ID JF421559; SV 1; circular; genomic DNA; STD; VRL; 8299 BP. XX AC JF421559; XX DT 06-OCT-2011 (Rel. 110, Created) DT 06-OCT-2011 (Rel. 110, Last updated, Version 1) XX DE Blueberry red ringspot virus isolate Coville 546 from Slovenia, complete DE genome. XX KW . XX OS Blueberry red ringspot virus OC Viruses; Ortervirales; Caulimoviridae; Soymovirus. XX RN [1] RP 1-8299 RX DOI; 10.1007/s00705-011-1077-x. RX PUBMED; 21796400. RA Petrzik K., Pribylova J., Plesko I.M., Spak J.; RT "Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) RT isolates from the Czech Republic and Slovenia"; RL Arch. Virol. 156(10):1901-1903(2011). XX RN [2] RP 1-8299 RA Petrzik K., Mavric I.; RT ; RL Submitted (22-FEB-2011) to the INSDC. RL Plant Virology, BC AS CR, Institute of Plant Molecular Biology, Branisovska RL 31, Ceske Budejovice 370 05, CZ XX DR MD5; dab448e4b2add4b939d96ccb8ab60312. XX FH Key Location/Qualifiers FH FT source 1..8299 FT /organism="Blueberry red ringspot virus" FT /host="Vaccinium corymbosum (blueberry highbush); cultivar FT Coville" FT /isolate="Coville 546" FT /mol_type="genomic DNA" FT /country="Slovenia" FT /collection_date="2009" FT /db_xref="taxon:172220" FT CDS 48..608 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF B" FT /db_xref="UniProtKB/TrEMBL:G4WV08" FT /protein_id="AEE01489.1" FT /translation="MEIPDLSQLSNIVLTDNPGTNPGIPYKGKIISIPKNLLPEKTEYS FT LAYDGSHEQRILPMLRFITAILNNQTEILSFLSINQIKSGTVFTEKYFEEQKNNISIQL FT EQNRKNISQKIEELKGLYDKKQDTIIQHSNRIINLITEIEHKKDLDEIKNTLKEIKKEL FT IDNNNQKEVKELIESLKDISDRI" FT CDS 615..1202 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF C" FT /db_xref="UniProtKB/TrEMBL:G4WV09" FT /protein_id="AEE01490.1" FT /translation="MTEGNGNGKLTERIENMILKYEELEKVVKQVSQDIHEIKEQVEVE FT NDIKEFNKSKYFNNTIRGNAKPTEEMIIDNKPEPCYQTDSPFPHLYHTFDPQLNNITDM FT LMYIIKNCCCKDKHEQKEKYPIIHPKILDEKQIKDLEEHIKELEEHRCITILDLKKYFG FT NKVNEDKRPIEYIEDQPRPSYKGRKPLWPQIM" FT CDS 1184..2659 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G4WV10" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:G4WV10" FT /protein_id="AEE01491.1" FT /translation="MATNNVMEPEMIDQQIEEIRNIMNNLKIEKTEENEIIFGNESENS FT DYDVRMDDIKQEPGTSNFEERWKRKRNSNYEYEPYNTDPFINAEDYGYKRGFYKNREGK FT WKRPKESGPVTGRLDDGILNLDCLTNGEELLKQWTAKQSLSTQIDASIRDMDAENYNKY FT LIYKTSGVVFNYIVDIDIPNISSMKNLEILEEIATRIYQEFLGGMSTQRATAADKHDQE FT RVKYILHKMKICDMCEFEEFYCQFIHYYYMLESSERSAYMNVFIQKLPYPLSKTINDEF FT QNQKNANLVPNTLGGIAKVIRAYILLQCTKEQEKMQLINVTKCCPKFEYIPHKFGCSPN FT SSRRGRRRTKPKYSKYYKQRKYHTFKPWYKKKRYRMYKRKYQPKYKQRYWKNKSNQKYC FT