ID JF436869; SV 1; linear; genomic RNA; STD; VRL; 4657 BP. XX AC JF436869; XX DT 24-NOV-2011 (Rel. 110, Created) DT 16-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Trichomonas vaginalis virus 1 isolate C344, complete genome. XX KW . XX OS Trichomonas vaginalis virus 1 OC Viruses; Riboviria; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4657 RX PUBMED; 22075038. RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.; RT "Genetic characterization of three Cuban Trichomonas vaginalis virus. RT Phylogeny of Totiviridae family"; RL Infect Genet Evol 12(1):113-120(2012). XX RN [2] RP 1-4657 RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.; RT ; RL Submitted (25-FEB-2011) to the INSDC. RL Parasitology, Instituto de Medicina Tropical Pedro Kouri, Autopista Novia RL del Mediodia km 61/2. Aparartado Postal 601, La Habana 10300, Cuba XX DR MD5; 3e332f73f42a151c28b9d2590ba5eea3. XX FH Key Location/Qualifiers FH FT source 1..4657 FT /organism="Trichomonas vaginalis virus 1" FT /host="Trichomonas vaginalis" FT /isolate="C344" FT /mol_type="genomic RNA" FT /country="Cuba" FT /collection_date="Feb-2000" FT /note="genotype: 1" FT /db_xref="taxon:674953" FT CDS join(288..2314,2316..4578) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:G9CIN6" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:G9CIN6" FT /protein_id="AET81012.1" FT /translation="MEASANVLSHDDNVNKSQNVGPSTLPRSDKQGGEKHENSFNSFSN FT DFFFNFLRMSTNTHISDSPGVSFVAKDGTPYSSLTIPSGVGRLTHNVVASAVQLNITGS FT NTLEVDYGFGQDVSRTTGTISIPIFDGEKYKETARALAAIFSKKGMSVDVTSQTVQETL FT KNSDLTIATVAAGYYTALAARLELTKDVSEAAHTIPFVTALSDTFSAALNAQRTRDVIS FT SCLRCPNSRNAQRDIVIGTVLWNNVFVESLSEHNMAVPNPNDISFFIRNNALTSSWWCA FT IWLLNAFLHRLIAPTRIHIFITQGETYHLPPFTDSDVYEAVRFLLAMSKSSRPMPESVE FT SMLYAYGTQMIIQPHSLYTEGGLIRRMIITVPHLPAHGYFVTNSEFSRYMNIAVPDDGR FT SAKDFVIGAGTGLLQIVLAYQAAFSCAGPIALHCHANDAISQGMDRVASIYLEGRYFTI FT PMAVNVATNVAQYTTMVRRDPEYRHTLDRILPRIFGPSTDTVFDFIESGITSSWVSIDA FT RKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVDYLMNAGDLR FT NCPILRTLKAAEREETVTLMCKEKVGSLYAIDGTVRVFKRFETIDLAQLGWTSHGKVMK FT PYAFRPPVIQGMTICSTAYTSTAIDIITTVFGPLRLRVGSLLSKAVRCGPVIPSVKHHF FT NMNYVSILKHNGNEYTFVPGYGWVLQDDYLLNAVKMVGEGDLPPNQLPYDDDLLFTYAK FT ILLYDYISHFPEFRHKNPRLLTSETELQLFPLKENSAARTKANFYARTLWNETTSDKSA FT FKPGTYNDTVAGLLMCQQCALMWSLRKLIINKIISGVCDALTEKVSLTLLKRISDWLKQ FT LGLAYSPIFRLFIELPTLLGRGAIPGDAALDMKHRLTYNPLMTVDVPKTQLHDLIYRLL FT SRNYNNTKISSFEHHLEERLLWSRSGSHYYPDEQIDQLLPPQPTRKEFLDIVTIDYIKQ FT CKPQVFIRQSRKLEHGKERFIYNCDTISYVYFDFVLKLFESGWQDSEAILSPGDYSSEC FT LHAKISGYKYKAMLDYTDFNSQHTIQSMRLIFETMKELLPPEASFALDWCIASFDNMQR FT SDGRKWTATLPSGHRATTFINTVLNWCYTQMVGLKFDSFMCAGDDVILMSQEPISLTPI FT LTSHFKFNPSKQSTGTRGEFLRKHYTEEGVFAYPCRAIPSLVSGNWLSETLRDNTPMVV FT AIQNGIDRLRSRAGLLGVPWSLGLSELVEREGIPEEVGMALLNSHAAGPGLITRDYSSF FT TVTPKPPRITSTLDYTATRYGVQDLCNDVPWKQLTANECNKLPQQIKKMSHRHCSQTKI FT TYKCVYEVFKPSGLPTVLSEVSQSGLSLVWWQAMLKEAMQDYSTKKKDVHMYACNACTS FT SVSGDAFLRATSKMAGVLITSLISSSS" FT CDS 288..2324 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:G9CIN7" FT /protein_id="AET81011.1" FT /translation="MEASANVLSHDDNVNKSQNVGPSTLPRSDKQGGEKHENSFNSFSN FT