ID JF495127; SV 1; linear; genomic RNA; STD; VRL; 4152 BP. XX AC JF495127; XX DT 18-SEP-2011 (Rel. 110, Created) DT 16-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Soybean yellow common mosaic virus, complete genome. XX KW . XX OS Soybean yellow common mosaic virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4152 RX DOI; 10.1016/j.virusres.2011.08.005. RX PUBMED; 21875629. RA Nam M., Kim J.S., Park S.J., Park C.Y., Lee J.S., Choi H.S., Kim J.S., RA Kim H.G., Lim S., Moon J.S., Lee S.H.; RT "Biological and molecular characterization of Soybean yellow common mosaic RT virus, a new species in the genus Sobemovirus"; RL Virus Res. 163(1):363-367(2012). XX RN [2] RP 1-4152 RA Nam M., Kim J.S., Lee J.B., Kim S.M., Park S.J., Lee J.H., Park C.Y., RA Jun E.S., Choi H.S., Lee J.S., Kim J.S., Lee S.H.; RT "Soybean yellow common mosaic virus complete genome, P18 protein, P63 RT protein, P59 protein and Coat protein"; RL Unpublished. XX RN [3] RP 1-4152 RA Nam M., Kim J.S., Lee J.B., Kim S.M., Park S.J., Lee J.H., Park C.Y., RA Jun E.S., Choi H.S., Lee J.S., Kim J.S., Lee S.H.; RT ; RL Submitted (03-MAR-2011) to the INSDC. RL Crop Protection Division, National Academy of Agricultural Science, RDA, RL Suin-ro, 150th, Suwon, Gyeonggi-do 441-707, Korea XX DR MD5; 0827868cc593732cda7a04e99f8c759d. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4152 FT /organism="Soybean yellow common mosaic virus" FT /host="Glycine max" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="15-Jul-2004" FT /db_xref="taxon:1080798" FT CDS 78..566 FT /codon_start=1 FT /product="putative movement protein" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:G3F8C4" FT /protein_id="AEO16605.1" FT /translation="MTDTVVVNFSLIRTRCVERFGVNSLPVGRHFIGSEEIPTGIDFVE FT RSFQVTAFGNYSVPERSRVRLIDCPVSCEGTFKFDPVPLWLSINCRVCQTEANLIINQE FT LVPGYSENSKFVFCDTEGRPLRIRTRRGIQPSRFYHQEEKTICQSCVIQGCLRTRSWS" FT CDS 524..2248 FT /codon_start=1 FT /product="protease/VPg" FT /note="ORF2a" FT /db_xref="GOA:G3F8C5" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:G3F8C5" FT /protein_id="AEO16606.1" FT /translation="MRHPGLFAYTLLVVNMASFAILLDSFMLGAYRSDHMVPVVALMTL FT CATVLWLSLSLVSFLYGYVRVRLVPEAKQERKYYVAHSAPYFDPTLGVMMKFTPNHGGP FT SIEVQVNPSWISLLDRSLKINGDEHSNESAILGSFYSAVKPGDEPASLVAIKSGPHTIG FT FGCRTKIDGEDALLTANHVWNGAAKPDALAKNGKQVAVEDWAVPVSSDHQMLDFVAVRV FT PSCVWSKLGVKSTPLVCPSAKDAVTCYGGPSSDELLSSVGNCSPTEFAWKVTHNCPTAA FT GWSGTPLYSSRGVVGMHTGFENIGKMNRGVNMFYVANYLLRSQETLPPELSVIEIPFED FT VETRSYEFLEVEIVGRGKAKLGKREFAWIPESGKYWADQDEDELPPPPKMQGGKLVWAD FT AQETLPWLEEPLNCQRAAGLRPLPPSMRLQATTSQREKLPRLEECPSDLLVSRLASLES FT CVENLLQKMSLEPPQHSQSSPTTLGPIEAQKQSFAPSYCKQESLIPPGSQAILKELVKT FT SLSATPPPNPVQALDQKPGPSTQSSKKSARRRNRRKSTKRQAQGSPSPASLPPTKTS" FT CDS 1852..3417 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /db_xref="GOA:G3F8C6" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:G3F8C6" FT /protein_id="AEO16607.1" FT /translation="MPLRFVGQSSCQFRELCRKPTSEDVTRATATFPELSDYSWPDRGS FT