PKGKKDCKCWICQEDGHYANECPNKDKRRDKVKLLEQLSQVNLEPIENNEISEEELWYL FT QTDDESEEENSSNESEQYFYQDNNQSEDDISIY" FT CDS 2526..4568 FT /codon_start=1 FT /product="reverse transcriptase" FT /db_xref="GOA:G4WV11" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:G4WV11" FT /protein_id="AEE01492.1" FT /translation="MKYQKKNYGIYKLMTSQKKKIVQMNQNNTFIKITISQKTILAYID FT TGASLCLLPEYNLPKLLWKELKKPITIRVADKRELQITKVALMITIIIEKRKFLVPTIY FT QFDSGVPMIIGNNFLRLYYPFCQYLSYITLRCPKMINQKQEVIKIPIHHSSQLIKAKLL FT NLVTNLEEQLLMDQVNKILQERFSLDLLGEKNKNKELIEIKLKDPNAEIFVPNNIPYTQ FT RDIEEFKEDMEDLLNKGLIRPSKSPHSAPAFYVENHSEIKRAKRRIVINYKAMNEATIG FT TPKTLPRSDYIMNRLKGKIWFSTLDVKSAYWQLRLTEESKPLTAFSYPPQKHYEWNVSP FT MGLKQAPGIFQEFMNRSLHNLEHICLVYVDDIIIFSEKSKSDHLTKVLQVLKRCENEGI FT ILSQPKAKIAQKEIDFFGLHISEGEIILQPHILEKLVLFPDEIENRKQLQRFLGNLNYI FT SEKGFIRDFAKYRKELQKKVSEKVPWKWTSYDTTQVQALKALCQRLPKLYNAKESDLLI FT IATDASNGHWGAVMTAVTPVHINNYGISLEDLFPKEQHTAQALSSQYQFFGTKDFVQKE FT LLTKYASGTFTDTEKRYPIHELETLAVLQTFRKWKVDLLTKPFILKTDSKYVTGFLRYK FT IKANYNQGRLIRWQLELSQFNYRTFYIKGSENYGPDTLTREWKEL" FT CDS 4553..5836 FT /codon_start=1 FT /product="translational transactivator" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/TrEMBL:G4WV12" FT /protein_id="AEE01493.1" FT /translation="MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILSG FT DSSKLSLSVPEEKKHSVLADIEEVNKQVALARSKKEYYVIFNGPMKGIYDEWHKAAPHI FT QGKANIIHKKYPTIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQTI FT ESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASSLTTYEL FT FKNGLADTIYFSDSRVFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHPTFSIQGEED FT MPSYAVLQIGISNGDMPLMDNHHMPVPKHEELKQINLQNFIGVINHLSNLTANIKMLYK FT SDTMIIYSKANKEIEPDQEAVFIEFEKNFIENKIPKMTGEMKKELCNHMTKEDHPGHYC FT QYCPFLQQDDKKSASSEDEEKITMEVEE" FT CDS 6337..6798 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="InterPro:IPR021109" FT /db_xref="UniProtKB/TrEMBL:G4WV13" FT /protein_id="AEE01494.1" FT /translation="MSNQITLLNNYYLQYYIIGIVNERIRLILVDTGAAMSFIKQSFVH FT QESLTPIQPYTVKGYLDHHTIGDKYLVEHSTNINVILSNTFNKTLLLKTTQTKADVLGA FT EVLFGMDFLDSFESYSITKEQLILREGTITHYIPRITVDTETIRETLNY" FT CDS 6801..7910 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G4WV14" FT /protein_id="AEE01495.1" FT /translation="MSSPIILDQAGIIQNQEQNQEQNQISRVNNQNQMSRTEDQNQSEE FT IRHINQIFDIIQSNETNDYYGVDVQLERSKLKQIAKEGKLTLKSGQGIKSEGFLPSITR FT KNILYLGKSTSEQPLEISTAVGQEALSLVNGKQIADRIAKMKQSDKEKIQYIHLSTIQI FT LVKSTYASIDTPMDIIVIDNRIISKNKKEQVLGIIKGNLKYGVIKFDVSLHFAIPLVTR FT NLSQSIGILYKFHRQDLMEKGDYPLSITYSVGYALSNSHHSVDYIDQEIIHIDDLFKNT FT STKLVTFEKKNENANDIFKAPPVRMIKPREDISKPTITDVTDPLQPTTSSSIQLAPPPN FT LHRKPESMQNLEKQIQELRRTVTNLNEKI" FT