Dbfetch
ID JF411989; SV 1; circular; genomic DNA; STD; VRL; 7140 BP. XX AC JF411989; XX DT 02-MAR-2012 (Rel. 112, Created) DT 25-JUL-2012 (Rel. 113, Last updated, Version 2) XX DE Fig badnavirus 1 isolate Arkansas 1, complete genome. XX KW . XX OS Fig badnavirus 1 OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7140 RX DOI; 10.1094/PHYTO-12-11-0351. RX PUBMED; 22992110. RA Laney A.G., Hassan M., Tzanetakis I.E.; RT "An integrated badnavirus is prevalent in fig germplasm"; RL Phytopathology 102(12):1182-1189(2012). XX RN [2] RP 1-7140 RA Laney A.G., Hassan M., Tzanetakis I.E.; RT ; RL Submitted (18-FEB-2011) to the INSDC. RL Plant Pathology, University of Arkansas, 495 N Campus Dr PTSC 217, RL Fayetteville, AR 72703, USA XX DR MD5; a0e6e2656da36c4032da53aa8e71a47e. XX FH Key Location/Qualifiers FH FT source 1..7140 FT /organism="Fig badnavirus 1" FT /host="fig" FT /isolate="Arkansas 1" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="05-May-2008" FT /db_xref="taxon:1034096" FT CDS 217..648 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:H8Y6I2" FT /protein_id="AEF56562.1" FT /translation="MSEKWERSIQDWYNNSRTANLEYLDLAEKEKPTNSHLYHNLAVVY FT DRLNLQSRVNLKNLKGILERVEKQERKLESLELAVRNLTQVFVENKPLTTTEVRRLVYE FT ISQQPKLVEQEALRLTEELRQKLERVEAIVKKVESWTSS" FT CDS 645..1052 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:H8Y6I3" FT /protein_id="AEF56563.1" FT /translation="MSSYIVSQGTNSYKEAIKATEGIESPAAGFVRPADFQGGTSAARV FT QIKQNNTLIQLLIQIAESLKDIREEQRVLKEEVRQLQKDKAASITEELVERLQSLSLGV FT PEKKVAEKKRTFRVFKDPLRILEEEKEKLPK" FT CDS 1049..6562 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF3" FT /db_xref="GOA:H8Y6I4" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:H8Y6I4" FT /protein_id="AEF56561.1" FT /translation="MNRSRTVTQQLPAVSTRRREEINRDQPLFEDQIRDYRRNQRRRFV FT AEQAVRRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQI FT YNHRSEEAMLCVGEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADGGTMAL FT VVFRDNRWQGDQSIFAISEVDLTRGSQIVYVIPDTMMIIGDFYRNVQISIQTSGYENWQ FT NGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYRSEMLRGRNWI FT IRQPQIQAAMMPRNVETRNLIDGTISARSADYTQAPEPRQPHYNEQDEEVASDEEELAE FT TQQHIVAMLRFPDYVEIQEFKPKYKEQYDKYKREQGWDTLGEPSGKYDYYVRYTAPPAT FT TPIEDIQPTGWEEEPKWDDSPDEKSLATIRFEEYKEEESQSDEEHYQPDAEAEFDYPLK FT RIHYLNPFSEGGGKDDHLNSEEMDYPQRMKKIEKLLSTSEVTSPYRPPEDAAMGRPSYP FT PARTIPGGGASSSAEPPRFDAARTRFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFND FT AFSRWESVTKNHVATQGFTDTRDKIKYMENLLGEIEKLIWIQWRMTYATEYEALVAIGE FT GRDGTQNILSQMRRVFSLEDPAQGSTVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAA FT KTGRLFLGGELSEKIWMKMPGDLRKTIKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRD FT AAFKRSLKNLSFCSSIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIEKRKHLVRNKR FT CKCFLCGQEGHFARKCPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIYSISEG FT EDGADELQKSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAVHCS FT FCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRIIQEQHNYIGW FT CEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELKEGDKERRKGIMIQEPEEVNYLGE FT DEKILAAGTEEKKKFVKNMLYNFDIEFEIPDVSRFRVRAILDTGASTCCINEGAVPKEA