ID JF429834; SV 1; linear; genomic DNA; STD; VRL; 5278 BP. XX AC JF429834; XX DT 19-SEP-2011 (Rel. 110, Created) DT 19-SEP-2011 (Rel. 110, Last updated, Version 1) XX DE Porcine bocavirus 3 strain SH20F, complete genome. XX KW . XX OS Porcine bocavirus 3 OC Viruses; Parvoviridae; Parvovirinae; Bocaparvovirus. XX RN [1] RP 1-5278 RX DOI; 10.1099/vir.0.033688-0. RX PUBMED; 21632566. RA Lau S.K., Woo P.C., Yip C.C., Li K.S., Fu C.T., Huang Y., Chan K.H., RA Yuen K.Y.; RT "Co-existence of multiple strains of two novel porcine bocaviruses in the RT same pig, a previously undescribed phenomenon in members of the family RT Parvoviridae, and evidence for inter- and intra-host genetic diversity and RT recombination"; RL J. Gen. Virol. 92(Pt 9):2047-2059(2011). XX RN [2] RP 1-5278 RA Lau S.K.P., Woo P.C.Y., Yip C.C.Y., Li K.S.M., Au W.K., Huang Y., RA Fu C.T.Y., Tsang T.H.F., Chan K.H., Yuen K.Y.; RT ; RL Submitted (23-FEB-2011) to the INSDC. RL Microbiology, The University of Hong Kong, University Pathology Building, RL Queen Mary Hospital, Pokfulam Road, Hong Kong, China XX DR MD5; 59874e40c037abab84f388d2408807fd. DR EuropePMC; PMC3838256; 24109231. DR EuropePMC; PMC3907790; 23225112. DR EuropePMC; PMC3950361; 24701194. DR EuropePMC; PMC4512980; 26217547. XX FH Key Location/Qualifiers FH FT source 1..5278 FT /organism="Porcine bocavirus 3" FT /host="pig" FT /strain="SH20F" FT /mol_type="genomic DNA" FT /country="Hong Kong" FT /collection_date="27-Mar-2007" FT /db_xref="taxon:1084715" FT gene 331..2334 FT /gene="NS1" FT CDS 331..2334 FT /codon_start=1 FT /gene="NS1" FT /product="NS1" FT /db_xref="GOA:G3EZE1" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G3EZE1" FT /protein_id="AEO37417.1" FT /translation="MASLGVGLSDQEWLSYWHGAITGFKNPSFSYVIRIDIKDWRVAER FT AIMDIFSKDLPSILDDLVDSEKEFLLCDVNYDWKGSLSMKLKNHHGLGQVLCEAGDMAA FT KRLFQLKQQSHNPVYSCFTQAEIGDTYMHVHLVLGGDGLTKCNAKKSAWVLAKYFWNYM FT LDLWKHYESCHDPTNMQYTVSVQLRLLCERVRAHQDATVTCLTYRDRHNESHAQRIDAC FT SFITNYLLPKNRSLCTWLGPDICTPSVAQFESNKTYMCSHIDRQPITHYLRKALYDRLV FT MNSAEETGEPVHKAARWSDLPEVGENSLARQNTQTRPTKLTRKQHVMLDTLQRCQEEFI FT CTKEELTMLHPDLVIMFESTPSGSRTLEEVLEMHRVRITRTETALSYIRRQFPDSKFIK FT PENKVVRLLNIQGYNPIQVGHWVATVLSKKAGKQNTICFFGPASTGKTNLAKAIANAVK FT VYGCVNHLNKSFVFNDCQNKLICWWEEAVMHNDWVEPAKCLMGGTSFRVDRKHKDSAEQ FT PHTPLILSTNHDIYTVVGGNTVTTVHEKPIRDRVVQFNFMKTLPQNFGEISVADVADWL FT GWCAEDFDCSLDGFKKEWELDRVPNSFPLASYCDGHLQDFVLYAQGPCCRCGGYLPHTT FT TSDGDWSEPAAEGTPWRMRDRETPIGRGGMCS" FT gene 2456..3136 FT /gene="NP1" FT CDS 2456..3136 FT /codon_start=1 FT /gene="NP1" FT /product="NP1" FT /db_xref="InterPro:IPR021075" FT /db_xref="UniProtKB/TrEMBL:G3EZE2" FT /protein_id="AEO37418.1" FT /translation="MSQRFSDTTSRSGKSNLRFSPYSTIQARERRVNERSTAEREHGTS FT SRDTAEMEARPGSSSQSTESCGRGRKGSSTPGSGSAVASSWKSRKMVKRANPAVVFSEH