ID JF436871; SV 1; linear; genomic RNA; STD; VRL; 4686 BP. XX AC JF436871; XX DT 24-NOV-2011 (Rel. 110, Created) DT 16-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Trichomonas vaginalis virus 2 isolate C351, complete genome. XX KW . XX OS Trichomonas vaginalis virus 2 OC Viruses; Riboviria; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4686 RX PUBMED; 22075038. RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.; RT "Genetic characterization of three Cuban Trichomonas vaginalis virus. RT Phylogeny of Totiviridae family"; RL Infect Genet Evol 12(1):113-120(2012). XX RN [2] RP 1-4686 RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.; RT ; RL Submitted (25-FEB-2011) to the INSDC. RL Parasitology, Instituto de Medicina Tropical Pedro Kouri, Autopista Novia RL del Mediodia km 61/2. Aparartado Postal 601, La Habana 10300, Cuba XX DR MD5; 1be3159996cf4eabf45837feeee2c1f4. XX FH Key Location/Qualifiers FH FT source 1..4686 FT /organism="Trichomonas vaginalis virus 2" FT /host="Trichomonas vaginalis" FT /isolate="C351" FT /mol_type="genomic RNA" FT /country="Cuba" FT /collection_date="Mar-2000" FT /note="genotype: 2" FT /db_xref="taxon:674954" FT CDS join(305..2314,2314..4617) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:G9CIP0" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:G9CIP0" FT /protein_id="AET81016.1" FT /translation="MASTLLSSDKSATLGKDTEVINMPNSSPPDNPSWDHSFPGLTMVL FT DDMSKNPFVNINEIRSVIRNFQRQMILPRTGIRPDAQPRTVDSFEGVVNRIQCTVETQL FT VGATYTVLQETQNHDKSFTEDSTTITPASIPPSISLLDKSRHNRSILRIIQNFKANYLG FT YLLDTPQLQTPQYPQLLAYLFGQLIAIWDRLDLLRPSCPLSLADALNGFTLAQYARPRY FT DDHRHAWACQGPLVIPAASNSDCGPCGFVQIKANQGQTLPLGACHFVNPERVNDQSFQE FT FLWLIFATHHRMPNQMQNNWPFSLNIVSTCAAPDRQAPHAGELTEERVRLARDTGHRIL FT LSKKNDDEETLRYYQLKGIETMFRPCCLYTEGGLLRKATRYVSMVPLNGLYYYNGATSY FT VVSSIVTDAHPGITSAIESFVDIMVLQAVFSFSGPKVVAAKVNARKIDAAMVFGPAVAE FT VDGFVYDPLLPAPPLSAFYTEFIHRPAELRIFQRAMSQIYGSHAPLIIANVINSIHNCK FT TKIVNNKLRATFVRRPPGAPHLISDTAIINRFHDPELAYALGILADGIAPLDGSHEYNV FT LDELDYLYNGGDIRNCFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPVT FT QDAPLDEIYHWRDHGNLTRPYSCHILDSQGLEFADRFQRTVTRKDPCGRLLTGQDMRCL FT PGPQLRAKAGQRHVERINQCGGSVIYPRLSTARACSLSAIDMMTLALAYQLCYLYKSTD FT LHRQLDTMIPQSYLTFLEWLLSFDPHNVKSSIRHFPSQDFHEVITHSLSFLTKEQEITL FT FPIKDIVQANRRVNAYARNLLDASPLPDGALQLMLLPNTANDVVCAILLLGDVLWMLRC FT PISIIVNISRAICGNDSFLKVLSDFNKMLGLTKIPLANCLTELNTLQGRGVTSCDGKSD FT FTYLIADVNPHDSKISRENLREAMYQICKEEITRKEVFDSFKQHVFTSGYWSKKGAHHH FT PLFGSYDNVLECVENVDLDRVLKSHRAVYITQAPKLEHGKTRFIYNCDTVSYIYFDYNL FT NYIENVWSNIHVLLKTFYMFGVVFSRLNYDEYCMLDYTDFNSQHSIESMKQVFLCLFPF FT LPRSMHSILQWCVTSFDNMYMNKTHWGSTLPSGHRATTFINSVLNRAYLLPFLQVCNAF FT HTPDDVLLCGKADYRTLIKTVPYELFKTKQSFGPSPEFLRLHKHNDLVSGYPARAKSRC FT VSPNWLSFAFPLWQPSLLSCMQQLYTISARSGLKPYIPVTLKLGVQRRYDLRSRITNGL FT FSGDIVPSGCPCYKSNAALLSAVDPDTVVKAPPTFYDLRTLHILKHSSPWINSASTYMD FT LLERRHMQSDNKNVIYSIQYVPSKMLPLIDVDPADATPLRKRYHPRSHIAQGLPRDAHL FT KELTFATCRVRPATARRLGSLWPAKTIFVMMPVYV" FT CDS 305..2437 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:G9CIP1" FT /protein_id="AET81015.1" FT /translation="MASTLLSSDKSATLGKDTEVINMPNSSPPDNPSWDHSFPGLTMVL FT DDMSKNPFVNINEIRSVIRNFQRQMILPRTGIRPDAQPRTVDSFEGVVNRIQCTVETQL FT VGATYTVLQETQNHDKSFTEDSTTITPASIPPSISLLDKSRHNRSILRIIQNFKANYLG FT YLLDTPQLQTPQYPQLLAYLFGQLIAIWDRLDLLRPSCPLSLADALNGFTLAQYARPRY FT DDHRHAWACQGPLVIPAASNSDCGPCGFVQIKANQGQTLPLGACHFVNPERVNDQSFQE FT FLWLIFATHHRMPNQMQNNWPFSLNIVSTCAAPDRQAPHAGELTEERVRLARDTGHRIL FT LSKKNDDEETLRYYQLKGIETMFRPCCLYTEGGLLRKATRYVSMVPLNGLYYYNGATSY FT VVSSIVTDAHPGITSAIESFVDIMVLQAVFSFSGPKVVAAKVNARKIDAAMVFGPAVAE FT VDGFVYDPLLPAPPLSAFYTEFIHRPAELRIFQRAMSQIYGSHAPLIIANVINSIHNCK FT TKIVNNKLRATFVRRPPGAPHLISDTAIINRFHDPELAYALGILADGIAPLDGSHEYNV FT LDELDYLYNGGDIRNCFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPVT FT QDAPLDEIYHWRDHGNLTRPYSCHILDSQGLEFADVSNGRSRGKILVDVFSPVKTCAAY FT QGPSFAPKPGSAMWNE" XX SQ Sequence 4686 BP; 1269 A; 1230 C; 916 G; 1271 T; 0 other; gttgtgtggc tttgatggag tgacgaccaa aaaagcccag gcctattcag cctccacaga 60 cactcctggg gtccatcagg agacggatcg ataacgcgaa ctccatgtct gtgtcaatag 120 ccatgtgcgc catcgatact tggtacactt aaacgggaga aggtgccccg cgaactctgg 180 acagtttatt cggattttaa accgtactct gaattgctag ccttatgcaa atgacgtgta 240 ctgagagggc ttatttgtgg ctttcatact agtattgtgt gattgtctac atttaattac 300 gataatggct tcgacgcttt tatcgtctga taaatctgcg acgttaggca aagatactga 360 agttatcaac atgccaaata gttcaccacc cgacaatcca tcttgggacc actcatttcc 420 ggggttaaca atggttctag atgacatgtc caaaaatcct tttgttaata taaacgaaat 480 aagaagtgtg attagaaatt ttcaacgtca aatgattcta cctcgcaccg gaatccgtcc 540 agatgcccag ccacgcacag ttgattcttt cgagggggtc gttaatcgta tccaatgcac 600 cgtcgagact caattagttg gtgcaactta taccgttctt caagaaactc aaaatcatga 660 taaatcattt actgaggatt ctactactat aactccagct tcaattccac