DFFFNFLRMSTNTHISDSPGVSFVAKDGTPYSSLTIPSGVGRLTHNVVASAVQLNITGS FT NTLEVDYGFGQDVSRTTGTISIPIFDGEKYKETARALAAIFSKKGMSVDVTSQTVQETL FT KNSDLTIATVAAGYYTALAARLELTKDVSEAAHTIPFVTALSDTFSAALNAQRTRDVIS FT SCLRCPNSRNAQRDIVIGTVLWNNVFVESLSEHNMAVPNPNDISFFIRNNALTSSWWCA FT IWLLNAFLHRLIAPTRIHIFITQGETYHLPPFTDSDVYEAVRFLLAMSKSSRPMPESVE FT SMLYAYGTQMIIQPHSLYTEGGLIRRMIITVPHLPAHGYFVTNSEFSRYMNIAVPDDGR FT SAKDFVIGAGTGLLQIVLAYQAAFSCAGPIALHCHANDAISQGMDRVASIYLEGRYFTI FT PMAVNVATNVAQYTTMVRRDPEYRHTLDRILPRIFGPSTDTVFDFIESGITSSWVSIDA FT RKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVDYLMNAGDLR FT NCPILRTLKAAEREETVTLMCKEKVGSLYAIDGTVRVFKRFETIDLAQLGWTSHGKVMK FT PYAFRPPVIQGMTICSTAYTSTAIDIITTVFGPLRLRVGSLFE" XX SQ Sequence 4657 BP; 1360 A; 1138 C; 933 G; 1226 T; 0 other; actcaacatt gctacttcat catgacgaac ccgtgacgta gacacgtaac aagcgtagtg 60 tcctcgacga ttgccatcct cgtgtgaatt ccgggctcgg cttgcactga tggtacctcc 120 tacgaaactt ggagaggctt cggtctcgaa gagcggtaat gtaccctctg cgcctgggac 180 ctaatcgcgt tttgctgtag ctaattcagt agatggaagg attaagcgtc aaacatcttg 240 gttcggcaag tatgtcctta ccagtactct actgagcttg aaaacccatg gaggcttctg 300 ctaatgtgtt atcacatgat gataatgtga ataaatcgca aaatgttgga ccttctactc 360 ttccgaggtc agataaacaa ggaggagaaa aacacgaaaa ttcttttaat tctttttcta 420 atgatttctt ttttaacttc ttacgtatgt caaccaacac gcacatctca gacagtccag 480 gcgtttcttt cgttgctaaa gatggtacac catacagttc actcacaatt ccttcaggtg 540 tcggtcgtct tactcacaat gtagttgcat ctgccgtcca gctcaatatt acgggcagta 600 acacattgga agtagactac ggcttcggcc aagatgtttc aagaaccaca ggcactatct 660 caatccctat ctttgatggt gaaaaataca aagaaacggc ccgcgcatta gccgctatct 720 tcagcaagaa aggcatgtca gtcgacgtca cctcacagac tgtccaagaa actctcaaga 780 actcagacct caccatcgcc actgtcgcag ctggatatta cacagcctta gctgcgcgtc 840 tcgaactaac gaaagacgta agcgaggctg cccacacgat tccattcgtt accgctttat 900 cggatacatt ctcagcagca ctaaatgcac aacgtacaag ggatgtcata tcttcttgct 960 tacgttgtcc aaattccagg aatgctcaac gtgacatcgt aatcggtacg gttttatgga 1020 ataacgtttt tgttgagagc ctctccgaac acaacatggc ggttcccaat ccaaacgaca 1080 tatcattttt cattcggaac aatgctctca catcttcttg gtggtgcgct atttggctcc 1140 tcaatgcatt tcttcacagg ttaatcgcac ctactcgtat ccacatcttc attacacaag 1200 gagaaacata ccacctccct cctttcaccg attcggatgt ctacgaggcc gttcgtttct 1260 tgctcgcaat gtcaaagtca tcacggccaa tgccagagag cgtcgagagt atgttatatg 1320 catacggcac acagatgatc atccaaccac attcgctcta cacagaggga ggcttgatca 1380 gaagaatgat cattacagtt ccacaccttc cagctcatgg ttacttcgtc acgaattccg 1440 aattctcgag atacatgaat atcgctgttc cagacgacgg gcgttcagca aaagacttcg 1500 ttatcggtgc aggaacaggt ctcttacaaa tcgtactggc ttaccaagct gctttcagct 1560 gtgctggacc tattgctctt cactgccatg caaacgatgc tatctcccaa ggtatggaca 1620 gagtcgcaag catctacctt gaaggaagat acttcaccat tccaatggca gttaacgttg 1680 ctactaatgt cgctcaatac actacaatgg tcagacgcga tcctgaatac cgtcacacac 1740 ttgaccggat cttgcctcgc atattcggac catcgactga cacagtcttc gatttcatcg 1800 aatcaggaat tacgtcatct tgggtatcca ttgatgcccg caaacgcaac ggtcgtgcca 1860 gaaagttcag aacagctttc atcaaccgtt tccacgaccc agaattcgca tacatgttcg 1920 gtatcaccgg caacggtatc gagagaatgg aaggaaaagt tacttccaac atcgcccaag 1980 aagtcgatta tctcatgaac gccggcgacc ttcgcaattg cccaattctc cgcacactta 