CDS 7907..8275 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF A" FT /db_xref="UniProtKB/TrEMBL:G4WV15" FT /protein_id="AEE01496.1" FT /translation="MSYQYRRGPYLKGSTKRCTLENIEPMKEILTTTKKEFLEQFPRSE FT ERSKIIGNLQGLIDYLVKRQKREAENPELTIQEKILQRLNSIEEKLEKSNSFSSLFDDL FT EETSHQTNQVNIPPSSEN" XX SQ Sequence 8299 BP; 3590 A; 1271 C; 1271 G; 2167 T; 0 other; tggtatcaga gcttgagcta caaaaagttc aaactcgaaa tatcttaatg gaaattcccg 60 atttatcaca attatcaaat atagtactca ctgataaccc aggaaccaat ccaggaatcc 120 cttataaagg aaaaattata agtataccta agaatttact accagaaaaa actgagtatt 180 cattagctta tgatggatct cacgaacaac gaatattacc tatgttaaga tttattactg 240 ctatattaaa taatcaaact gaaatattaa gtttcttatc tattaatcaa ataaagtctg 300 gaacagtatt tacagaaaaa tactttgaag aacaaaagaa taatatatct atacagcttg 360 aacaaaaccg taaaaatata tcccaaaaaa tagaagagtt aaaaggatta tatgataaaa 420 aacaagatac tattatacaa cattcaaata ggataataaa tctgataaca gaaatagaac 480 ataaaaaaga cttagacgaa ataaaaaata ccctcaaaga aataaagaaa gagttaattg 540 ataataataa ccaaaaagaa gttaaagaat taattgaaag tttaaaagat ataagcgatc 600 gaatataagt agaaatgaca gaaggaaacg gaaatggaaa attaaccgaa agaatagaaa 660 atatgatatt aaaatatgaa gaattagaaa aagtagtaaa acaagtaagc caagatatac 720 atgaaataaa ggaacaagta gaagtcgaaa atgacataaa agaatttaat aaatcaaaat 780 acttcaacaa tacaatccga ggaaatgcta aacctactga agaaatgatt atcgataaca 840 aaccagaacc atgttatcaa accgattcac cttttccaca tctatatcac acctttgatc 900 cacaattaaa taatataact gatatgctta tgtatataat aaaaaattgc tgttgcaaag 960 ataagcacga acaaaaggaa aaatacccta taatacatcc taaaatatta gatgaaaaac 1020 aaataaaaga cttggaagaa catataaaag aactagaaga acaccgatgt ataaccattt 1080 tagatttaaa gaaatatttt ggaaataaag ttaatgagga taaaagacca atagaatata 1140 ttgaagatca gccaagacct agttataaag gaagaaaacc attatggcca caaataatgt 1200 aatggaacca gaaatgatag atcaacaaat cgaagagatt agaaatatta tgaataatct 1260 taaaatagag aaaactgaag aaaatgaaat aatatttgga aacgaatcag aaaatagtga 1320 ttatgatgta agaatggatg atataaaaca agaaccagga actagtaatt tcgaagaaag 1380 atggaaaaga aaaagaaatt caaactatga atatgaacca tataatacag acccatttat 1440 taatgcagaa gattatggat ataaaagagg attttataaa aatagagaag gtaaatggaa 1500 aagacctaag gaatcaggtc cagtaacagg acgattagac gatggaatat taaatctaga 1560 ttgtttaact aatggagaag aattattaaa acaatggaca gcaaaacaat cattatcaac 1620 acaaatagat gcttctatta gagatatgga tgcagaaaac tataataagt atctaatata 1680 taagacatca ggagtagtat ttaattatat agtcgatata gacataccca acataagttc 1740 tatgaaaaac ttagaaatat tagaagaaat agctacaaga atatatcaag aattcctagg 1800 aggaatgagc acacaaagag ccacagcggc cgataagcat gatcaagaaa gagtaaaata 