FT KKREGISFDYCGFYYHSTRIAGKGTRYIFDVAKRDFQAVARGNCITWDQHRELLFTYKR FT CLDTMYRSMMYHFRFTECQKCLYWDDFYRQHLAGVTPPETVPPSSVELTDVEMLEAVES FT MNES" FT gene 3126..5177 FT /gene="VP1" FT CDS 3126..5177 FT /codon_start=1 FT /gene="VP1" FT /product="VP1" FT /db_xref="GOA:G3EZE3" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:G3EZE3" FT /protein_id="AEO37419.1" FT /translation="MSLKRGQFRGVLFPGYNYLGPFNPLENGDPVNKADEAAKKHDQAY FT NNYINKGLNPYLKFNKGDQDFIDSLQSDSSVGGNFARAVFHLKKQIAPALNEPKDTGEP FT PAKKDKRAGNKRHLYFARLNKGAKKSKADNTDMDGDMDNNEQGAGEAPAAAGGERAAGG FT AGAIGGGGGGNNHGVGISTGGWIGGSILGNNKIITKNTRQWWCPIRNEHKYKRYTQWHQ FT SGTDYKMEGYTTPWNMFNFNQYSSHFNPNEWQWLVNRASRFRPVKMEIKIYNLQIKQES FT TQDQTAQYTNDLTAGLHVLCDGEHAFPWTQLPWDKGCMPELPHDIWELPQYAYITMPSQ FT AQDTDNAEERAFRCAVPMYLLEETDHSVIRTGESVIFHHSFDCGWVNNTRCSNMPQLAF FT TNPLIDSRLVKTRYTSGHSGALTEEQCRSYQKNPPWWPGPGWRTNTTTNGQNNNTILGP FT FSTTLSPAGMTYQTGPISYGAATGPYVGGQTAEPTNQAANNNNYLKFTPGDGTGGLNQG FT NAFIRRESVLTGTRDQKLYQANGQNVTEQQNVFMMPNQVWDSAQISRYNPIWVKTPRVD FT RHTMIDTEDGTLPMSHPPGTIYVKLAHIPTPQSGNNSYLNIYATGQVSCEIEWEYEEHF FT NKNWRPERRIDAQHMRADAYKVDANGVYNLPQSYYETMPTRWGQEKVL" FT gene 3534..5177 FT /gene="VP2" FT CDS 3534..5177 FT /codon_start=1 FT /gene="VP2" FT /product="VP2" FT /db_xref="GOA:G3EZE4" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:G3EZE4" FT /protein_id="AEO37420.1" FT /translation="MDGDMDNNEQGAGEAPAAAGGERAAGGAGAIGGGGGGNNHGVGIS FT TGGWIGGSILGNNKIITKNTRQWWCPIRNEHKYKRYTQWHQSGTDYKMEGYTTPWNMFN FT FNQYSSHFNPNEWQWLVNRASRFRPVKMEIKIYNLQIKQESTQDQTAQYTNDLTAGLHV FT LCDGEHAFPWTQLPWDKGCMPELPHDIWELPQYAYITMPSQAQDTDNAEERAFRCAVPM FT YLLEETDHSVIRTGESVIFHHSFDCGWVNNTRCSNMPQLAFTNPLIDSRLVKTRYTSGH FT SGALTEEQCRSYQKNPPWWPGPGWRTNTTTNGQNNNTILGPFSTTLSPAGMTYQTGPIS FT YGAATGPYVGGQTAEPTNQAANNNNYLKFTPGDGTGGLNQGNAFIRRESVLTGTRDQKL FT YQANGQNVTEQQNVFMMPNQVWDSAQISRYNPIWVKTPRVDRHTMIDTEDGTLPMSHPP FT GTIYVKLAHIPTPQSGNNSYLNIYATGQVSCEIEWEYEEHFNKNWRPERRIDAQHMRAD FT AYKVDANGVYNLPQSYYETMPTRWGQEKVL" XX SQ Sequence 5278 BP; 1449 A; 1271 C; 1388 G; 1170 T; 0 other; cccacacaag gaaataagta tcgaaaaaat agggataggc gggagataat gatagacacg 60 ccttttcggg cacagccaat cagggatatg aggtgatatg acgtcaagac acctgattgg 120 gtgggagggt ctatataagg agagaaccag gaagagtgag ctcattctgc tccgggacat 180 cgaggtgttc acatcgatga ggaggagacc tctcagcgcc atcttgattc tctgaatgct 240 gattctgcct gagaagagac tgctacagtc tatagacatc gctccgcggg agaagccagc 300 tccggcaagt atcctcttat atctgctagc atggcttctc ttggagttgg gctgtctgat 360 caggaatggc ttagttattg gcacggagct attactggtt tcaagaatcc cagctttagt 420 tatgtcatca gaattgatat taaggattgg agagtcgctg agcgtgccat tatggacatt 480 ttttctaaag atctaccgtc catcttggat gatctggtag attctgagaa ggaatttctg 540 ctctgcgacg tcaactatga ctggaaaggc agtctgagca tgaagctcaa gaatcatcac 600 gggctcggtc aggtcctctg tgaggctggg