Dbfetch
ID JF416947; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC JF416947; XX DT 01-APR-2012 (Rel. 112, Created) DT 01-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Cotton leaf curl Burewala virus segment A, complete sequence. XX KW . XX OS Cotton leaf curl Burewala virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2759 RA Bi H., Gadidasu K., Zhang P.; RT "Sequence analysis of Cotton leaf curl Burewala virus segment A"; RL Unpublished. XX RN [2] RP 1-2759 RA Bi H., Gadidasu K., Zhang P.; RT ; RL Submitted (22-FEB-2011) to the INSDC. RL SIBS-ETH Shanghai Center for Cassava Biotechnology, Institute of Plant RL Physiology & Ecology, Shanghai Institutes For Biological Sciences, CAS, 300 RL Fenglin Road, Shanghai 200032, China XX DR MD5; 5acb6621ab482abf9d88d20e97a969f9. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Cotton leaf curl Burewala virus" FT /segment="A" FT /host="cotton" FT /mol_type="genomic DNA" FT /country="Pakistan:Rajasthan, Sri Ganganagar" FT /isolation_source="leaf" FT /collected_by="Kranthi Gadidasu" FT /collection_date="Sep-2009" FT /clone="BK1" FT /db_xref="taxon:620894" FT rep_origin join(2690..2759,1..138) FT gene 139..495 FT /gene="AV2" FT CDS 139..495 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:B8Q6T2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B8Q6T2" FT /protein_id="AFB35640.1" FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ILVIRARNYVEATSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT gene 299..1069 FT /gene="AV1" FT CDS 299..1069 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D3HIR0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D3HIR0" FT /protein_id="AFB35641.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1066..1470) FT /gene="AC3" FT CDS complement(1066..1470) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:D3HIR1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HIR1" FT /protein_id="AFB35642.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY" FT gene complement(1211..1615) FT /gene="AC2" FT misc_feature complement(1211..1615) FT /gene="AC2" FT /note="similar to transcription activator protein" FT gene complement(1512..2603) FT /gene="AC1" FT CDS complement(1512..2603) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:H9MZH9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9MZH9" FT /protein_id="AFB35643.1" FT /translation="MAPPKRFKIQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYNEFLNEEKNTALKNWALKNAIFITLEGPL FT YSASNQSTAQGSEETQQEEESRS" FT gene complement(2144..2689) FT /gene="AC4" FT CDS complement(2249..2689) FT /codon_start=1 FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9MZI0" FT /protein_id="AFB35644.1" FT /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIISS FT LIHSAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSARITDS FT STWYPQPGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFR" XX SQ Sequence 2759 BP; 716 A; 545 C; 648 G; 850 T; 0 other; taatattacc ggatggccgc gcgatttttt tgtgggccct accattaact cttgtcggcc 60 aatcatatga cgcgctcaaa gcttaaataa ttctcccgcc tattataagt acttcgttgc 120 taagtattcg