ID JF436870; SV 1; linear; genomic RNA; STD; VRL; 4689 BP. XX AC JF436870; XX DT 24-NOV-2011 (Rel. 110, Created) DT 16-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Trichomonas vaginalis virus 2 isolate C76, complete genome. XX KW . XX OS Trichomonas vaginalis virus 2 OC Viruses; Riboviria; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4689 RX PUBMED; 22075038. RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.; RT "Genetic characterization of three Cuban Trichomonas vaginalis virus. RT Phylogeny of Totiviridae family"; RL Infect Genet Evol 12(1):113-120(2012). XX RN [2] RP 1-4689 RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.; RT ; RL Submitted (25-FEB-2011) to the INSDC. RL Parasitology, Instituto de Medicina Tropical Pedro Kouri, Autopista Novia RL del Mediodia km 61/2. Aparartado Postal 601, La Habana 10300, Cuba XX DR MD5; a80c4f4afcf6c2b62f8e10c74441073c. XX FH Key Location/Qualifiers FH FT source 1..4689 FT /organism="Trichomonas vaginalis virus 2" FT /host="Trichomonas vaginalis" FT /isolate="C76" FT /mol_type="genomic RNA" FT /country="Cuba" FT /collection_date="Sep-1999" FT /note="genotype: 2" FT /db_xref="taxon:674954" FT CDS join(305..2317,2317..4620) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:G9CIN8" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:G9CIN8" FT /protein_id="AET81014.1" FT /translation="MASTLISSDISATLRIYSEVINNTNTSPPDNPMSDHSNPRLTKVL FT DELSKLPCRNINEFRKMIRNFQPHFIQRRYGYRRNPLPRREDNFLWVVRNRIQSSVETQ FT FLAATNSVPQQSLNLDISLTDESTSITPGSILGSIKMLENSHHFPAFKSMIQIFNARYG FT GSFQDSAHLQSPQYPQLLAYLFGQLIAIKDRVDLFRPSNPLSLADALFGFTLAQNARPR FT FDDHSYAKACQEPLVIPAASNSDCGACGFGQINANQPLTLPLGAWFFVNPETVNYQSFR FT DFLWLSFATHQRMPNQMQNNWPCSLNIVSTCAAPGRQAPHAGELTDERVRLALDTGHRI FT LLSMFNDDEETLRYYQRKGFETMFRPCWFYTEGGLLRKATRYVSGVPLNGLYYGDGATS FT YVVSPIHTDAHPGITAAIESFVDIMVLQAVFSFSGPKVVGAKVNAGQIDAAMVGGPAVA FT EGDGFVYDPLRPAPPLSAFFTEFIHRPAGQRIFQMAMSQIYPSHAPLGIANVINSIHFC FT KTKIVNNKLRATFVRRPPRAPHLKADTAIINRFHDPELAYALGILADGIAPLDGSHEYN FT VLDELDYLFNGGDIRNSFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPV FT TQDAPLDEIYHWRDHGNLTRPYSCHILDSQGLEFADRFQRTVTRKDPCGRQLTPQDMRC FT LPGPQLRAKAGQRHVERINQCGGSVIYPRLSTARACTKSAIDLMTKALAHQLWYLYKSS FT DLLRQLPTMIPHSYKTFLVWLLRIDPHNEKSSIRHFPSQDNHEVITHSLRNLTKEQDFT FT LFPIIDIVQAKGRVNGYGRNLLDGSPLPDFALQQMLLPNTANDVVCAILLLGVVLSMLR FT SPISIIVNISRAICRNDSLLKDLSDFNKMLGLPRIPIANCLTELNTLQGRGVTSSDAKR FT DLTHRRADVNPHVAKISRENLTEAINQIYKEEISRKELPDTFKQDVFTFPLWVKKGAHH FT HPLFGSYDNRLELVENLELDRVLKSQAAVYITQAPKLEHGKTRFIYNCDTVSYIFFDYI FT LNYIESVWSKKHVLLNPDYMNPVIFSTLNYDEFCMLDYTDFNSQHSIESMKQVFLFLFP FT FLLWSMHSILRGCVTSFDNMYINKTHWNSTLPSGHRATTFINSVLNRAYNLPFLQVANA FT FHTGDDVLLCGKADYATLINTVPYELNKTKQSFGPSAEFLRLHKHNDQVSGYAARAISS FT LVSGNWLSFANPLWQGSLLSIMQQNYTRSAWSGLLPYIPVSMKKEVQRRNDLRSRITNG FT LFSGDIVPSGCPCYKSNAAILSAVVPDTVVKAPPTFFDLRTLDILKQTSPWINTASRYM FT DLLEGRHKESDNKNVIYSIQYLPSKMLPMIDVDPADATGLRKRYHGRSHIAHPLPRDGH FT LKEFRFATCRVGPATALRLGGLWPANRINLIKPVYV" FT CDS 305..2440 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:G9CIN9" FT /protein_id="AET81013.1" FT /translation="MASTLISSDISATLRIYSEVINNTNTSPPDNPMSDHSNPRLTKVL FT DELSKLPCRNINEFRKMIRNFQPHFIQRRYGYRRNPLPRREDNFLWVVRNRIQSSVETQ FT FLAATNSVPQQSLNLDISLTDESTSITPGSILGSIKMLENSHHFPAFKSMIQIFNARYG FT GSFQDSAHLQSPQYPQLLAYLFGQLIAIKDRVDLFRPSNPLSLADALFGFTLAQNARPR FT FDDHSYAKACQEPLVIPAASNSDCGACGFGQINANQPLTLPLGAWFFVNPETVNYQSFR FT DFLWLSFATHQRMPNQMQNNWPCSLNIVSTCAAPGRQAPHAGELTDERVRLALDTGHRI FT LLSMFNDDEETLRYYQRKGFETMFRPCWFYTEGGLLRKATRYVSGVPLNGLYYGDGATS FT YVVSPIHTDAHPGITAAIESFVDIMVLQAVFSFSGPKVVGAKVNAGQIDAAMVGGPAVA FT EGDGFVYDPLRPAPPLSAFFTEFIHRPAGQRIFQMAMSQIYPSHAPLGIANVINSIHFC FT KTKIVNNKLRATFVRRPPRAPHLKADTAIINRFHDPELAYALGILADGIAPLDGSHEYN FT VLDELDYLFNGGDIRNSFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPV FT TQDAPLDEIYHWRDHGNLTRPYSCHILDSQGLEFADVSNGRSRGKILVVVNSPLKTCAA FT YQGPSFAPKPGSAMWNE" XX SQ Sequence 4689 BP; 1283 A; 1224 C; 932 G; 1250 T; 0 other; gttgtgtggc ttagaaggag tgaccacctt taaagcgcag gcgtaatcag cctggtcaga 60 aactcctggg caccatcagg agacggatcg gtatcgcgtt ctggatgtca gtgtcaatag 120 ccttgtgcgc catggatacg gggttcacta ttacgcgaga aggtcccccg cgaactctgg 180 actgtttatt cggatttaat acagtactct gaatagctag ccttatgcat atgacgtgtt 240 gtgagagggc ttatttgtgg ctttcatact agtattgtgt gattgtctac atttaattac 300 gataatggct tcgaccctaa tatcgtctga tatttctgcc acattacgca tttatagtga 360 agttatcaac aacacaaata cttcaccacc cgacaatcca atgagtgacc actcaaatcc 420 ccggttaaca aaggttctag atgagttgtc caaattacca tgtcgtaata taaacgaatt 480 tagaaaaatg attagaaatt ttcaaccaca ttttatacaa cgtcgctacg gataccgtcg 540 aaatcctttg cctcgcagag aagataattt cttatgggtc gtaagaaatc gtatccagag 600 ctccgtcgag actcaatttc ttgctgctac aaatagtgtt cctcaacaaa gtcttaatct 660 agacatttct ttaacggatg aatcaacttc tattactcca gggtcaattc ttggctcgat 720 caagatgctc gaaaattctc atcacttccc agcattcaaa agtatgatac agatcttcaa 780 cgctcgttat ggaggctctt ttcaagactc tgcccatctc cagtccccac agtatccaca 840 acttctcgct tacttattcg gccagctaat cgcgattaag gatcgggtcg atctcttcag 900 gccatcaaat ccactttctc tcgctgacgc tttgttcggc ttcacattag ctcaaaacgc 960 tcgcccacgt ttcgacgacc acagttacgc taaagcatgc caagaacccc tcgttattcc 1020 agcagcttct aatagtgact gcggtgcctg cggcttcgga cagatcaacg caaatcaacc 1080 cctcactctc cctcttggcg cttggttttt cgtcaatcca gaaacagtta attatcaatc 1140 attccgagat ttcctctggc tcagcttcgc aacacaccag cgcatgccaa atcaaatgca 1200 gaacaattgg ccgtgttctc tcaacatcgt ttcaacatgt gcggctcctg gtcgtcaagc 1260 ccctcacgcc ggtgaactca ctgatgagag ggtcagactc gcccttgata caggccaccg 1320 cattttgctt tctatgttca atgatgatga agaaactctc cgttattatc aacgcaaagg 1380 attcgaaaca atgttcagac catgctggtt ctacactgaa ggcggcttac tcagaaaggc 1440 taccagatac gtttcaggtg tcccactcaa cggcctatat tatggtgatg gtgcgacctc 1500 atacgttgtc tccccaatcc ataccgatgc gcatcctgga attacagcag ctatcgaatc 1560 cttcgtcgac attatggtct tacaagcagt cttctccttt tccggtccca aagttgtcgg 1620 tgctaaagtc aatgccggcc aaatcgatgc agctatggtc ggcggccccg ctgtcgctga 1680 aggagacggc ttcgtctacg acccactccg tccagcacct ccactttccg cgttctttac 1740 cgaattcatc cacagaccag ccgggcaacg catcttccag atggcgatga gccaaatcta 1800 cccatcacat gctcctctcg gtattgccaa cgtcatcaac tccattcact tctgcaagac 1860 aaagatcgtt aacaacaaat tacgcgccac tttcgttcgt cgcccaccgc gcgcccctca 1920 tctcaaggcc gatactgcta tcatcaaccg cttccacgat ccggaactcg cctacgctct 1980 cggaatcctc gccgatggca ttgctcctct cgatggctcc cacgagtaca atgtccttga 2040 