1860 tatattacat aaaatgaaaa tatgtgacat gtgtgaattc gaagaattct actgtcagtt 1920 tatacattac tattatatgt tagaatcatc agaacgaagt gcatatatga atgtgtttat 1980 tcaaaagtta ccatacccat tatcaaaaac tataaatgac gaatttcaga atcaaaagaa 2040 tgcgaactta gtacccaata cattaggagg aatagctaag gtaataagag catatatatt 2100 attacaatgt actaaagaac aagaaaaaat gcaattaatc aatgtaacaa aatgttgccc 2160 aaaattcgaa tatataccac ataaatttgg ttgttcacca aattcttctc gaagggggag 2220 aaggagaact aaaccaaaat attcaaaata ttataaacaa cgcaaatatc atacctttaa 2280 accatggtat aaaaagaaaa gatatcgtat gtataaaaga aaatatcaac ccaaatataa 2340 acaaagatat tggaaaaata aaagtaatca gaaatattgc cctaaaggaa aaaaggattg 2400 caagtgttgg atctgtcaag aagatggaca ctatgcaaat gaatgcccta acaaagataa 2460 aagaagagat aaagtaaaat tattagaaca attatcacaa gtgaatctcg aacctataga 2520 aaataatgaa atatcagaag aagaattatg gtatttacaa actgatgacg agtcagaaga 2580 agaaaatagt tcaaatgaat cagaacaata cttttatcaa gataacaatc agtcagaaga 2640 cgatattagc atatattgat acaggtgcat cattgtgcct actaccagaa tataatctac 2700 caaaactatt atggaaagag ttaaagaaac ctattactat aagagttgct gataaaagag 2760 aattacagat tactaaagta gcccttatga ttaccataat aatagaaaaa aggaaattcc 2820 ttgtacctac tatatatcaa ttcgattcag gagtacctat gattatagga aataactttt 2880 taagattata ctatccattt tgtcaatatc tatcctacat aacattaaga tgtcccaaaa 2940 tgattaatca aaaacaagaa gtgattaaga tacccataca tcacagttca caactaataa 3000 aagcaaagtt acttaactta gtaacgaatc tcgaagaaca attattaatg gatcaagtta 3060 ataaaatatt acaagaaaga ttctcactag atttactagg agaaaagaat aaaaataagg 3120 aactaataga aataaaatta aaagacccaa atgctgaaat atttgtacca aataatatac 3180 cttatactca aagagatata gaagaattca aagaagatat ggaagatcta ttaaataaag 3240 gtttaattag accaagtaaa agtccacata gtgcgccagc attctatgta gaaaatcatt 3300 cagaaataaa aagagcaaaa agaagaattg taataaatta caaagctatg aatgaagcta 3360 ctattggaac acctaagaca ttaccaagat cagattatat aatgaataga ttaaaaggaa 3420 aaatatggtt ttcaacatta gatgtaaaat cagcctactg gcaattaaga ttaacagaag 3480 aatccaaacc attaacagca tttagttatc cacctcaaaa acattacgaa tggaatgttt 3540 cacctatggg attaaagcaa gctccaggta tctttcaaga atttatgaat agaagtttac 3600 ataatctaga acatatatgt ttagtatatg ttgatgatat cattatattt tcagaaaaaa 3660 gtaaaagtga tcatttaaca aaagtattac aagttttaaa aagatgtgag aatgaaggaa 3720 taattttatc acagccaaaa gcaaaaatag cacaaaaaga aatagatttc tttggattac 3780 atatttcaga aggagaaata atactacaac cacatatttt agaaaaatta gtattatttc 3840 ctgatgaaat tgaaaatcga aagcaattac aaagatttct tggaaattta aattatataa 3900 gtgaaaaagg atttataaga gattttgcaa aatatcgaaa ggagttacaa aagaaagtat 3960 cagaaaaagt gccatggaaa tggacttcct atgacactac tcaagtgcaa