2040 aggcagcaga gagagaagaa acagtcactt tgatgtgcaa ggaaaaggtc ggctcactct 2100 acgccatcga cggaacagtt cgcgtattca aacggttcga aacaatcgat cttgcccagc 2160 ttggctggac ttcacatggt aaggtgatga aaccttatgc atttcgccct ccagtcattc 2220 aaggaatgac catctgcagt acagcgtaca catcaacggc catcgacatc atcacaacag 2280 tctttggtcc cttacgcctc cgcgtaggat ccctttttga gtaaagctgt acgttgtggc 2340 cccgtaatac catccgtcaa gcatcacttc aatatgaatt acgttagtat tctcaaacac 2400 aatggtaacg aatacacttt tgtcccagga tacggatggg tattacagga tgattatttg 2460 ttgaatgccg tcaaaatggt tggagaaggt gatctaccgc ccaatcaatt accttatgac 2520 gatgatcttt tatttacata cgcaaaaatt ttactttacg attacatatc tcattttcca 2580 gaattcagac acaagaatcc acgcttatta acaagtgaaa cagaactaca actcttcccg 2640 ctcaaggaaa actcagctgc caggactaaa gcaaatttct acgctaggac actatggaac 2700 gaaacaactt cggacaagtc agctttcaaa ccaggaactt acaatgacac agtcgcaggt 2760 ctattaatgt gccaacaatg tgctttgatg tggtctctac gcaagttaat tatcaacaag 2820 attattagcg gtgtttgtga tgcattaacc gaaaaggtct cactcaccct attaaaacgg 2880 atttctgatt ggttaaaaca actcgggtta gcctactcac ctatattccg tcttttcatt 2940 gaactcccta ctctattagg acgcggagca atcccaggcg atgctgcact agacatgaag 3000 cacagattaa cttacaaccc attgatgaca gtcgatgttc caaagacaca actacacgac 3060 ttaatttaca gacttctatc acgtaactac aacaatacaa aaattagcag tttcgagcac 3120 cacctagaag aacgtttact ttggtcaagg tctggaagtc actactaccc tgatgaacaa 3180 atcgatcagt tacttccccc acaacctacc agaaaagagt tcttagatat agtaacaata 3240 gactacatca aacaatgcaa acctcaagtt ttcatcagac agtcacgcaa actagagcac 3300 ggcaaggagc gattcattta caattgtgac acgatctcat atgtctattt tgattttgtc 3360 ctgaagctct tcgagtcagg atggcaagat agtgaagcaa tactgtcacc aggcgattac 3420 tcaagtgaat gtctccatgc taaaatctct ggttataagt acaaagctat gttggactac 3480 acagatttca attcgcaaca cacaatacaa agcatgcgtt tgatcttcga aaccatgaaa 3540 gagctactcc cacctgaagc atcttttgct cttgactggt gtatcgcctc gtttgacaac 3600 atgcaaaggt ctgatggtcg caagtggacc gccactctcc caagtggaca tcgtgctaca 3660 acttttatca atacagtatt aaattggtgt tacacacaga tggtcggtct caaattcgac 3720 agctttatgt gcgccggtga tgatgtcatc ttaatgtctc aagagcctat atcattaact 3780 ccgattctta catcacactt caagttcaat cctagtaagc agagtacagg tactagaggt 3840 gagttcttac gcaagcatta cactgaagaa ggcgtgtttg catacccatg tcgagcaatc 3900 cccagcttag taagtggaaa ttggttaagc gaaacactaa gagataacac cccaatggtg 3960 gtcgcaatac agaacggaat cgacagatta cgtagtagag caggtttact tggagttcct 4020 tggagtttag gcctctcaga gctcgttgag agagagggca tacctgagga agtcggcatg 4080 gctttactga attcacacgc ggcgggaccg ggtctcatca cacgcgatta cagttcattc 4140 acagttacac caaaaccacc taggataact agcacacttg attacacagc gacccgttat 4200 ggtgtccaag acttatgtaa tgacgtgcca tggaaacaac tcacagcaaa tgagtgcaat 4260 aagttaccac agcaaattaa gaaaatgagc cacaggcatt gtagccagac aaagataacc 4320 tacaaatgtg tctacgaagt ttttaaacct agtggacttc ctacggtgtt atccgaggtc 4380 agccagtcag gcttgtcgct ggtgtggtgg caagcaatgc ttaaggaagc aatgcaggac 4440 tactctacaa agaagaagga tgtacatatg tacgcttgta acgcatgtac aagctccgtt 4500 agcggagatg cgtttttacg agcgacatca aaaatggctg gtgttttaat cactagcttg 4560 atttcttctt cttcataacg tacagtagaa aagtctctag agttgctcaa gacttataat 4620 gagccagttt ggtctcacta taccttctcc attttac 4657 //