FT LEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNF FT IRAMYGGVRIEGNEVTFYKNLTRISTSPEVSVNSLDEEVCEEEYLQVQEMVICNIGESR FT KSFLKKFRPLLEELKEAGFIGENPLQHWKKNGILCQLDIKNPDFIIEDRPLKNLTPQMK FT ESFKKHIKVLLDLGVIRASKSRHRTTAMLVNSGTTVDPKTGKEIKRKERMVFNYKRLND FT ITHKDQYSLPGINTILKKVGNSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWL FT VMPFGLKNAPSVFQRKMDECFKGTEDFIAVYIDDILVFSENEKDHAKHLKAMLEICKRN FT GLVLSPSKMKIAVQEVEFLGAQIGNQRIRLQPHVIKKIVEFNEAELKEKKGMRSWLGIL FT NYARAYIPNLGRLLSPLYAKTSPTGDKRMNAQDWKLVAQIKEEVQKLPDLELPPEDCFI FT ILETDGCMTGWGGICKWKPKRNDPRRMEKVCAYASGKFSPIKSTIDAEIHAVMNTLEKL FT KIYYLDKKELIIRTDCQAIISFFNKSALNKPSRVRWVAFTDFITGIGINVEFEHIDGRD FT NVLADSLSRLINSFFLTEWSLKKEEAVAELEKLMEDKQCRKQLLPLINKMTNCFNNTRT FT LLRKEKGSFDQEEYLLPETMNSENNSGRLKKNLQEEPLKPWNNTGRFTHLKQPNVHHGV FT HPEGMGIIGLIACQALGDMTQD" XX SQ Sequence 7140 BP; 2429 A; 1313 C; 1741 G; 1657 T; 0 other; tggtatcaga gctagttatg agtgagtagg ttcttataag gtattcgggt aaacagggaa 60 agatttatta tgcctagatt gatttgataa tcttgtttct cagatctctg agttgtagta 120 tctaaaagga aaaagtcctt gggcactata tctggttaag gcaggaggcc gtgtgatacc 180 agtgaaaccc tgaggtgatc ctgatggata tgagtcatgt ctgagaaatg ggaaaggtca 240 attcaggatt ggtataataa ttctagaact gcgaaccttg aataccttga tttagcagaa 300 aaggaaaaac caacaaattc tcacctttac cataatctag cagtagttta cgatagacta 360 aacttgcaat ctcgtgttaa cctcaaaaac cttaagggta ttttagaaag agtggaaaaa 420 caagagagaa aacttgagag tttagaacta gcagtaagga accttaccca agtttttgtt 480 gaaaataagc ctttaacaac aactgaagtt agaaggcttg tttacgaaat ctctcagcaa 540 ccaaagcttg tagagcagga ggctctaagg ttaactgaag aacttcgtca aaaactcgaa 600 agagttgagg cgatagtaaa gaaagttgaa agttggacct cttcatgagt agttatattg 660 tctcccaagg gacaaatagc tacaaggagg ccataaaagc tactgaagga atagaatccc 720 cagcagcagg gttcgtgaga ccagccgact tccagggagg aacatcggca gcgagggttc 780 agattaagca gaataatacc cttattcagc ttctaatcca gatcgctgag tccctgaagg 840 acatccgaga agagcagcga gtcctaaagg aggaggttag gcaactgcag aaggacaaag 900 cagcttcaat cacagaagag cttgtggaaa gacttcaaag tctctcgtta ggagtcccag 960 aaaagaaggt agctgagaag aaaagaactt ttagggtatt caaagaccct ttaagaatcc 1020 ttgaagagga aaaagaaaag ctgccaaaat gaacaggtcg agaacggtga ctcagcagct 1080 gccagctgtg agtaccagac ggagggaaga aattaacagg gatcaacctc tgttcgagga 1140 tcagatccgt gactaccgga ggaatcaaag gcgaaggttt gtagctgaac aagccgtaag 1200 acgaaccatg ggaagaatgc gaggacgacg atacaaccaa actctggagc agatcgtaga 1260 tccagaggta gagctgaacc aatctatgca ggaaagagcg aacctagtac ctgcagaagt 1320 tctgtaccgc tcaagaagag acaacataaa ccatcagatc tataatcata gatccgagga 1380 agcgatgctt tgtgtaggag aacagcaaga caggatgttt atccaaccta acagcttcca 1440 agaactacag aggagtggta tgcagttcat acatctggga gttttgcaag taagactcca 1500 gatactgcat agggcagatg gaggaacaat ggccttggta gtcttcagag ataaccgatg 1560 gcaaggagat cagtcaatct tcgcaatctc agaagttgac ttgactagag gatcgcaaat 1620 agtatacgtg atacctgaca cgatgatgat tatcggtgac ttctacagaa acgttcagat 1680 ctctatccag accagtggat atgagaattg gcagaatgga gaggcaaatt tgctgatcac 1740 aagaggcatg acgggaaggt tatccaacac tccaaatgtt ggatttgctt acagaataag 1800 ccatgtgacg gattacctag caagcagggg agtccaagct ttgccgggaa gaagatacag 1860 atcggagatg ctacgaggaa gaaactggat cataaggcag