gcactcaagg 4020 cattatgtca acgattacca aaattataca atgctaaaga atcagatttg ctgataatcg 4080 ctaccgatgc tagtaatggc cattggggag cagttatgac agcagtcact ccagtacata 4140 tcaataatta tggaatatcc cttgaggatt tattcccaaa agagcagcat acagcgcaag 4200 cattatcatc tcaatatcag ttcttcggaa caaaggactt tgtccaaaaa gaattactta 4260 ctaaatatgc tagtggaaca ttcacggata ccgaaaaaag atatcctatc catgaattgg 4320 aaacattagc agtattacaa acttttcgaa aatggaaagt cgatttatta acaaaacctt 4380 ttattttaaa aacagattca aaatatgtta caggattttt acgatacaaa ataaaagcca 4440 attataatca aggacgattg attagatggc aacttgaatt atcacaattc aattatcgaa 4500 ctttttatat aaaaggatca gaaaattatg gccctgacac cctaaccagg gaatggaagg 4560 agctataaaa acattggaga atcaaatcag caccaaagag caatcatttc aagcaaagaa 4620 gcagaagcta gcagaactcg aagcagagat caacaatctc agatcaacat tagccatact 4680 cagtggagat agcagcaagt tatcactatc agtcccagag gaaaagaagc attcagttct 4740 agctgacatc gaagaagtca acaaacaagt tgcattagcc agaagcaaga aggaatatta 4800 tgtcattttt aatggaccca tgaaagggat ctatgacgaa tggcataaag cagcaccaca 4860 cattcaagga aaagccaaca tcattcacaa gaaatatcca accattgacg aagcaaaaaa 4920 ggcccttgga ggaagttacg cagcaatcac taatgcacca gcatcaccaa aagattcaaa 4980 agtactattg ggaagattca aagtcccttc agtaccaaca attgattcaa tccaaactat 5040 tgagtcaaaa atgaaagcat taaaggttac tcagaagaaa tataatgatt atatggagat 5100 cctctacaac tacaaggatc aacataaatt attacatttc taccctaagt accgagatac 5160 aattggatac aaagcaataa ttctacccga agcatcatca ctgaccacct atgaattgtt 5220 caaaaatgga ttagctgaca ctatctattt ttcggactca agagtattta atgatttccc 5280 tgaacgaatc aagcaaacca tcaacaacta tttcaagagg ttcgccaagg aaagaccatg 5340 ctacattaag ttattcagta ctcatccaac cttcagcatt caaggagaag aagacatgcc 5400 cagctacgca gtactacaga ttggaatcag caatggagat atgcctttaa tggataatca 5460 ccatatgcca gtacccaagc atgaggaatt aaaacagatc aatctacaga acttcattgg 5520 agtaattaat catttatcta atctgacagc aaacattaaa atgctgtata aatcagatac 5580 aatgattatc tattccaaag caaacaagga aattgaacca gatcaagaag cagtatttat 5640 tgaatttgaa aagaatttta ttgaaaataa aattccaaaa atgacggggg agatgaagaa 5700 agaattatgc aatcatatga ccaaagaaga tcatccagga cactactgcc aatattgtcc 5760 attccttcag caggatgata agaagtcagc atcaagtgaa gacgaagaaa agatcaccat 5820 ggaagtggaa gaataaaacg tcttcatcca tcactatcac gatgtagaca gcacaatgta 5880 aagctacggc tattattagg cttagaatct acgccaatgt aaagtagatt cccttatctt 5940 ttattttgta agtttgaagt ccggagttga gttccgtctg tggaattcct ctatataagg 6000 acgacctatc ctatgtttgt agtcagagtg ttttccatat gtgaataaac gtttatcgtt 6060 ttaaaggttt cgccctttca ctctccagtg ttgagttctt cgtaagaagt tctctgaaga 6120 gcacatccta tccctatata ccctatcctt acctatccgg