KAELRSLLLQAGKFNPTRVPSNLEGACQNLLERYPASKPCSSLRSEAWSFDAVFEEVCK FT KAQSAEINEKASPGVPLARLASTNKDIIRKHLQFVALCVTERLFLLSEVEGLENITPVE FT MVELGLCDPVRLFVKQEPHASRKVKEGRFRLISSVSLVDQLVERMLFGKQNQLEIAEWE FT NIPSKPGMGLSLERQARSLFDDLRIKHSRCPAAEADISGFDWSVQDWELWADVEMRIVL FT GGFGDKLSRAARNRFSCFMNSVFQLSDGTLIEQQQPGIMKSGSYCTSSTNSRIRCLMAE FT LIGSPWCIAMGDDSVEGWVESAKDKYKELGHVCKDYKPCQTDIEGSLYEVEFCSHVVRQ FT SRCWLNSWPKTLFKYLSEGKWFYEDLERELWSSPHWPRIRQYVVDNTPSVHKTIKPSPS FT YGEEANQTAASQGHSEHFGTTFRSSTPEEEEPKQASFCCDAASAYPGWGIHGPYCSGDY FT GASS" FT CDS 3227..4030 FT /codon_start=1 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:G3F8C7" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G3F8C7" FT /protein_id="AEO16608.1" FT /translation="MAKRLTKQQLAKAIANTLEPPSGAQPRKRRNRSRRRSAAMQPRPI FT QAGVSMAPIAQGTMVRLREPSMRTTGGITTLTHSELSTELSVTSTIVVASELVMPYSVG FT TWLRGVASNWSKYAWISVRYTYLPACPSDTAGTIHMGFQYDMADTVPVSVNQLSNLRGY FT VSGQVWSGSSGLCFINGTKCLDTSSAISTTLDVSKLGKKWYPYKTSTDYTTAVGVDANI FT ATPLVPARLVIAMLDGTSTTAVNAGRLYVTYTIQLVEPIASALNN" XX SQ Sequence 4152 BP; 994 A; 1005 C; 1097 G; 1056 T; 0 other; acaaaatata agaacaaaga gtctggatct ttgtaccttt gtgccaccta agctggtatt 60 ggtttatcac acaacgtatg accgacacag tcgtcgtgaa cttttcactg atccgaaccc 120 ggtgcgtgga acgctttggc gtgaattccc tcccagttgg aagacatttc attggttctg 180 aggaaattcc taccggcatc gatttcgttg agcggtcttt tcaggttacg gcctttggga 240 attattcggt tcctgagaga agcagagtta gattgataga ctgcccggtg tcgtgcgagg 300 ggacttttaa gttcgaccct gtacccctgt ggctatccat caactgccga gtttgtcaaa 360 ctgaggctaa ccttatcatc aaccaggagt tggtgcctgg gtatagtgaa aacagcaagt 420 tcgtgttttg tgacaccgaa gggagacctt tgcgaatcag aacacgaaga ggcattcagc 480 ctagccgatt ttaccaccag gaagaaaaga ccatttgtca gtcatgcgtc atccagggct 540 gtttgcgtac acgctcttgg tcgtgaacat ggcaagcttt gctatactcc tagattcgtt 600 catgctggga gcatacaggt cagatcacat ggttccagtt gtggccttga tgaccctgtg 660 cgctaccgtg ctttggttga gtctgtcact cgtgagcttc ctttacggat atgtccgagt 720 tcggctagtt cccgaagcta agcaggaacg gaagtattat gtagcccatt cggctccata 780 tttcgatccc acactaggag tcatgatgaa gttcaccccc aatcatggcg ggcctagcat 840 agaagtgcaa gtgaacccat cttggattag tttgttagat cgctctctca agataaacgg 900 agatgagcat tcaaacgaat cggccattct gggtagcttc tactctgctg tcaagccagg 960 ggatgaacct gcaagtttgg ttgctataaa gagcggccca cataccattg gttttggttg 1020 cagaactaag atagatggcg aagacgctct tttgacagcc aatcatgttt ggaatggcgc 1080 tgcgaagcct gatgctcttg ccaagaatgg caagcaagtg gctgttgagg actgggcagt 1140 tcccgtgtcc tccgaccacc agatgctcga tttcgtggct gttcgagtac catcatgtgt 1200 ttggtcaaag ctaggtgtta agtcaactcc gttggtttgt ccgtccgcca aggatgctgt 1260 tacatgctac gggggaccca gctctgacga gctgctgtcc agtgttggaa attgtagtcc 1320 caccgagttc gcttggaaag tgacacacaa ttgccccaca gcagctggtt ggagtggaac 1380 accgttgtat tcgtccaggg gagttgttgg catgcacacg ggttttgaaa acattggcaa 1440 gatgaaccgt ggtgtcaaca tgttttacgt tgcaaactac cttttgaggt cacaagaaac 1500 tctacctcca gagttatccg ttatcgaaat ccctttcgag gacgttgaga cacggagtta 1560 tgagtttctg gaagttgaga tcgtagggag aggtaaggct aaacttggta agcgtgagtt 1620 cgcttggatt cctgagagcg