tgaactcgac tacttattca atggtggcga cattcgcaat tccttcggcc tcaacgccct 2100 caacacccga ggtttgggcc aaatcgttca catccggcca aaacgcgagc cgggaaaaag 2160 acctcgccgc ggtttctaca ccacactcga tggacaggtt caccctgtta cacaagatgc 2220 tccactcgat gagatttacc attggcgcga ccatggaaat ctcacacgtc catattcgtg 2280 ccacatcctc gacagtcaag gactcgagtt tgctgacgtt tccaacggac ggtcacgcgg 2340 aaagatcctt gtggtcgtca actcacccct caagacatgc gctgcctacc agggccccag 2400 cttcgcgcca aagccgggca gcgccatgtg gaacgaataa accaatgcgg gggcagcgtc 2460 atctatccgc gcttgagcac tgctcgcgcc tgcaccaagt ctgccattga tttgatgacg 2520 aaggccctcg cacaccaact gtggtaccta tataagtctt cagacttact ccgacagttg 2580 cccaccatga taccacattc ctacaaaaca tttcttgttt ggctactcag aatcgaccct 2640 cacaatgaaa aaagctcaat tcgtcacttc ccaagtcaag acaatcatga agtcattaca 2700 cacagtctaa gaaaccttac taaagaacaa gatttcacac tgtttccaat cattgacata 2760 gtccaagcta agggtcgcgt gaatggttac gggcgaaatc ttctggatgg ttcaccgctg 2820 ccagattttg ccctacaaca gatgctgtta ccaaatactg caaatgatgt agtctgtgca 2880 atcttgctac tcggtgtagt attgtcgatg cttcgcagcc caatctcaat catcgttaac 2940 atttcacgtg ctatatgtcg caatgatagt ttattgaagg atttatctga tttcaataag 3000 atgttaggct taccaaggat acctatagct aactgcttaa cagaattgaa tactttacaa 3060 ggtcgtggag taacttcaag cgatgccaaa agagacttga cccaccgaag ggccgatgtc 3120 aatcctcatg tggcgaaaat aagtagagag aatctcacgg aagcaatcaa tcaaatatac 3180 aaggaagaaa ttagtaggaa ggaacttcct gatacgttca aacaagatgt attcacattt 3240 cctttatggg ttaagaaagg tgctcaccat catccactat ttgggtctta tgacaatcgg 3300 ctggagttag ttgagaatct agagttagac agggtgttaa aatcacaggc tgctgtctat 3360 atcacgcaag cgccgaaact tgaacatggt aagactcgat tcatttacaa ttgcgataca 3420 gtcagttaca ttttttttga ttacattttg aattatatcg agagtgtctg gtctaaaaaa 3480 catgtgctcc tgaatcctga ttacatgaac ccagtcatct tcagtactct taactatgac 3540 gaattctgca tgttagatta cactgacttc aactcacagc actccatcga aagcatgaaa 3600 caggtgtttt tatttctttt tcccttcctg ctgtggtcta tgcactctat tttacgtggg 3660 tgcgtcacgt ctttcgacaa tatgtatatc aacaagactc attggaattc cacactaccg 3720 tcaggacata gagcgacaac attcattaat tctgtcctga acagggctta taatcttcca 3780 tttctacaag tcgctaacgc gttccataca ggcgacgatg tactgttatg cggaaaggca 3840 gactacgcca cacttatcaa cactgtacct tacgaactca acaagactaa gcaatcattc 3900 ggaccctcgg ctgaatttct gcgacttcac aaacacaacg accaagtctc tggttacgcg 3960 gcacgtgcaa ttagcagtct cgtaagcggc aactggttgt cattcgccaa cccactatgg 4020 caagggtcgc tactgtcaat tatgcaacaa aattacacac gatcggcttg gtcaggtctg 4080 ttaccatata ttcctgtatc aatgaagaaa gaagtccagc ggcgaaatga tttgcgttca 4140 cgaattacca acggattgtt ctctggtgat atagttccaa gcggttgccc ttgttataag 4200 tcaaatgcgg caatactaag cgcagtagtt cctgacactg tagtaaaggc tccccccacc 4260 ttttttgact tacgtacatt ggatatccta aagcaaacat caccttggat caatacagcg 4320 tccagatata tggacctcct ggaaggacga cataaggaat ctgacaataa aaatgttata 4380 tatagtatcc aatacctacc atctaagatg ctaccaatga tagatgttga ccctgcagac 4440 gctaccggat tacgaaaacg gtatcacgga cgttctcaca tcgcacaccc actcccacga 4500 gatggtcatc ttaaggaatt tagatttgca acgtgcagag tcggcccggc tactgcgtta 4560 agattaggag ggctttggcc tgcgaataga atcaacctaa tcaagccagt ctacgtttaa 4620 gtaagactga caatttctta cataactact cggttagagt tggtgagtaa tatcaactct 4680 tacgtcaac 4689 //