAKNYFLTYPRCSLTKEEALSQIRALQTPTNIKFIK FT ICRELHENGVPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGTFQIDGRSARGGQQSANDAYAAALNSGSKSEALKILRELAPRDYLRDFN FT HISSNLDRIFTTQPTPYQNPFSISSFDRVPEELDRWFHENVMDAAARPLRPKSIVIEGD FT SRTGKTMWARALGPHNYLCGHLDLNPKVYNNDAWYNVIDDVDPHYLKHLKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKAWALKNATFISLEEPL FT YSGTNQGPTQSC" FT gene complement(2127..2429) FT /gene="AC4" FT CDS complement(2127..2429) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F5C7S8" FT /protein_id="AED89166.1" FT /translation="MGYLICTCSSSLKANTNARISDSSTWYPQPGQHISIRTFRELNPA FT PTSSPTSTRTVIHWNGEHSRSMEDLPEGVNNLQTTLTPQHLTAAVNQRLSRSLGN" XX SQ Sequence 2719 BP; 675 A; 587 C; 650 G; 807 T; 0 other; accggtgggc cgcgccccgc tttgtggtgg gcccctccac gtggagatgt cccccactca 60 gaacgcgcgc tcaacgcttg aatatttgtg gtccccctta taactacttc gcgagcaagt 120 ttacacttgc aacatgtggg atccactatt gaacgaattc ccagacaccg tacacggttt 180 ccgttgtatg ctagcgctga agtatcttca gcttgtcgaa agtacgtatt ctcctgatac 240 gcttggttac gatttaatca gagatttgat ctctgtcatt agggcgaaga attatgtcga 300 agcgaccagc agatatcatc atttcaactc ccgtctcgaa ggtacgtcgc cgtctgacct 360 tcgacagccc attcagcagc cgtgcgtctg tccccactgt ccgcgtcaca aaaagacaag 420 cctggacaaa caggcccatg aatcggaagc ccagatggta taggatgttc aaaagtccag 480 atgttcctaa ggggtgtgaa ggcccatgta aggtccagtc gtttgaggct agacacgatg 540 tggtccatat aggtaaggtc atgtgcatct ctgatgtcac ccgtggtgtt gggcttactc 600 atcgcgtggg taagaggttt tgcgtgaagt ccgtttacat ccttggtaaa atatggatgg 660 atgaaaatat caagaccagg aatcacacta atagcgtgat gttcttcctc gttagggatc 720 gtaggcctgt tgataagccc caggatttcg gtgaggtgtt taacatgttt gataatgaac 780 ctagtacagc tactgtgaag aacatgcatc gtgatcgcta tcaagtcctc aggaagtgga 840 gtgccactgt cactggtggt cagtatgcga gcaaggaaca ggctttagtt aggcgtttct 900 ttagagttaa taattatgtt gtgtataatc agcaagaggc tggcaaatat gaaaaccata 960 ctgagaatgc attgatgctg tacatggcgt gtactcacgc ctctaatcct gtatacgcta 1020 cgctgaaaat tagaatctat ttttatgatt cggtcagcaa ttaataaaca ttaaatttta 1080 ttaaattagt ctgctcaaca ctgacagtcc catcgagtac attgtacaat acatgctcta 1140 cggcgtttac aactgtatta atacttataa tccctaaact atcgaggtat ttaaataccc 1200 tcaagaaacg ccaggtctga ggctgtaagg tcgtccagac cttgaaatct atccagcatt 1260 gatgtagtcc caacgctttc ctcaggttgt ggttgaatcg tatctggatg gttattatgt 1320 ccatcgtcat tccgaacggt ttgttgtcgt gctgaatgat cttgaaatat aggggatttg 1380 ttacttccca gataaagacg ccattcatcg cctgagctgc agtgatgagt tcccctgtgc 1440 gtgaatccat ggttgcggca gttgatgtgt acgtagtatg agcacccaca gtttagatca 1500 accctcttac gccggatggc tctacgctta gcagctttgt gttggacctt gattggtacc 1560 tgagtatagt ggctcttcga gggagatgaa ggttgcattt ttgagtgccc aggcttttaa 1620 tgcgctattc ttttcttcgt ccaggaactc tttatagctg gaattgggcc ctggattgca 1680 gaggaagata gtgggaatac cacctttaat ttgaactggc ttcccgtact ttgtgtttga 1740 ttgccagtcc ttctgggccc ccataaattc ctttaagtgc tttagatagt ggggatctac 1800 gtcatcgatg acgttgtacc atgcatcatt gttgtagacc ttgggattta gatccagatg 1860 tccacatagg taattatgtg gacccaatgc acgagcccac atagtcttac ctgtccgact 1920 atcgccttcg attacgatgg atttaggtct caaaggccgc gcagcggcat ccatcacgtt 1980 ttcgtgaaac caccggtcga gttcttctgg aactcggtca aatgaagaga tggagaaagg 2040 gttttgatac ggagtcggtt gtgttgtaaa aatccgatcc aggttcgaac ttatatgatt 2100 gaagtctcgt aaataatccc taggtgctaa ttccctaagg atcttgagag cctctgattt 2160 actgccgctg ttaagtgctg cggcgtaagc gtcgtttgca gattgttgac cccctctggc 2220 agatcttcca tcgatctgga atgttcccca ttccaatgta tcaccgtcct tgtcgatgta 2280 ggacttgacg tcggagctgg atttagctcc ctgaatgttc ggatggaaat gtgctgacct 2340 ggttggggat accaggtcga agaatcgctg attctggcat ttgtatttgc cttcaaactg 2400 gatgagcacg tgcagatgag gtaccccatt ctcgtggagt tccctgcaga ttttgatgaa 2460 tttaatgttt gttggtgttt gaagcgctct aatttgtgaa agtgcctctt ctttagttag 2520 agagcaccta ggataagtga ggaaatagtt cttagcgttt atttgaaagc gcttaggtgg 2580 agacattctc tctcctcaat cggtactcaa ccatttagcc cccatattag gtactcaata 2640 tatacatgag taccaaatgg catatgtgta aataatggga atataatttg aaattgaaag 2700 cggccatccg tataatatt 2719 //