ID JF429835; SV 1; linear; genomic DNA; STD; VRL; 5177 BP. XX AC JF429835; XX DT 19-SEP-2011 (Rel. 110, Created) DT 19-SEP-2011 (Rel. 110, Last updated, Version 1) XX DE Porcine bocavirus 4-1 strain SH17N-1, complete genome. XX KW . XX OS Porcine bocavirus 4-1 OC Viruses; Parvoviridae; Parvovirinae; Bocaparvovirus. XX RN [1] RP 1-5177 RX DOI; 10.1099/vir.0.033688-0. RX PUBMED; 21632566. RA Lau S.K., Woo P.C., Yip C.C., Li K.S., Fu C.T., Huang Y., Chan K.H., RA Yuen K.Y.; RT "Co-existence of multiple strains of two novel porcine bocaviruses in the RT same pig, a previously undescribed phenomenon in members of the family RT Parvoviridae, and evidence for inter- and intra-host genetic diversity and RT recombination"; RL J. Gen. Virol. 92(Pt 9):2047-2059(2011). XX RN [2] RP 1-5177 RA Lau S.K.P., Woo P.C.Y., Yip C.C.Y., Li K.S.M., Au W.K., Huang Y., RA Fu C.T.Y., Tsang T.H.F., Chan K.H., Yuen K.Y.; RT ; RL Submitted (23-FEB-2011) to the INSDC. RL Microbiology, The University of Hong Kong, University Pathology Building, RL Queen Mary Hospital, Pokfulam Road, Hong Kong, China XX DR MD5; 9051ae370dbaee3f8ee113f7f2a02213. DR EuropePMC; PMC3838256; 24109231. DR EuropePMC; PMC3907790; 23225112. DR EuropePMC; PMC3950361; 24701194. DR EuropePMC; PMC4512980; 26217547. XX FH Key Location/Qualifiers FH FT source 1..5177 FT /organism="Porcine bocavirus 4-1" FT /host="pig" FT /strain="SH17N-1" FT /mol_type="genomic DNA" FT /country="Hong Kong" FT /collection_date="22-Mar-2007" FT /db_xref="taxon:1084717" FT gene 232..2235 FT /gene="NS1" FT CDS 232..2235 FT /codon_start=1 FT /gene="NS1" FT /product="NS1" FT /db_xref="GOA:G3EZE5" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G3EZE5" FT /protein_id="AEO37421.1" FT /translation="MASLGVGLSDQEWLGYWHGAITGFKNPSFSYVIRIDLKDWRSSER FT AIMDIFSKDLPAIIDDIVDSEKEMLLCDLNYDWKGSLSMKLKNQHSLGQVLCEAGDIAV FT KRLFQLKQQNHNPVYSCFSQAEIGDTYMHVHLVCGGDGLTKCNAKKCTWVLAKYFWNYM FT LDLWKHYESCHDPTNMQYAVSVQLRVLCERVKAHQDATVTCLTYRDRHNESHAQRIDAS FT SFITNYLLPKNRSLCTWLGPDICTPSVAQFETNKTYMCSHIDRQPITHYLRKALYDRLV FT MNSAEETGEPVHKAARWSDLPEVGENSLARQNTATRPTKLTRKQHVMLDTLQRCQEEFI FT CTKEELTMLHPDLVIMFESTPSGSRTLEEVLEMHRVRVTRTETALSYVRRQFPDNKFIK FT PENKVVRLLNIQGYNAIQVGHWVATVLSKKAGKQNTICFFGPASTGKTNLAKAIANAVK FT VYGCVNHLNKSFVFNDCQNKLLCWWEEAVMHNDWVEPAKCLMGGTSFRVDRKHKDSAEQ FT PQTPLILSTNHDIYTVVGGNTVSTVHEKPIRDRVVQFNFMKTLPQNFGEISVADVADWL FT GWCAEDFDCSLDGFKKEWELDRVPNSFPLASYCDGHLQDFVLYAQGPCCRCGGYLPHTT FT TSDGDWSEPAAEGMPWRMRDRETPIGRGGMCS" FT gene 2360..3040 FT /gene="NP1" FT CDS 2360..3040 FT /codon_start=1 FT /gene="NP1" FT /product="NP1" FT /db_xref="InterPro:IPR021075" FT /db_xref="UniProtKB/TrEMBL:G3EZE6" FT /protein_id="AEO37422.1" FT /translation="MSQRFSDTTSRSGKSNLRFSPYSTIQARERRVNERSTAEREHGTS