ID JF430080; SV 1; linear; genomic RNA; STD; VRL; 6435 BP. XX AC JF430080; XX DT 26-JUL-2011 (Rel. 109, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Potato virus X strain ptDel-9, complete genome. XX KW . XX OS Potato virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6435 RX AGRICOLA; IND44684300. RA Mandal B., Kumar A., Rani P., Jain R.K.; RT "Complete Genome Sequence, Phylogenetic Relationships and Molecular RT Diagnosis of an Indian Isolate of Potato Virus X"; RL J. Phytopathol. 160(1):1-5(2012). XX RN [2] RP 1-6435 RA Kumar A., Mandal B., Jain R.K.; RT ; RL Submitted (24-FEB-2011) to the INSDC. RL Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New RL Delhi, Delhi 110012, India XX DR MD5; 39f8fd13d53180c570ac94d61ee77fd9. DR EuropePMC; PMC4188204; 25674598. DR EuropePMC; PMC5377869; 28466060. DR RFAM; RF00184; PVX_3. XX FH Key Location/Qualifiers FH FT source 1..6435 FT /organism="Potato virus X" FT /host="potato" FT /strain="ptDel-9" FT /mol_type="genomic RNA" FT /country="India:New Delhi" FT /isolation_source="potato from IARI field" FT /collection_date="Jan-2009" FT /db_xref="taxon:12183" FT 5'UTR 1..84 FT gene 85..4455 FT /gene="RdRp" FT CDS 85..4455 FT /codon_start=1 FT /gene="RdRp" FT /product="replicase" FT /note="RNA-dependent RNA polymerase" FT /db_xref="GOA:G1ARD7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G1ARD7" FT /protein_id="AEK69528.1" FT /translation="MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTV FT EAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPRKLNYM FT RRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSYIVETFQ FT NCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFSHLQ FT WLKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVR FT TFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKS FT SDLDKYSAVELVYLXSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFG FT LEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDLL FT DCFTRMPAYAVNAEEDLAAIRKTPEMDGCQEVKEPAGDRNQYSNPAETFLNKLHRKHSR FT EVKHQAVKKAKRLAEIQESMRAEGEAESNGMSGGMGAIPSNAELPSTSGARQGLVLPTT FT KPVPARWEDASFTDSSVEDEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALE FT IQRDRSGTMIMPITEMVSGLEKEDFPEGTPKELARELLAMNRSPATIPLDLLRARDYGS FT DVKNKRIGAITKTQATSWGEYLTGKIESLTERKVAACVIHGAGGSGKSHAIQKALREIG FT KGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIE FT ALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD FT LANMLGVYXERTGVTEISMSAKFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTK FT PKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVV FT REQALREYEPAEAEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHSESHGHSNC FT VQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKA FT MGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLVNGTVRQGPDFDENKIRVFLRSQWV FT TEVXKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMS FT AWALNNWNFGRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQI FT FLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHSF FT HRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKC FT QDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPRLRNFL" FT gene 4486..5166 FT /gene="TGB1" FT CDS 4486..5166 FT /codon_start=1 FT /gene="TGB1" FT /product="triple gene block protein 1" FT /note="movement protein" FT /db_xref="GOA:G1ARD8" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:G1ARD8" FT /protein_id="AEK69529.1" FT /translation="MDILIISLKSLGYSRTHKSLDSGPLVVHAVAGAGKSTALRKLILR FT HPTFTVHTLGVPDKVSIRTRGIQKPGPIPEGNFAILDEYTLDNTTRDSYQALFADPYQA FT PEFSLEPHFYLETSFRVPRKVADLIAGCGFDFETNSQEEGHLEITGIFKGPLLGKVIAI FT DEESETTLSRHGVEFVKPCQVTGLEFKVVTIVSAAPIEEIGQSTAFYNAITRSKGLTYV FT RAGT" FT gene 5147..5494 FT /gene="TGB2" FT CDS 5147..5494 FT /codon_start=1 FT /gene="TGB2" FT /product="triple gene block protein 2" FT /note="movement protein" FT /db_xref="GOA:Q77RX1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q77RX1" FT /protein_id="AEK69530.1" FT /translation="MSAQGHRLTAPVNSEKVYIVLGLSFALVSITFLLSRNSLPHVGDN FT IHSLPHGGAYRDGTKAILYNSPNLGSRVSLHNGKNAAFAAVLLLTLLIYGSKYISQRNH FT TCACGNNHSSH" FT gene 5427..5639 FT /gene="TGB3" FT CDS 5427..5639 FT /codon_start=1 FT /gene="TGB3" FT /product="triple gene block protein 3" FT /note="movement protein" FT /db_xref="GOA:G1ARE0" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:G1ARE0" FT /protein_id="AEK69531.1" FT /translation="MEANTYLNAIILVLVVTIIAVISTSLVKTEPCVIKITGESITVLA FT CKLDAETIRAIADLKPLSVERLSFH" FT gene 5650..6363 FT /gene="CP" FT CDS 5650..6363 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q77LU0" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q77LU0" FT /protein_id="AEK69532.1" FT /translation="MSAPASTTQATGSTTSTTTKTAGATPATASGLFTIPDGDFFSTAR FT AIVASNAVATNEDLSKIEAIWKDMKVPTDTMAQAAWDLVRHCADVGSSAQTEMIDTGPY FT SNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFD FT FFNGVTNPAAIMPKEGLIRPPSEAEMNAAQTAAFVKITKARAQSNDFASLDAAVTRGRI FT TGTTTAEAVVTLPPP" FT 3'UTR 6364..6435 XX SQ Sequence 6435 BP; 1965 A; 1529 C; 1483 G; 1455 T; 3 other; gaaaactaaa ccatacacca ccaacacaac caaacccacc acgcccaatt gttacacacc 60 cgcttgaaaa agcaagtcta acagatggcc aaagtgcgcg aggtttacca atcctttaca 120 gactccacca caaaaactct catccaagat gaggcttata gaaatattcg tcccatcatg 180 gaaaaacaca aactagctaa cccgtacgct caaacggttg aagcggctaa tgatctagag 240 gggttcggca tagccaccaa tccctatagc attgaattgc atacacatgc agccgctaag 300 accatagaga acaaacttct agaggtgctt ggttccatcc taccacaaga acctgttaca 360 tttatgttcc ttaaacccag gaagttaaac tacatgagaa gaaacccgcg gattaaggac 420 attttccaca atgttgctat tgaaccgaga gacgtagcaa ggtaccccaa ggaaacaata 480 attgacaaac ttacagagat cacaacggac acagcataca ttagtgatac tctgcacttc 540 ttggatccga gctacatagt ggagacattc caaaactgcc caaaactgca aacattgtat 600 gcgactttag ttctccccgt tgaggcagcc ttcaaaatgg aaagcactca cccgaacata 660 tacagcctca aatacttcgg agacggtttc cagtacatac caggtaatca tggtggtgga 720 gcataccatc atgaattttc tcatttacaa tggctcaaag tgggaaagat caagtggagg 780 gaccccaagg atagctttct cggacatctc aattacacga ctgagcaggt tgagatgcac 840 acagtgacgg tacagttgca ggaatcgttc gcggcaaacc acttgtactg catcaggaga 900 ggagacttac tcacaccgga ggtgcgcact ttcggccaac ctgacaggta cgtgattcca 960 ccacagatct ttctcccgaa agttcacaac tgcaagaagc cgattcttaa gaaaaccatg 1020 atgcagctct tcttgtatgt tagaacagtc aaggtcgcaa aaaattgtga catttttgcc 1080 aaagtcagac aattaattaa atcatctgac ttggacaaat attctgctgt ggaactggtt 1140 