gaaagtattg ggctgatcaa gatgaagatg agctccctcc 1680 acccccgaag atgcagggag ggaagttagt ttgggccgat gctcaagaga ctcttccgtg 1740 gctagaagag cctttaaact gccagcgggc ggcagggttg cgacccttgc cgccctctat 1800 gagattgcag gctaccactt cacagaggga gaagttgcct cgtctggagg aatgcccctc 1860 agatttgttg gtcagtcgtc ttgccagttt agagagctgt gtagaaaacc tacttcagaa 1920 gatgtcactc gagccaccgc aacattccca gagctctccg actactcttg gcccgataga 1980 ggctcaaaag cagagcttcg ctccctctta ttgcaagcag gaaagtttaa tcccaccagg 2040 gtcccaagca atcttgaagg agcttgtcaa aacctccttg agcgctaccc cgcctccaaa 2100 ccctgttcaa gccttagatc agaagcctgg tccttcgacg cagtcttcga agaagtctgc 2160 aagaaggcgc aatcggcgga aatcaacgaa aaggcaagcc caggggtccc cctcgcccgc 2220 ctcgcttcca ccaacaaaga catcataagg aagcatttgc agtttgttgc tctttgtgtt 2280 acagaaagac ttttcctact cagcgaagtt gagggtctag agaacattac tcccgttgaa 2340 atggtcgagc ttggtctctg tgatcctgtc agactttttg tgaagcaaga accacacgcc 2400 tcccgcaagg ttaaagaggg caggttcagg ctcatttcgt ctgtctcact ggttgatcaa 2460 cttgttgagc gcatgctttt cgggaagcag aatcagttag agatagctga gtgggagaat 2520 ataccgtcga aacctggaat gggcctttct ttagagaggc aggccaggtc gctgtttgat 2580 gacttgagga tcaagcattc tcgttgtcca gctgccgagg ccgacatatc gggttttgac 2640 tggtctgtgc aagactggga gttatgggct gatgttgaga tgagaatagt tctgggcggc 2700 tttggagaca agttgtctcg agctgccagg aacaggttct cgtgcttcat gaactcagtc 2760 ttccagttgt ctgatggcac actgatcgag caacagcagc ctggaataat gaagtccggg 2820 tcttactgca cctcatccac caactccaga attcgatgcc ttatggctga gctaattggc 2880 tccccctggt gcattgccat gggtgacgat tcagttgagg ggtgggtcga gagtgctaag 2940 gacaagtaca aggaattggg gcatgtgtgc aaggactaca agccttgcca aaccgacatt 3000 gaaggctctc tctacgaagt tgaattctgt tctcacgtag tgaggcaaag ccgctgttgg 3060 ttgaactcat ggcctaagac cctgttcaag tacttgtctg agggtaagtg gttttatgaa 3120 gatctggagc gagagctctg gtcgtctccc cactggcccc ggatccggca gtatgtagtg 3180 gacaatactc catcggtcca caaaaccata aaaccaagtc ctagttatgg cgaagaggct 3240 aaccaaacag cagctagcca aggccatagc gaacactttg gaaccacctt caggagctca 3300 accccggaag aggaggaacc gaagcaggcg tcgttctgct gcgatgcagc ctcggcctat 3360 ccaggctggg gtatccatgg cccctattgc tcaggggact atggtgcgtc ttcgtgagcc 3420 gtcaatgcgg acgactggag gcatcacgac tcttactcac tctgagcttt cgacagagct 3480 ctcagttacg agcacgatcg ttgttgcctc cgagctagtg atgccctact cagtgggcac 3540 ttggctgaga ggagtggctt ccaactggtc taagtacgct tggatctcag tgaggtatac 3600 ttacctcccc gcctgtcctt ccgacacggc gggcaccatt catatgggtt ttcaatatga 3660 tatggcagat actgtgcccg tatccgttaa ccagctttcc aatctgcgtg gctacgtgtc 3720 cgggcaggtc tggtcgggtt cgtccggctt gtgtttcatc aatggaacca agtgtctgga 3780 cacttcttcc gctatctcca ctactttgga tgtgagtaag cttggtaaga agtggtaccc 3840 gtacaagact agcactgact acacgaccgc agtaggtgtg gatgctaaca tcgcgactcc 3900 tctggtacca gcaaggctag taatagctat gctggatgga acgagtacca ccgcggtaaa 3960 tgctggacgc ctttacgtta cgtacaccat tcagttggtc gagcctatcg cctcagcctt 4020 gaacaactga gaagttgtaa aacatcctcc tcatccttcg gaaagatgag tgagtaattc 4080 acaacccgcg aggttttgga aggtaatctc gttaaaacct ttcacgctag aaatggagcg 4140 taatccaaat gt 4152 //