gacatggccg cgaagcggct gttccagctg 660 aagcagcaga gtcacaatcc ggtctacagc tgcttcactc aggccgagat aggtgacacc 720 tatatgcacg tccatctggt gctgggagga gacgggctga ccaagtgcaa cgctaaaaaa 780 agcgcttggg tcctggctaa atacttctgg aattatatgc tcgatctctg gaagcactac 840 gagagctgtc acgatccgac caatatgcag tacaccgtct cggtgcagct gcgtctgctc 900 tgcgagaggg tcagggctca tcaggacgcg accgtcacct gtctgaccta tcgagaccgg 960 cacaacgagt ctcacgctca gcgcatcgac gcttgcagct tcatcaccaa ctatctcttg 1020 ccgaagaata gatcgctgtg tacctggctg ggtccagata tctgcactcc gagcgtagct 1080 cagtttgagt ccaacaagac ctacatgtgc agtcacattg acaggcagcc gatcactcac 1140 tatctcagaa aggctctcta tgaccggctg gtcatgaaca gcgccgagga gacaggggaa 1200 cctgtccata aggcggcgcg ctggagcgat ctgccggagg tgggtgagaa ctcgctggct 1260 agacagaaca ctcagacgag accgactaag ctgacgagga aacagcatgt catgttagat 1320 acactgcaga gatgtcagga ggagtttatc tgtaccaagg aagagttaac tatgctacat 1380 ccagatctag tgattatgtt tgagagtact ccgagcgggt ctcgaacgct cgaagaggtg 1440 ctcgagatgc atcgggtgag aatcactaga acagagacgg ctctaagtta cattagacgg 1500 cagtttccag acagcaagtt tatcaagccg gagaataagg tggtcaggct tttgaacatc 1560 cagggctaca atcctataca ggtcggccac tgggtggcga ccgtgctctc taaaaaggcc 1620 gggaaacaga acacgatctg tttctttggt ccggccagta cggggaagac caacttagct 1680 aaagcgatcg cgaatgcggt caaggtgtat ggttgtgtca atcacctcaa caagagcttc 1740 gtctttaacg attgccagaa caaactcata tgttggtggg aggaggcggt gatgcacaac 1800 gattgggtag agccggctaa gtgtctgatg ggaggaacga gcttcagggt agataggaaa 1860 cacaaggata gcgcggagca gcctcacaca cctttgatcc tgagtaccaa tcatgacatt 1920 tacacggtgg tgggtgggaa cacagtgact accgttcatg agaagccgat tagagataga 1980 gtagttcaat tcaatttcat gaaaacgctg cctcagaact ttggagagat ttctgtggct 2040 gatgtggctg actggctcgg ctggtgcgcc gaggactttg actgcagtct cgacgggttc 2100 aagaaggaat gggagcttga ccgtgttccc aacagttttc ctctagcgag ctactgtgat 2160 ggtcatttgc aggattttgt gctctacgct caaggacctt gttgtcgctg tggtggttac 2220 ctgcctcaca ctactaccag cgacggtgat tggagcgagc ctgctgctga aggtacgcct 2280 tggcgcatgc gcgataggga gacacctatc gggcggggag ggatgtgctc atgatctgtt 2340 ctttgtcttg cagagcctac tccggcaaag tctccaaaga aagtgaccgc tactcagggc 2400 actcagaccg acgattcttc gagtgagtac atcgactgga gcagtcaacc agggaatgag 2460 tcagagattc tccgatacaa catctcgcag cgggaagagc aacctccggt tctctcctta 2520 ctcgacgatc caggcgaggg aacgtcgagt caacgagagg tctacagccg agagggagca 2580 tggaacgtct tcgcgggaca cagcggagat ggaggccaga ccgggatcct cgtcgcagtc 2640 gaccgagtcc tgcgggaggg ggaggaaggg atcatcgacc ccgggttctg gctcagctgt 2700 ggcgagctct tggaagagcc gcaagatggt taagagagct aatccggccg tcgtcttcag 2760 tgagcacaaa aagagggagg ggatcagttt cgactactgt gggttttact atcactccac 2820 aagaattgca ggcaagggaa ctaggtacat ttttgacgtg gcgaaaaggg actttcaggc 2880 tgtcgcccgg ggaaattgca ttacctggga ccaacataga gaattactat ttacgtataa 2940 acgatgcttg gatactatgt