FT SRDTAEMEARPGSSSQSTESYGRGRKGSSTPGSGSAVASSWKSRKMAKRANPAVVFSEH FT KKREGIGFDFCGFYYHSTRIAAKGTRYIFDVAKRDFQAVARGNCITWDQHRELLFTYKR FT CLDTMYRSMMYHFRFTECQKCLYWDDFYRQHLAGVTPPETVPPSSVELTDVEMLEAVES FT MNES" FT gene 3030..5084 FT /gene="VP1" FT CDS 3030..5084 FT /codon_start=1 FT /gene="VP1" FT /product="VP1" FT /db_xref="GOA:G3EZE7" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:G3EZE7" FT /protein_id="AEO37423.1" FT /translation="MSLKRGQFRGLLFPGYNYLGPFNPLENGDPVNKADEAAKKHDQAY FT NNYINKGLNPYLKFNKGDQDFIDSLQSDSSVGGNFARAVFHLKKQIAPALNEPKDTGEP FT PAKKDKRAGNKRHLYFARLNKGAKKAKADPNNMDGDMGDNEQGAGEAPAAEGGARSGGG FT GGAIGGGGGGGNHGVGISTGGWIGGSILGKNKIITRNTRQWVCTIRDSHRYKQYTQWRQ FT GNTNVKMQGYTTPWNMFNFNQYSSHFNPNEWQWLVNRASRFRPVRMEVKIYNLQIKQES FT TQDTTAQYTNDLTAGLHVLCDGEHAFPWTQLPWDQGCMPELPHDVWKLQQYAYITVAPY FT AQDTTDDGDELDIRGGVPMYLLEETDHAVIRTGESITFHHTFDCGWVDNTRSSVMPQAA FT CINPLVDSRLVGVWLNSTNNGTNENQMRPYQKHGPWWPGPGYRDNRNTSDSGTQGNTVL FT GPYISVWKPDGIVYDGSHVRSGVATGPYVGGQSSDITTGNSHNNANHLRFTPGDGPGGA FT DQHNFFIRRSSVHTGTRDQALYKATGNSSEEVKNVYMMPNQMWDSAPISRYNPIWVKVP FT RVDRHTLLDTDDGTLPMTHPPGTIYVKLANIPTPNGTGHLNIYATGQVSCEIEWEYEEH FT FNKNWRPERRIDANKMRADVYKINEQGGYDLPQSYYETMPTRWGQEKVL" FT gene 3438..5084 FT /gene="VP2" FT CDS 3438..5084 FT /codon_start=1 FT /gene="VP2" FT /product="VP2" FT /db_xref="GOA:G3EZE8" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:G3EZE8" FT /protein_id="AEO37424.1" FT /translation="MDGDMGDNEQGAGEAPAAEGGARSGGGGGAIGGGGGGGNHGVGIS FT TGGWIGGSILGKNKIITRNTRQWVCTIRDSHRYKQYTQWRQGNTNVKMQGYTTPWNMFN FT FNQYSSHFNPNEWQWLVNRASRFRPVRMEVKIYNLQIKQESTQDTTAQYTNDLTAGLHV FT LCDGEHAFPWTQLPWDQGCMPELPHDVWKLQQYAYITVAPYAQDTTDDGDELDIRGGVP FT MYLLEETDHAVIRTGESITFHHTFDCGWVDNTRSSVMPQAACINPLVDSRLVGVWLNST FT NNGTNENQMRPYQKHGPWWPGPGYRDNRNTSDSGTQGNTVLGPYISVWKPDGIVYDGSH FT VRSGVATGPYVGGQSSDITTGNSHNNANHLRFTPGDGPGGADQHNFFIRRSSVHTGTRD FT QALYKATGNSSEEVKNVYMMPNQMWDSAPISRYNPIWVKVPRVDRHTLLDTDDGTLPMT FT HPPGTIYVKLANIPTPNGTGHLNIYATGQVSCEIEWEYEEHFNKNWRPERRIDANKMRA FT DVYKINEQGGYDLPQSYYETMPTRWGQEKVL" XX SQ Sequence 5177 BP; 1405 A; 1273 C; 1385 G; 1114 T; 0 other; ggatatgccg tcaagagacc tgattgggca ggaggggcta tataaggagg gaactaggaa 60 gagagagctc attcttcggc gagacacgga cctgtgcaca tcgctgaatg aagagaccta 120 tttggcagca catcatctga tgtacattct gcctgaaaag aggctacagt ctgagctcat 180 cgctccgcgg gagaagacag ctccggcaag tatcctctta tatctgctgg catggcttct 240 cttggagttg ggctgtctga tcaggaatgg cttggttatt ggcacggagc tattactggt 300 ttcaagaatc ccagctttag ttatgtcatc agaattgatc ttaaggattg gagaagctct 360 gagcgtgcca ttatggacat tttttctaaa gatctaccgg ccatcattga tgacattgta 420 gattctgaaa aggagatgtt actctgcgat ctcaattatg actggaaggg cagtctgagc 480 atgaagctca agaatcagca cagtctcggt caggtcctct gtgaggctgg ggacatcgcc 540 gtcaaacggc tgttccagtt gaagcagcag aatcacaatc