tacttantaa gctatatgga gttccttgcc gatctacaag ccaccacctg cttctcagac 1200 acactttctg gtggcttgct aacaaagacc cttgcaccgg tgagggcttg gatacaagag 1260 aaaaagatgc agctatttgg tcttgaggac tacgcgaagt tagtcaaagc agttgatttc 1320 cacccagtgg atttttcttt taaggtggaa acttgggact tcagattcca cccattgcaa 1380 gcgtggaaag ccttccgacc aagggaagtg tctgatgtag aggagatgga aagtttgttc 1440 tcagatgggg acctgctcga ttgcttcaca agaatgccag cttacgcagt aaacgcagag 1500 gaagatttag ctgcaatcag gaaaacgccg gagatggatg gctgtcaaga agttaaagaa 1560 cctgcaggag acagaaatca atactcaaac cctgcagaaa ctttcctcaa caagctccac 1620 aggaaacaca gtagggaggt gaaacatcaa gccgtaaaga aagctaaacg cctagctgaa 1680 atccaggagt ccatgagagc tgaaggtgag gccgaatcaa atgggatgag cgggggcatg 1740 ggagcaatac ctagcaatgc cgaacttccc agcacgagtg gtgccagaca aggactcgta 1800 ctcccaacca ctaaacctgt tcctgcaagg tgggaagatg cttcattcac agattctagt 1860 gtggaagatg agcaggtgaa actccccgga aaagaagccg ttgagacagc aactcaacaa 1920 gtcatcgaag gactcccttg gaaacactgg attcctcaac taaatgctgt tggattcaag 1980 gcgctggaga ttcagaggga taggagtgga acaatgatca tgcccatcac agaaatggtc 2040 tccgggttgg aaaaagagga cttcccggaa ggaactccaa aagagttggc acgagaattg 2100 ctcgccatga atagaagccc tgccaccatc cctctggacc tgcttagagc cagagactac 2160 ggcagtgatg tgaagaacaa gagaattggt gccatcacaa agacacaagc aacaagttgg 2220 ggcgagtacc taacagggaa aatagaaagc ctgactgaga ggaaagttgc ggcctgcgtc 2280 attcatggag ctggaggctc tgggaaaagt catgccatcc agaaggcatt gagagaaatt 2340 ggcaagggct cagacatcac tgtagtcctg ccgaccaatg aactgcgact agattggagt 2400 aagaaagtgc ccaacactga accatatatg ttcaagacct atgaaaaggc gttaattggg 2460 ggaacaggca gtatagtcat ctttgacgat tactcaaaac ttcctcccgg ttacatagaa 2520 gccttaatct gtttctactc caaaatcaag ctagtcattc taacaggaga tagcagacag 2580 agcgtctacc atgaaactgc tgaggacgcc tccatcaggc atttgggacc ggcgacagag 2640 tacttctcaa aatactgccg atactatctt aatgctacac accgcaacaa gaaagacctt 2700 gcaaacatgc ttggtgtata cagngagaga acgggagtca ccgaaatcag catgagcgcc 2760 aagttcttag aaggaatccc aactttagta ccctcggatg agaagaggag gctgtacatg 2820 ggcactggga ggaatgacac gttcacatac gctggatgtc aggggctaac taagccgaag 2880 gtacagatag tgttggacca caacacccaa gtgtgtagcg cgaatgtgat gtacacggca 2940 ctttctagag ccaccgacag gattcacttc gtgaatacaa gtgcaaactc ttcggccttc 3000 tgggaaaagt tagacagcac cccctatctc aagactttcc tatcagtggt gagagaacaa 3060 gcgctcaggg agtacgagcc ggcagaggca gagccaattc gagagcctga gccccagaca 3120 cacatgtgtg tcgagaatga ggagtccgtg ctagaagagt acaaagagga actcttggaa 3180 aagttcgaca gagagatcca ctctgaatcc catggtcatt caaactgtgt ccaaactgaa 3240 gacacaacca ttcagttgtt ttcgcatcaa caagcaaaag atgagaccct cctctgggca 3300 actatagatg cgcggctcaa gaccagcaat caagaaacaa acttccgaga attcttgagc 3360 aagaaggaca ttggggacgt tctgtttctg aactaccaaa aagctatggg tttgcccaaa 3420 gagcgtatcc ccttttccca agaggtctgg gaagcttgtg cccacgaagt acaaagcaag 3480 tacctcagca agtcaaagtg caacttagtc aatgggactg tgagacaagg cccagacttt 3540 gatgaaaaca agattagggt attcctcagg tcgcagtggg tcacagaggt gganaagcta 3600 ggtctaccca agattaagcc aggtcaaacc atagcagctt tttatcagca gactgtgatg 3660 ctttttggaa ctatggccag gtacatgcga tggttcagac aggctttcca gccaaaagaa 3720 gtcttcataa actgtgagac tacgccagaa gacatgtctg catgggcctt gaacaactgg 3780 aactttggca