ccacagatcc aggcggcaat 1920 gatgccaagg aacgtggaaa caaggaacct gatagatgga acaatctctg caagatctgc 1980 agattacact caggcaccag aaccacgaca accccattac aatgagcagg acgaagaagt 2040 ggcgagtgat gaggaagagc tggcagaaac tcaacagcac atagtagcaa tgctgcgatt 2100 tccggattat gtggagatac aggagtttaa gccaaagtac aaagagcaat acgacaagta 2160 caaaagggag cagggctggg ataccctggg agaaccaagc ggaaagtatg actactacgt 2220 ccgctacact gcacctccag cgacaacgcc gatagaagat attcagccaa caggctggga 2280 ggaggagcct aaatgggatg attcacccga cgagaaatca ttagcaacaa ttcgattcga 2340 ggaatacaag gaagaagaat ctcaatcgga tgaagaacat tatcaaccag atgctgaagc 2400 agaatttgac tacccgctaa aaaggattca ttacctaaat cctttttcgg aaggtggtgg 2460 gaaagatgac catttaaatt ctgaagaaat ggactacccg caaagaatga agaaaataga 2520 aaagttacta tccaccagtg aggtaactag tccatacaga ccaccagaag atgcagccat 2580 gggaagacca agttatccac cagctaggac aataccagga ggaggggcaa gctcaagcgc 2640 tgaacctcca aggtttgatg cagccagaac aagatttaaa gggggataca atgacgagat 2700 gtggacacta ccatcagccc aacagaagaa tggagccatg ttcgtaatac cagaacaact 2760 tgggctattc aatgatgctt tctctagatg ggaatcagtc actaaaaacc atgtggctac 2820 acaaggtttt actgataccc gagataaaat aaagtacatg gaaaatctac tcggagaaat 2880 tgagaagctg atttggatac agtggagaat gacgtatgcc acggaatacg aagccttagt 2940 agccatcgga gaaggcaggg atggtactca gaacattctc tcgcaaatga gaagagtgtt 3000 ttccttagaa gatccggcgc agggttcgac agtaatccag gatgaagcct acagagagtt 3060 ggaaagaatg tcttgtacag acgttaaata catcattcca tttctaaatg agtatatgcg 3120 tttggcagca aagacgggaa ggctattctt aggaggagaa ctatctgaga agatctggat 3180 gaagatgccc ggagatttaa gaaaaacaat aaaagaagac tttgacaaca aatacccagg 3240 agtcgtatca ggggtggtac ccagggtatt atttgcttac aagttcttgg agaaggaatg 3300 cagagatgca gcattcaaga ggtccctaaa gaacctgtca ttttgtagtt caattcctat 3360 accaggatac tataaaaata caggcaagaa gtatggagtg cgaagatcca agacgtacaa 3420 aggcaagcct cacgagagcc atgctaggat tgaaaagcga aagcacctgg tccgcaacaa 3480 aagatgcaag tgcttcctat gtggacaaga aggtcatttt gcaagaaagt gtcctaatga 3540 taaaaggagc tctaaaagga tggctatgtt tgaaaatctg gaaataccag aagattgcga 3600 tatagtctct gtagaagaag gagaggatat gagtgatgcc atatactcaa tatccgaagg 3660 agaagatgga gcagatgagc tgcagaaatc actccaaaca ttggaaattg ttcttatgtt 3720 aggagaaatt gatggagggt accggccgca gatcaagctt cctgaggagc agatgaattg 3780 tgtccataac tggatacata atggggatat ctttgtacaa agagctgttc attgcagctt 3840 ctgcagaagg gaaagcataa aaagggcaag aatacattgt cctttgtgtc tcctaacagc 3900 ttgcaatctg tgcggacctt actacttgaa gatagaagta ccggtggaac cagcaccatc 3960 aaccccgata aatccgagaa gaattattca ggagcagcac aactacatcg gatggtgtga 4020 agtagaaata gagagactaa acaaggaagt gaagcactac aaagggctat acgaagcctt 4080 actaatggag aaatccttaa ggaaagacta cgaggagctg aaagaaggag ataaggagcg 4140 aagaaagggc ataatgatac aagaaccaga agaagttaac tatctgggag aagatgagaa 4200 gattcttgca gcaggaacag aggaaaagaa gaaattcgtc aagaatatgc tttataactt 4260 tgatattgaa tttgagattc cagatgtctc aagattcaga gtaagagcaa ttcttgatac 4320 aggagcttca acatgctgta tcaatgaagg agcagttcca aaagaagccc tcgaagaaag 4380 cccttatgaa gttcagctga atggggtcaa ctctgtgcag aaaacaaaga agaagctcaa 4440 gtacgggaga atgatgatcg ggatgaatac gttcagaatc ccttttacat acagtctgcc 4500 actggtcatc ggagataaca