cggtctacag ctgcttctct 600 caggcagaga taggagacac ctatatgcac gtccatctgg tgtgcggagg agacgggctg 660 accaagtgca acgctaaaaa atgcacttgg gttctggcta aatatttctg gaattatatg 720 ctcgatctct ggaagcacta cgagagctgc cacgatccaa ccaatatgca gtacgccgtc 780 tcggtgcaac tgcgcgtgct ctgtgagagg gtcaaggctc atcaggacgc gaccgttacc 840 tgtctgacct atcgagacag gcacaacgag tctcacgctc agcgcatcga cgcttccagc 900 ttcatcacca actatctctt gccgaagaat agatcgctgt gtacctggct gggtccagat 960 atctgcactc cgagcgtagc tcagtttgag accaacaaga cctacatgtg cagtcacatt 1020 gacaggcagc cgatcactca ctatctcagg aaggctctct atgaccggct ggtcatgaac 1080 agcgccgagg agacagggga acctgtccat aaggcggcgc gctggagcga tctgcctgag 1140 gtgggtgaga actcgctggc tagacagaat acagccacta ggccgactaa gctgacgaga 1200 aagcaacatg tcatgttaga tacactgcag agatgtcagg aggagtttat ctgtaccaag 1260 gaagagttaa ctatgctaca tccagatcta gtgattatgt ttgagagtac tccgagcggg 1320 tctcgaacac tcgaagaggt gctcgagatg catcgggtga gggtgactag gacagagaca 1380 gctctgagtt atgtcaggcg gcaatttcca gacaacaagt ttatcaagcc ggagaataag 1440 gtagtcaggc ttttaaacat ccagggctac aacgctatcc aggtcggcca ctgggtggcg 1500 accgtgcttt ctaagaaggc cgggaaacaa aacaccatct gtttctttgg tccggcaagt 1560 acggggaaga ctaatctagc taaagctatc gcgaacgcgg tgaaagtgta tggttgtgtc 1620 aatcacctca acaagagttt tgtctttaac gattgccaga acaaactctt gtgctggtgg 1680 gaggaggcgg tgatgcacaa cgattgggtg gaaccagcca agtgtctgat gggagggacg 1740 agcttcaggg tagataggaa acacaaggat agcgcggagc agcctcaaac acctttaatc 1800 ctgagtacca atcatgacat ttacaccgtg gtgggtggga acactgtctc taccgttcat 1860 gagaagccga tccgggatag agtagttcag ttcaatttca tgaaaacgct gcctcagaac 1920 tttggagaga tttcagtggc tgatgtggct gactggctcg gctggtgcgc cgaggacttt 1980 gactgcagtc tcgacgggtt caagaaggaa tgggagcttg accgtgttcc caacagtttt 2040 cctctagcga gctactgtga tggtcatttg caggattttg tgctctacgc tcaaggacct 2100 tgttgtcgct gtggtggtta cctgcctcac actactacca gcgacggtga ttggagcgag 2160 cctgctgctg aaggtatgcc ttggcgcatg cgcgataggg agacacctat cgggcgggga 2220 gggatgtgct catgatctgt tctttgtctt tcagagccta ctccggcaga gtctccaaag 2280 aaagtgaccg ctactcaggg cactcagacc gacgaacctt cttcgagtga gtacatcgac 2340 tggagcagtc aaccagggaa tgagtcagag attctccgat acaacatctc gcagcgggaa 2400 gagcaacctc cggttctctc cttactcgac gatccaggcg agggaacgtc gagtcaacga 2460 gaggtctaca gccgagaggg agcatggaac gtcttcgcgg gacacagcgg agatggaggc 2520 cagaccggga tcctcgtcgc agtcgaccga gtcctacggg agggggagga agggatcatc 2580 gaccccgggt tctggctcag ctgtggcgag ctcttggaag agccgcaaga tggctaagag 2640 agctaatccg gccgtcgtct tcagtgagca caaaaagagg gaggggatcg gtttcgactt 2700 ctgtgggttt tactatcact ccacaagaat tgcagccaag ggaactaggt acatttttga 2760 cgtggcgaaa agggactttc aggctgtcgc ccggggaaat tgcattacct gggaccaaca 2820 tagagaatta ctatttactt ataaacgatg tctggacact atgtaccgat ctatgatgta 2880 