cctcaatctc 720 attgctcgat aaatcgcgtc acaaccgatc aatcctaaga atcatccaga acttcaaggc 780 taattattta ggctatttac tagacactcc ccagctgcag accccacagt atccacaact 840 tctcgcttac ttattcggcc agctaatcgc gatttgggat cgcctcgatc tcttgaggcc 900 atcatgtcca ctttctctcg ctgacgcttt gaacggcttc actttagctc aatacgcccg 960 cccacgttac gacgaccaca gacacgcttg ggcatgccaa ggtcccctcg ttattccagc 1020 agctagtaat agtgactgcg gtccctgcgg cttcgtacag atcaaggcaa atcaaggcca 1080 gactctccct cttggcgctt gtcatttcgt caatccagaa agagttaatg atcaatcttt 1140 ccaagaattc ctctggctca tcttcgcaac acaccaccgc atgccaaatc aaatgcagaa 1200 caattggccg ttttctctca acatcgtttc aacatgtgcg gctcctgatc gtcaagcccc 1260 tcacgccggg gaactcactg aggagagggt cagactcgcc cgtgatacag gccaccgcat 1320 tttgctttct aagaagaatg atgatgaaga aactctccgt tattatcaac tcaaaggaat 1380 cgaaacaatg ttcagaccat gctgcctcta cactgagggc ggcttactca gaaaggctac 1440 cagatacgtt tcaatggtcc cactcaacgg cctatattat tacaatggtg cgacctcata 1500 cgttgtctcg tcaatcgtta ccgatgcgca tcctggaatt acttcagcta tcgaatcctt 1560 cgtcgacatt atggtcttac aagcagtctt ctccttttcc gggcccaaag ttgtcgctgc 1620 taaagtcaat gccagaaaaa tcgatgcggc tatggtcttc ggccccgctg tcgctgaagt 1680 tgacggcttc gtctacgacc cactccttcc agcacctcca ctttccgcgt tctacaccga 1740 attcatccac agaccagccg aattacgcat cttccagagg gcgatgagcc aaatctacgg 1800 atcacatgct cctctcatca ttgccaacgt catcaactcc attcacaact gcaagacaaa 1860 gatcgttaac aacaaattac gcgccacttt cgttcgtcgc ccacccggcg cccctcatct 1920 catttccgat actgctatca tcaaccgctt ccacgatcca gaactcgcct acgcactcgg 1980 aatcctcgcc gatggcattg ctcctctcga tggctcgcac gagtacaatg tccttgatga 2040 actcgactac ttatacaatg gtggcgacat tcgcaattgc ttcggcctca acgccctcaa 2100 cacccgtggt ttgggccaaa tcgttcacat ccggccaaaa cgcgagccgg gaaaaagacc 2160 tcgccgcggt ttctacacca cactcgatgg acaggttcac cctgttacac aagatgctcc 2220 actcgatgag atttaccatt ggcgcgacca tggaaatctc acacgtccat attcgtgcca 2280 catcctcgac agtcaaggac tcgagtttgc tgacgtttcc aacggacggt cacgcggaaa 2340 gatccttgtg gacgtcttct caccggtcaa gacatgcgct gcctaccagg gccccagctt 2400 cgcgccaaag ccgggcagcg ccatgtggaa cgaataaacc aatgcggggg cagcgtcatc 2460 tatccgcgct tgagcactgc tcgcgcctgc agcttgtctg ccattgatat gatgacgttg 2520 gccctcgctt accaactgtg ctacctatat aagtcaacag acttacaccg acagttggac 2580 accatgatac cacaatccta cttaacattt cttgaatggc tactcagttt cgaccctcac 2640 aatgttaaaa gctcaattcg tcacttccca agtcaagact ttcatgaagt cattacacac 2700 