tccagatgat tgtaggttgt aacttcatca gagcaatgta 4560 tggaggagtg agaatagaag ggaatgaggt aaccttttac aagaacctca cacggattag 4620 cacatcccca gaagtctcgg tgaattccct ggatgaagaa gtttgcgaag aagaatattt 4680 gcaggtgcag gagatggtga tctgcaacat tggagaaagc cgaaaatcat ttcttaagaa 4740 gttcaggcct ttgctggaag aacttaagga agcagggttt ataggagaaa atccattaca 4800 gcattggaag aaaaatggga ttttatgcca acttgatatc aaaaatcctg atttcataat 4860 tgaagatagg ccactgaaga atttaacgcc acagatgaag gagtccttca agaagcatat 4920 caaggttttg ctggatttag gagtcatcag ggcaagtaaa agccgccaca gaacgacggc 4980 aatgctagtc aactcaggaa caacggtgga tccgaaaaca gggaaggaga tcaaaaggaa 5040 ggaaagaatg gtcttcaact acaaaaggtt gaatgacatc actcataagg atcagtatag 5100 tcttccagga ataaatacga tcctcaagaa ggttggaaat agcaagatat tcagcaagtt 5160 tgatctaaag agcggatttc accaagttgc tatgcatcct gactcaatag aatggacagc 5220 tttttgggtc ccagacggat tgtatgagtg gcttgtcatg ccattcggac tcaaaaacgc 5280 tccttctgtt tttcaaagaa agatggatga atgcttcaaa gggacagaag attttattgc 5340 agtctacatt gacgatattc ttgttttctc tgaaaacgag aaagatcatg cgaagcactt 5400 gaaggccatg ttggagatct gcaaaagaaa tgggttagtt ctaagcccat ctaaaatgaa 5460 gatagcagtc caagaggtgg aatttcttgg agcccaaatc ggaaatcaaa ggatccgact 5520 tcagccacat gttataaaga agatcgttga gttcaatgag gctgagttga aggagaaaaa 5580 gggcatgaga tcatggttag gaattctcaa ctatgctcgc gcatacattc ctaacttggg 5640 ccgcctttta agcccactct atgccaaaac aagtccaact ggagataaga ggatgaatgc 5700 ccaggattgg aagctcgtgg cccaaataaa agaagaagtc cagaagctgc cagatctgga 5760 gctaccaccc gaggattgtt tcatcattct tgaaacagac ggctgtatga ctggttgggg 5820 aggaatttgt aaatggaagc ccaaaagaaa cgacccaaga aggatggaga aagtttgcgc 5880 ctatgctagt gggaagttta gtccaatcaa gtcaaccatt gatgccgaaa tccatgcagt 5940 catgaacact ctggaaaaat taaagattta ttatcttgat aaaaaggagt tgatcatcag 6000 aactgactgc caagctatca tcagcttctt caataaatcc gccctaaata aaccctctag 6060 agtgagatgg gtagccttta cggattttat cacagggata ggaattaatg tggagttcga 6120 gcatatagat ggaagggata atgtgcttgc tgatagcctt tcaaggttaa ttaacagttt 6180 ctttcttaca gaatggagtc tgaaaaagga ggaagcagta gcagagctag agaagcttat 6240 ggaagacaaa caatgcagga agcaactcct accattaatc aacaaaatga cgaactgttt 6300 caacaatacc agaaccttgc tgaggaaaga gaaaggatcc ttcgatcagg aggaatatct 6360 tttgccagag acaatgaatt cagaaaacaa ctcagggagg ttgaagaaga atctgcaaga 6420 agagccatta aagccctgga acaatacagg cagattcaca cacttaaaac agcccaatgt 6480 gcatcatgga gttcacccgg aagggatggg aattattggt ctgattgctt gccaagcgtt 6540 aggcgatatg acgcaagatt agaaaaggtc ctacaagact tgaaggacgc gtcagctgac 6600 agcctaaagt tccgcatttg aagcatgatg ggcccagaaa agtggttgag gcgtctcact 6660 ataatcgatg cccttatctt ttcctttgtc attttgtaat aatggaatcg tctttttgac 6720 ccaaaggctg ccgtccatgt gcagtgattc ctttagtttg cgtgttttat ccgcttacac 6780 ggattgtcct ttgtaaccac tttcacgtgg ttttgctttt ctttagtgcg cctcttttgc 6840 gcccttgttt ttagcgttag tacgctttga gtcaagtttc cttatcattt gggaatcttt 6900 tgagctgtcg atggggccca atgaagcacc cgagctcttt taattcctat ataaggagct 6960 ttagtttcgt tgcaaggcac acaacaatca agcaaccctt gagccttact tcgaaaagag 7020 tctgtaaaag tttagagtct gtaatcagtg tgaagtttga agaaataaat tagaggtaat 7080 tcagtttaaa atctctttta tttcttgttt tcgatccatt ttatttgggg gacacacaaa 7140 //