tcactttaga ttcactgagt gtcagaaatg tctgtactgg gatgatttct atagacagca 2940 cttggcgggt gtcactcctc ctgaaactgt tcctccttct tctgtagagc tcacagacgt 3000 ggaaatgtta gaagctgttg aatcaatgaa tgagtcttaa gcgcggtcag ttccgcgggc 3060 ttctgtttcc tggttataat tatttgggtc cttttaatcc tttggaaaac ggtgatcctg 3120 tcaataaagc cgacgaggcc gcaaaaaaac acgatcaagc ctataataat tatatcaata 3180 aaggtttaaa tccctacctg aaatttaata aaggtgatca agactttatc gactctttgc 3240 agtctgactc ttctgtgggc ggtaactttg cgcgtgccgt ctttcatttg aaaaaacaaa 3300 ttgcgcctgc gctcaacgag cctaaagaca cgggggaacc tccggccaag aaggacaaac 3360 gcgcgggcaa taaacgtcac ctatattttg cgcgcttaaa taaaggcgcg aaaaaagcca 3420 aagctgatcc taacaacatg gatggtgata tgggagataa cgaacaggga gcgggtgagg 3480 cgccagctgc tgaaggcgga gcaagatctg gtggcggcgg tggcgcgatt ggtggaggag 3540 gaggcggtgg caaccacggc gtcggcatct caacgggagg atggatcgga ggatccatct 3600 tgggcaagaa taaaatcatc acacgcaata cgcgtcaatg ggtgtgcacc attcgagaca 3660 gccacagata caaacaatac acacaatggc gccaaggaaa cacaaacgta aaaatgcaag 3720 ggtacaccac gccttggaac atgttcaact ttaaccagta cagcagccac tttaatccca 3780 acgaatggca atggctcgtc aaccgggcct cacgcttcag accagtgaga atggaagtca 3840 aaatctataa cctacaaatc aaacaagaaa gcactcaaga cacaaccgca caatatacca 3900 acgatctcac cgcgggtctt cacgtgctct gcgacggaga acacgccttt ccttggacgc 3960 agctaccttg ggaccaagga tgcatgccag aactgcctca cgacgtctgg aagctgcaac 4020 aatacgccta catcacggtc gccccttatg cgcaagacac gacggacgac ggcgacgagc 4080 tcgacatacg aggcggcgta cccatgtatc tcctagagga gacggatcac gccgtcatcc 4140 gcacaggcga gagcatcacc ttccatcata ccttcgactg tgggtgggtc gacaacacac 4200 gctcgagcgt catgcctcag gcggcctgca tcaatccgct cgtcgactcc agactcgtag 4260 gagtctggct caacagcacc aataacggga caaacgagaa ccaaatgaga ccgtatcaga 4320 aacacggtcc gtggtggccg ggacccggtt accgagacaa cagaaacacc agcgacagcg 4380 gaacccaagg aaacaccgtc ctgggacctt acatcagcgt ctggaagccg gacggaatcg 4440 tctacgatgg gtctcatgtc agatccggag tggccacggg tccatacgta ggaggccagt 4500 cgagcgacat cacgacaggc aactcccaca acaacgccaa tcatctcaga ttcacaccgg 4560 gagacggacc gggcggggca gaccaacaca acttctttat ccggcgaagt tccgtccaca 4620 cgggaaccag ggatcaagct ctctataaag ccaccggcaa ctcctcagag gaagtgaaaa 4680 atgtctacat gatgccaaac caaatgtggg actcggcacc tatttccaga tataatccta 4740 tctgggtcaa agtacccaga gtggacagac acaccttgct cgacaccgac gacggaacct 4800 tacctatgac gcatcctccg ggaaccatct acgtcaagct ggccaatatt ccaactccga 4860 atggcacagg acatctcaat atctacgcca caggacaggt atcctgcgag atcgagtggg 4920 agtacgagga gcacttcaac aagaattggc gtccagaacg cagaatcgac gccaacaaga 4980 tgcgcgccga cgtctacaaa atcaacgaac agggtggata cgacctgcct caatcttatt 5040 acgaaaccat gccaaccagg tgggggcagg aaaaagtgct gtaacctttg ctctgtatgt 5100 aaattcaata aagctcatat gcagatttca aaaagactgc atgttgacac tttaattttt 5160 atgtgggtgg tgatggg 5177 //