taattctatc ccaaaagctt 6180 gttgcagaaa caaacttgca ggattcaaaa caggattcgt caaagaacag gtatatgcct 6240 aaatcatcac tattcatcac tattctatct ttatctgtgt gtacttatta atttcatcct 6300 atcaattttg ttattactat tttgtgttat catatcatgt caaatcaaat tactttgttg 6360 aataattact atctacagta ttatattatt ggaattgtaa acgaaagaat tagattaata 6420 ttggttgata caggagcagc tatgtccttt ataaaacaat cattcgttca tcaagaatca 6480 ttaacaccta tccaaccata tacagtaaaa ggatatttag atcatcatac aattggagat 6540 aaatatttag tagaacattc taccaatata aatgtcatat taagcaacac cttcaataaa 6600 acattattat taaaaacaac tcaaacaaaa gcagatgtat taggagcaga agtattattc 6660 ggaatggatt ttttagatag ctttgaatca tactcgatta caaaagaaca gttaatacta 6720 agagaaggaa ctattactca ttacatacca agaattacgg tagatacaga gactataaga 6780 gaaactttga attattaaag atgtcatcac ctatcatact agatcaagca ggaataatcc 6840 aaaatcaaga acaaaatcaa gaacagaacc aaatatcaag agtcaataat cagaatcaga 6900 tgtctaggac agaagatcaa aaccaatcag aagaaatcag acatattaat caaatctttg 6960 atattatcca atcaaatgaa acaaatgact attatggagt cgatgtccaa ctagaaagat 7020 ctaaattaaa acaaatagca aaagaaggaa aattaacatt gaaatcagga caaggaataa 7080 aatctgaagg atttttacca tctattacta gaaagaatat attatattta ggaaagtcta 7140 caagcgagca accattagaa attagcaccg cagtaggaca agaagcttta tcattagtta 7200 atggaaagca aatagcagac agaatagcaa aaatgaaaca atccgataaa gagaaaattc 7260 agtatataca cttgagcaca atacaaatat tagttaaatc tacctatgcc tcaatagata 7320 cacccatgga tattatagtt attgataata gaataatttc taaaaataag aaagaacaag 7380 ttctaggaat aattaaagga aatctgaaat atggagttat taagtttgac gtaagtttac 7440 acttcgccat accattagta actaggaatt taagtcaatc tataggaata ctatataagt 7500 ttcatagaca agatctaatg gaaaaaggag attacccact tagtatcacc tactctgtag 7560 gatatgcatt aagcaatagt caccatagtg ttgattatat agaccaagag attatacata 7620 tagatgacct atttaaaaat accagcacta aattagtaac gtttgagaaa aagaatgaaa 7680 acgctaacga tatatttaaa gcaccaccag taagaatgat caaacctaga gaggatatat 7740 caaaaccaac aataacagat gttactgacc cattacaacc aaccactagt agttctatcc 7800 aactagcacc tccacctaac ctacatagaa aaccagaaag tatgcagaac ctagaaaagc 7860 aaatacaaga attaagaagg acagttacaa acctcaatga aaaaatatga gttatcaata 7920 cagaagagga ccatatctaa aaggaagcac taagagatgt accctagaga atatagaacc 7980 catgaaagaa atattaacta ctactaagaa agaatttcta gaacaatttc ctagatctga 8040 agaaagatca aaaataatag gaaatttaca aggattaatt gattatctag ttaaaagaca 8100 aaaacgagaa gcagaaaatc cggaattaac catacaagaa aagatattac agagattgaa 8160 cagcattgaa gaaaaattag agaagtctaa ttcattttca tcactatttg atgatttaga 8220 agaaacttct catcaaacaa atcaggtcaa tattccgcca tctagtgaaa actagttagt 8280 tgaccgcccc ggtccgttt 8299 //