agtctaagtt tccttactaa ggaacaagaa atcacactgt ttccaatcaa agacatagtc 2760 caagctaacc gtcgcgtgaa tgcttacgcc cgaaatcttc tcgatgcttc accgcttcca 2820 gatggtgccc tacaactgat gctcttacca aatacagcaa atgatgtagt gtgtgcaatc 2880 ttactactcg gtgatgtatt gtggatgctt cgctgcccaa tttcaatcat cgtgaacatt 2940 tcacgtgcaa tatgtggcaa tgatagtttt ttgaaggttt tatctgactt caataagatg 3000 ttaggcttaa ccaagatacc tttagctaac tgcttaactg aattgaatac tttacaaggt 3060 cgtggagtaa cttcttgcga tggcaaaagt gactttacct acctaattgc cgatgtcaat 3120 cctcatgatt cgaaaataag tagagagaat ctcagagaag caatgtatca aatatgtaag 3180 gaagaaatta ctaggaagga agtttttgat tcgttcaaac aacatgtatt cacatctggt 3240 tattggtcca agaaaggtgc acaccatcat ccactttttg ggtcttatga caatgtgctg 3300 gagtgtgttg agaatgtaga cttagacagg gtcttaaaat cacaccgtgc tgtctatatc 3360 acgcaagccc cgaaactaga acatggtaag actcgattca tttacaattg cgatacagtc 3420 agttacattt actttgatta caatttgaat tatatcgaga atgtctggtc taatattcat 3480 gtgctcctga aaacttttta catgttcgga gtggtcttca gtaggcttaa ctatgacgaa 3540 tactgcatgt tagattatac tgacttcaac tcacagcatt ccatcgaaag catgaaacag 3600 gtgtttttat gtctttttcc cttcctgcca aggtctatgc actctatttt acaatggtgc 3660 gtcacgtcat tcgacaatat gtatatgaac aagactcatt ggggttccac actaccgtct 3720 ggccatagag cgacaacatt tattaattct gtgctcaaca gggcttattt acttccattt 3780 ctacaagtgt gtaacgcgtt ccatacaccc gacgatgtac tgttatgcgg aaaggcagac 3840 taccgcacac ttatcaagac tgtaccttac gaactcttca agactaagca atcattcgga 3900 ccctcgcctg aatttctccg acttcacaaa cacaacgacc tggtctctgg ttacccggca 3960 cgtgcaaaaa gcaggtgcgt aagccccaac tggttgtcat tcgcctttcc actatggcaa 4020 ccttcgctac tgtcatgtat gcaacaattg tacacgatat cggcaaggtc aggtctgaaa 4080 ccatatattc ctgtaacttt gaagttaggt gtccagcggc gttatgattt gcgttcacga 4140 attaccaacg gattgttctc tggtgatata gttccaagcg gttgcccttg ttataagtca 4200 aatgcggctt tacttagcgc agtagatcct gacactgtag taaaggctcc ccccaccttt 4260 tatgacttac gtacattgca tatcctaaag cattcatcac cttggatcaa ttcagcgtcc 4320 acatatatgg acctcctgga acgacgacat atgcaatctg acaataaaaa tgttatatat 4380 agtatccaat acgtaccatc taagatgcta cctttgattg atgttgaccc tgcagacgct 4440 accccattac gaaaacggta tcaccctcgt tctcacatcg cacagggact cccacgagat 4500 gcccatctta aggaattaac atttgcaacg tgcagagtgc gcccggctac tgcgagaaga 4560 ttaggatccc tttggcctgc gaaaacaatc ttcgtaatga tgccagtcta cgtttaagta 4620 agactgacaa aatcaaacat aactactcgg ttagtgtagg atagtaatat caactcttac 4680 gtcaac 4686 //