ID JF437874; SV 1; linear; genomic RNA; STD; VRL; 3187 BP. XX AC JF437874; XX DT 23-MAR-2011 (Rel. 108, Created) DT 23-MAR-2011 (Rel. 108, Last updated, Version 1) XX DE TGP Carmovirus 3 isolate 08TGP00078 putative RNA-dependent RNA polymerase DE and putative replication associated protein genes, partial cds; and DE putative movement protein 1, putative movement protein 2, and putative coat DE protein genes, complete cds. XX KW . XX OS TGP Carmovirus 3 OC Viruses; Riboviria; Tombusviridae. XX RN [1] RP 1-3187 RG Plant Virus Biodiversity and Ecology Consortium RA Scheets K., Blinkova O., Melcher U., Palmer M.W., Wiley G.B., Roe B.A.; RT "Detection of members of the Tombusviridae in the Tallgrass Prairie RT Preserve"; RL Unpublished. XX RN [2] RP 1-3187 RG Plant Virus Biodiversity and Ecology Consortium RA Scheets K., Melcher U., Blinkova O., Palmer M.W., Wiley G.B., Roe B.A., RA Dutta M.; RT ; RL Submitted (22-FEB-2011) to the INSDC. RL Biochemistry & Molecular Biology, Oklahoma State University, 246 NRC, RL Stillwater, OK 74078, USA XX DR MD5; 78bc4692a88109cf61d029287fb71ff2. XX FH Key Location/Qualifiers FH FT source 1..3187 FT /organism="TGP Carmovirus 3" FT /host="Ambrosia psilostachya" FT /isolate="08TGP00078" FT /mol_type="genomic RNA" FT /country="USA" FT /lat_lon="36.8 N 96.42 W" FT /collection_date="16-Jun-2008" FT /db_xref="taxon:944582" FT CDS <1..1691 FT /codon_start=3 FT /transl_except=(pos:117..119,aa:OTHER) FT /product="putative RNA-dependent RNA polymerase" FT /db_xref="GOA:F2YS77" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:F2YS77" FT /protein_id="ADZ73441.1" FT /translation="VDNVWLYFISHPWKGKAWRNVVLRALGMPPQEAYEFAKXGCLMHT FT CGVDTKVFRGEHHWVKEGHEARSIPPRKLYNIAGVGPNIHWGVHNSSYVNLRRGLMERV FT YYVERQGKLAQCPTPTAGIFKRLFTKYGHRIAGLCGNHSKVSREDFVGSYCGRKRTIYA FT NAVASLDERPLLRRDSFLSTFVKCEKLNFSKKPDPAPRVIQPRDPRYNVELGVYLKRFE FT HSAYRALDKMWGEPTVMKGYTVEQMGKILSDKWNKYQTPVAIGFDMSRFDQHVSVDALK FT FEHKIYKTVYKGDGLLAKLLDWQLDNRGTAFAKDGWLKYRVEGKRMSGDMNTALGNCIL FT ACTITKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGFTCVAELPVR FT VLEKVEFCQMQPVLRNGGYVLVRNPRVSISKDCHSTTPFDSVRLAQEWAYSIGVGGISL FT THGIPLVQEFYTMLMRNGKKHQSLKKEMLFYGDYYASWVKIHKGEYEPVTEESRHSFHL FT AFDISPDQQVAMEDELKQMALEWEFAPFSRIANSTEWTLNQPIKI" FT CDS <1..119 FT /codon_start=3 FT /product="putative replication associated protein" FT /db_xref="UniProtKB/TrEMBL:F2YS78" FT /protein_id="ADZ73440.1" FT /translation="VDNVWLYFISHPWKGKAWRNVVLRALGMPPQEAYEFAK" FT gap 1042..1162 FT /estimated_length=121 FT CDS 1661..1846 FT /codon_start=1 FT /product="putative movement protein 1" FT /db_xref="GOA:F2YS79" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:F2YS79" FT /protein_id="ADZ73444.1" FT /translation="MDAQPTNQDLAKKDQTAKRGKTKNRLDVAHSGVSKGTSRDLVGAN FT FVAVADTITYHVTLNF" FT CDS 1752..1991 FT /codon_start=1 FT /product="putative movement protein 2" FT /db_xref="GOA:F2YS80" FT /db_xref="UniProtKB/TrEMBL:F2YS80" FT /protein_id="ADZ73443.1" FT /translation="MASARVHLGTLSVLILLQLLIRSPITLRLTFDFDPSPNLLSSIVL FT SIFFVSVLGNSGSVHYYYQANSTADKFISVAVGK" FT CDS 1988..3001 FT /codon_start=1 FT /product="putative coat protein" FT /db_xref="GOA:F2YS81" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F2YS81" FT /protein_id="ADZ73442.1" FT /translation="MTAGASPITLSYAAQGHAWAIKLRDKGWRSLSPAQKKAARAAGIG FT PQPTPVIVPKVNRLVAGNPTNARRKPTDPGNANTSMTITKQEFLGTLFSGDEISTYILD FT PRNVKTFPNISNMAIGYNKYKITNAKLRYSSRATDSDCSIIIAYNSDSSDTPPASKLDL FT YSMATKHEGPSSKPLLMSLPISKETRYLRDRNTDEAKLVDSGSFHILVDGKHDGRLGEL FT FFELTIVLSEPTFLRPASQIITGTSSRGPDIVTVDRGNTSCTIRFNAVGRFIISASGTS FT IKKLSQVGMEKASLSRTDSDSDSTFIAEVIASEPGASIIVEYPSGGYNQKVYVSRM" XX SQ Sequence 3187 BP; 843 A; 709 C; 785 G; 728 T; 122 other; cggtggacaa cgtatggctc tactttatca gccacccatg