gacctagctt ggctaatgac tatacagcct tcgaccagtc tcaggatgga 3840 gctatgctgc aatttgaggt gctcaaagcc aagcaccact gcataccaga ggaaatcatc 3900 caagcataca tagacattaa gaccaatgca cagattttcc taggcacatt gtcaatcatg 3960 cgcctgactg gtgaaggtcc cacttttgat gcaaacactg agtgcaacat agcgtacacc 4020 catacaaagt ttgacatccc agccggaact gctcaagtgt atgcaggaga cgactcagca 4080 ctagattgcg ttccagaagt gaagcatagt ttccacaggc ttgaagacaa attactcctc 4140 aagtcaaagc ccgtaatcac gcagcaaaag aaaggcagtt ggcctgaatt ttgtggttgg 4200 ctgattacac caaaaggggt aatgaaagac ccaattaagc tccatgttag cttaaaattg 4260 gccgaagcta agggtgaact caagaaatgt caagattcct atgaaattga tctgagttat 4320 gcctatgacc acaaggactc tctgcatgac ttgttcgatg agaaacagtg tcaggcacat 4380 acacttactt gcaggacact aatcaagtca gggagaggca ctgtctcact tccccgcctc 4440 aggaactttc tttaaccgtt aagttacctt agagatttga ataagatgga tattctcatc 4500 attagtttga aaagtttagg ttattctagg actcataaat ctttagattc aggacctttg 4560 gtagtacatg cagtagccgg agccggtaag tctacagccc taaggaagtt gatcctcaga 4620 cacccaacat tcactgtgca tactctcggt gtccctgaca aggtgagtat cagaactaga 4680 ggcatacaga agccaggacc cattcctgag ggcaatttcg cgatcctcga tgagtatact 4740 ttggacaaca ccacaaggga ctcataccag gcactttttg ctgatcctta tcaggcacct 4800 gagtttagtc tagagcccca cttctacttg gaaacctcat ttcgagttcc gaggaaagtg 4860 gcagatttga tagcaggttg tggcttcgat tttgagacca actcacagga agaagggcac 4920 ttagagatca ctggtatatt caaagggccc ctacttggga aggtgatagc cattgacgag 4980 gagtctgaga caacactgtc caggcatggt gttgagtttg ttaagccctg ccaagtgact 5040 ggacttgagt tcaaagtagt cactattgtg tccgcagcac caatagagga aattggccag 5100 tccacagctt tttacaacgc catcaccagg tcaaagggat tgacatatgt ccgcgcaggg 5160 acatagactg accgctccgg tcaattctga aaaagtgtac atagtattag gtctatcatt 5220 tgctttagtt tcaattacct ttctgctttc tagaaatagt ttaccccacg tcggcgataa 5280 cattcacagc ctgccacacg gaggagctta cagagacggc accaaagcaa tcttgtacaa 5340 ctccccaaat ctagggtcac gagtgagtct acacaacgga aagaacgcag catttgctgc 5400 cgttttgcta ctgactttac tgatttatgg aagcaaatac atatctcaac gcaatcatac 5460 ttgtgcttgt ggtaacaatc atagcagtca ttagtacttc cttagtgaag actgaacctt 5520 gtgtcatcaa gattaccgga gaatcaatca cagtgttggc ttgcaaatta gatgcagaaa 5580 ccatcagagc cattgccgat ctcaagccac tctccgttga acggttaagt ttccattgat 5640 actcgaaaga tgtcagcacc agctagcaca acacaggcca cagggtcaac tacctcaact 5700 accacaaaaa ctgcaggcgc aactcctgcc acagcttcag gactgttcac catcccggat 5760 ggggatttct ttagcacagc ccgtgctata gtagccagta atgccgttgc gacaaatgag 5820 gacctcagca agattgaggc tatctggaag gacatgaagg tgcccacaga cactatggca 5880 caggctgctt gggacttagt cagacactgc gctgatgtgg gctcatctgc tcaaacagaa 5940 atgatagata caggtcccta ttccaatggc atcagcagag ccagactggc agcagcaatc 6000 aaagaggtgt gcacactcag gcaattttgc atgaagtatg ccccagtggt atggaactgg 6060 atgctgacta acaacagtcc gcctgctaac tggcaagcac aaggtttcaa gcctgagcac 6120 aaatttgctg cattcgactt cttcaatgga gtcaccaacc cagctgccat catgcccaaa 6180 gaggggctca tccggccacc gtctgaggct gaaatgaatg ctgcccaaac tgctgccttt 6240 gtgaagatta cgaaggccag ggcacaatcc aacgactttg ctagcctaga tgcagctgtt 6300 actcgaggtc gtatcactgg aacaacaacc gctgaggctg ttgtcactct cccaccacca 6360 taactacgtc tacataaccg acgcctaccc cagtttcata gtattttctg gtttgattgt 6420 atgaataata taaat 6435 //