accgatctat gatgtatcac tttagattca ctgagtgtca 3000 gaaatgtctg tactgggatg atttctatag acagcacttg gcgggtgtca ctcctcctga 3060 aactgttcct ccttcttctg tagagctcac agacgtggaa atgctagaag ctgttgaatc 3120 aatgaatgag tcttaagcgc ggtcagttcc gcggtgttct gtttcctggt tataattatt 3180 tgggtccttt taatcctttg gaaaacggtg atcctgtcaa taaagccgac gaggccgcaa 3240 aaaaacacga tcaagcttat aataattata tcaataaagg tttaaatccc tacctgaaat 3300 ttaataaagg tgatcaagac tttatcgact ctttgcagtc tgactcttct gtgggcggta 3360 actttgcgcg tgccgtcttt catttgaaaa aacaaattgc gcctgcgctc aacgagccta 3420 aagacacggg ggaacctccg gcgaaaaagg acaaacgcgc gggcaataaa cgtcacctgt 3480 actttgcgcg cttgaataaa ggcgcgaaaa agagcaaagc tgataatact gacatggatg 3540 gggacatgga taataatgaa caaggggcgg gtgaggcgcc agctgctgca ggcggagaga 3600 gagctgctgg cggcgctggc gcgattggtg gaggaggagg cggcaacaac cacggcgtcg 3660 gcatctccac cggaggatgg atcggaggat ccatcttggg caacaataaa atcatcacca 3720 agaacacacg tcaatggtgg tgtcctatcc gcaatgaaca caaatacaaa cggtacacac 3780 aatggcatca atcaggcacc gattataaaa tggaaggcta taccacacct tggaacatgt 3840 tcaactttaa ccaatacagc agccatttta atcccaacga atggcaatgg ctcgtgaacc 3900 gagcctcacg cttcagacct gtaaaaatgg aaatcaaaat ctacaacctg caaatcaaac 3960 aagagagcac tcaagaccaa acagcgcaat ataccaacga tctcacggcg ggtcttcacg 4020 tcctctgcga cggggaacac gcctttcctt ggacgcagct accctgggac aagggatgca 4080 tgccagaatt acctcatgac atctgggaac tgccgcaata cgcctacatc accatgccgt 4140 cgcaggcaca agatacagat aacgctgaag aacgcgcttt ccgatgcgcc gtgcctatgt 4200 atctcttaga agaaacagat cactctgtca ttcgaacggg cgaaagcgtc atctttcatc 4260 attcttttga ctgcggctgg gtcaataaca cacgctgcag caacatgcct caattggcct 4320 ttaccaatcc gctcatcgat tctcgactcg tcaagacgcg atacacctct ggacattccg 4380 gggcgctgac agaagaacaa tgtagatctt accaaaaaaa tcctccgtgg tggccgggtc 4440 cgggatggag aaccaataca accactaatg ggcaaaacaa taacaccatc ctaggacctt 4500 tctcgacgac gctaagtcca gcaggcatga cctatcaaac aggtcccatc agttacggcg 4560 cagctacggg tccgtacgta ggaggtcaaa cggcagaacc aacgaaccaa gcagccaaca 4620 ataacaacta tctgaaattc acacctggag acggtaccgg tggactgaat caaggtaatg 4680 ccttcatccg aagagaatcc gtccttacgg gaaccagaga ccagaaactc tatcaggcca 4740 atggccaaaa cgtcacagaa caacaaaacg ttttcatgat gccgaaccaa gtctgggact 4800 cggcacaaat ctccagatat aatcccatct gggtcaaaac gcctcgagta gataggcaca 4860 ccatgatcga taccgaagat ggaaccttgc cgatgtcgca tcctccggga accatctacg 4920 tcaagctggc tcacattccg actccacaat cgggtaacaa ctcttacctg aacatctacg 4980 ccacggggca agtctcctgc gagattgaat gggagtatga agagcacttt aacaagaatt 5040 ggcggccaga gcgcagaatc gacgcacagc acatgcgcgc agacgcctac aaagtcgacg 5100 ccaacggggt ctacaatctg cctcagtctt attatgaaac catgccaacc aggtgggggc 5160 aggaaaaggt tctgtaacct ttgtactctg tatcctttat tcaaatcaat aaagctcata 5220 tgcagatttc aaaaagactg catgttgact atttaatttt tatgtgggtg gtgatggg 5278 //