gaagggcaaa gcgtggagga 60 atgtagtact gcgggcttta ggtatgcctc cccaagaggc atacgagttc gccaaatagg 120 ggtgcctcat gcacacctgt ggtgttgaca cgaaagtgtt tagaggggaa caccactggg 180 ttaaggaagg gcatgaggcc cgtagcatcc ctcctaggaa actatataat atagcaggtg 240 tgggtcccaa tatccattgg ggagtacaca atagtagtta tgttaatctt aggcgcgggt 300 tgatggagag agtttactac gtcgaaagac aaggtaaact tgcccaatgc cccaccccta 360 ctgcggggat atttaaacgg ctgttcacca agtatggtca caggatagct gggttgtgtg 420 gaaatcattc caaggtctcc cgcgaagact tcgtgggatc gtactgcggc aggaagcgca 480 cgatctatgc caatgctgtg gccagtcttg atgagcgccc gttactacgc agagatagtt 540 ttcttagtac ttttgtaaaa tgcgagaagt tgaactttag caagaagccg gacccagctc 600 caagagtgat acaaccccga gatccgcgtt ataacgtgga gcttggggtc tacttaaaga 660 ggttcgagca ctctgcttat agagcgttag ataagatgtg gggtgaacct accgttatga 720 aagggtacac cgttgagcaa atgggaaaga ttcttagtga caagtggaat aagtaccaga 780 caccagtggc aataggcttt gatatgagta gatttgatca gcacgtgtct gtggatgccc 840 taaagttcga gcataaaatt tacaaaacag tctacaaagg ggatggtctc ctggccaaac 900 tcctggactg gcagctcgac aatcggggaa ctgccttcgc caaagatgga tggctcaaat 960 acagagtgga aggcaaaagg atgagtggag acatgaacac tgcccttggg aattgcattt 1020 tggcttgcac tatcaccaaa gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1080 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1140 nnnnnnnnnn nnnnnnnnnn nnatatggat ttacatgtgt cgctgagctc cccgttagag 1200 tactggagaa ggtggaattt tgccaaatgc agcccgttct cagaaatgga ggatacgtac 1260 tagtccgcaa ccccagggtc agcatatcta aagattgcca ctctaccact ccgttcgact 1320 ccgttcggct agcgcaggag tgggcttact ccatcggtgt gggggggatc agtttaaccc 1380 acggcatccc acttgtacag gaattctaca ctatgctcat gcgtaacggg aagaagcacc 1440 agagccttaa gaaagaaatg ttattctatg gcgactacta tgccagctgg gtaaaaattc 1500 acaaaggcga gtatgaacct gtaacggaag aaagccgtca cagtttccac ttggcttttg 1560 atattagccc agatcaacaa gttgccatgg aagatgagct caaacagatg gctctggagt 1620 gggagttcgc cccattcagt agaattgcca attctactga atggacgctc aaccaaccaa 1680 tcaagatcta gcaaagaaag accaaacagc taagcgtggt aagacaaaga atcgattaga 1740 cgttgctcat tctggcgtca gcaagggtac atctagggac cttgtcggtg ctaattttgt 1800 tgcagttgct gatacgatca cctatcacgt tacgcttaac ttttgatttt gatccttccc 1860 ccaacttact aagctctata gttctcagca ttttctttgt ttcagtttta ggaaatagtg 1920 gtagtgtgca ttactattac caggcgaaca gtacagcaga taaattcatc tcagtcgcag 1980 taggaaaatg accgcaggtg ctagtccaat aactctgagt tacgctgccc aaggtcatgc 2040 ttgggcgatt aagctgaggg acaaaggttg gcgtagtttg agtcctgccc aaaagaaagc 2100 tgcacgcgca gctggaattg ggcctcagcc tacccctgtc attgtcccga aggttaatcg 2160 ccttgttgct ggtaacccca cgaacgctag gcgaaagcct accgaccctg gaaatgccaa 2220 cacaagcatg accataacaa agcaggagtt ccttggaacc ctgttcagcg gcgacgaaat 2280 cagcacctac atcttggacc cccgaaacgt aaagactttc cccaacataa gcaacatggc 2340 cattgggtac aacaagtaca agatcaccaa tgccaagctt cggtattcca gccgagccac 2400 agacagtgac tgctcaatca tcattgcata caacagtgac agcagcgaca ctccaccggc 2460 ttcgaagctt gatctctaca gcatggccac aaagcatgaa ggtcccagca gcaagccatt 2520 acttatgagc ttgccgataa gcaaggagac taggtacttg cgagatcgta acacagatga 2580 ggcaaagttg gtggatagtg ggagttttca catcctcgtg gatggtaagc acgatggtcg 2640 cctcggagaa ttgttcttcg agttgaccat tgtgctctct gaacccactt tccttcgacc 2700 cgcctcacaa atcattacag gtaccagctc ccgaggacct gacattgtga cagtcgacag 2760 aggcaatact tcctgcacta tacggtttaa tgccgtaggt aggtttatta tctctgcaag 2820 cggcacttcc atcaagaaac tgtcacaagt tgggatggag aaagcaagcc tatccaggac 2880 agactccgac agcgacagca cgttcattgc tgaggtgata gcttcagaac ctggcgctag 2940 tataatagta gagtatcctt ctggtggtta caaccagaag gtttatgttt ctagaatgta 3000 aggggcacta gcccctccca ctgggangcc atgccccatg aattgacatg ggtgggtggg 3060 tactatgtac attatgtgtg tagtgtatac ctttggaggt gctgaaccta agtctagggg 3120 atgtgtctcg tgcctggtgc gccaacacca ggcgaggctc tagacggtgc gggatgaaat 3180 ctggagg 3187 //