tttgaaaaat gtgggatcca ctgttaaatg agttccccga caccgttcac 180 ggttttaggt gtatgttagc agttaaatat ttgcagttag tagagaaaac ttactctcct 240 gatacattgg gttacgattt gataagggat ttaatcctgg taataagggc taggaattat 300 gtcgaagcga ccagcagata taatcatttc cacgcccgct tcgaaggtac gccgtcgtct 360 caacttcgac agcccatatg tgagccgtgc tgctgccccc attgtccgcg tcaccaaagc 420 aaaagcatgg gcgaacaggc ccatgaacag aaagcccagg atgtacagga tgtacagaag 480 tccagatgtt cctagaggat gtgaaggtcc atgtaaggtt cagtcgtttg agtccagaca 540 tgatattcag catataggta aagtaatgtg tgttagtgat gttactcgtg gtactgggct 600 gacccataga gttggtaaga gattttgtgt taagtctgtt tatgtgttgg gtaagatctg 660 gatggatgag aacattaaga cgaagaatca cacgaatagt gtgatgtttt tcttggttag 720 agatcgtaga cctgttgata aacctcaaga ttttggagag gtatttaata tgtttgataa 780 tgagcccagt acggcgactg tgaagaatgt tcatcgtgat aggtatcaag ttctgcgcaa 840 atggtatgca actgtcaccg gtggacaata cgcttcaaag gaacaagctc tcgtgaagaa 900 atttattaga gttaataatt atgttgtgta taaccagcag gaagctggca agtatgagaa 960 tcattctgag aatgctttaa tgttgtatat ggcgtgtact cacgcctcta acccagtgta 1020 tgctaccttg aagatacgga tctacttcta tgattccgtg acaaattaat aaatattgaa 1080 ttttattgaa gatgattggt ctacaaatac aacatgttgt aatacattcc ataatacatg 1140 atcaactgct ctaactacat tattaatact gacaattcct aagttattta aatatttaag 1200 cacttgagtc ctaaagaccc ttaagaaacg accagtcgga ggctgtgagg tcatccagat 1260 tcggaaagct atgaaacatt tgtgtatccc caacgctttc ctcaggttgt gattgaactg 1320 gatcctgatc gtgagtatat ccatattcgt cgtgaatgga cggttgacgt ggctgatgat 1380 cttgaaatag aggggatttg gaacttccca gatatatgcg ccattccctg cttgagctgc 1440 agtgatgggt tcccctgtgc gtgaatccat ggttgtggca gttgattgac agatactaag 1500 aacaccctca ttcaagatct actctcctcc tcctgttgcg tctcttcgct tccctgtgct 1560 gtactttgat tggaagctga gtacagtggt ccttcgagag tgatgaatat tgcatttttt 1620 aaggcccaat tctttaatgc tgtgtttttt tcctcgttga ggaattcatt ataactgctg 1680 ttcggaccag gattgcacag gaagattgtc ggtatcccgc ctttaatttg aactggcttt 1740 ccgtattttg tgttggactg ccagtctctt tgggccccca tgaactcttt aaagtgtttg 1800 aggaaatgcg ggtcgacgtc atcaatgacg ttgtaccagg cgtcgttact gtatactttg 1860 ggactcaggt ccagatgtcc gcacaaatag ttatgtggtc ccaatgatct agcccacatc 1920 gtcttccccg ttcgactatc tccctcaatt actatactcc gaggtctaag gggccgcgca 1980 gcggcatcga caacgttatc gatggcccaa acttcaagtt cttctggaac ttgatcgaaa 2040 gaagaaggag aaaaaggaga aatataggga gccggtggct cctgaaagat tctgtctaga 2100 tttgcattta aattatgaaa ttgtagtaca aaatctttag gagctagttc cttaatgact 2160 ctaagggcct ctgacttact gcctgcgtta agtgctgcgg cgtaagcgtc gttggctgtc 2220 tgctgtcctc ctcttgctga tcttccatct atctgaaact ctccccactc gagagtgtcc 2280 ccgtccttgt cgatgtaggc cttgacatct gagcttgatt tagctccctg aatgttcgga 2340 tggaaatgtg ctgacctggt tggggatacc aggtcgaaga atctgttatt cgtgcagacg 2400 aatttgccct cgaactggat gagcacatgg agatgagggc tcccatcttc gtgtaactct 2460 ctgcagagtt tgatgtattt tttattcgag ggtgtgttga tggcttgaat ttgggaaagt 2520 gcttcctctt tagtgagtga gcactgtgga taagtgatga aataattttt ggcttgtatt 2580 ttaaaacgtt tggggggagc cattgacttt ggtcaattag agacaactga tgggctttta 2640 ctctgggaat tggagactgg atacaattta tagtgtctcc aaatggcata ttctgtaaat 2700 aactagaagt ttgtttgaaa ttcaaattcc cctttgggct ccaaaagcgg ccatccgta 2759 //