ID JF297562; SV 1; linear; genomic RNA; STD; VRL; 6503 BP. XX AC JF297562; XX DT 29-MAR-2011 (Rel. 108, Created) DT 29-MAR-2011 (Rel. 108, Last updated, Version 1) XX DE Potato virus T isolate CIP1 replicase, 30K movement protein, and coat DE protein genes, complete cds. XX KW . XX OS Potato virus T OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Tepovirus. XX RN [1] RP 1-6503 RA Kreuze J.F., Cuellar W.; RT "Mining siRNA sequence collections for characterization and discovery of RT viruses"; RL Unpublished. XX RN [2] RP 1-6503 RA Kreuze J.F.; RT ; RL Submitted (18-JAN-2011) to the INSDC. RL Germplasm Enhancement and Crop Improvement, International Potato Center, RL Aveninda La Molina 1895, Lima 12, Peru XX DR MD5; 82b2aa47f21dcfbedd6a6e0a565ea4f2. DR EuropePMC; PMC6256546; 30533781. XX FH Key Location/Qualifiers FH FT source 1..6503 FT /organism="Potato virus T" FT /host="Solanum tuberosum (potato)" FT /isolate="CIP1" FT /mol_type="genomic RNA" FT /country="Peru" FT /db_xref="taxon:36403" FT CDS 55..4875 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:F2YL03" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F2YL03" FT /protein_id="ADX41471.1" FT /translation="MSFSFRTPAELFVQSLPKEYAEAXFKSHATNFQIRSDKGIGLFDF FT ACSSVVKERLTKAGIPVSAFCNREHSHPASKMIENHXLYNILPNYLNLKNYTAISIKDS FT KVRKLLKNGVDSLETFNRLFSCKDALRYVDPETCDMDKFIARVHHSTRIFLFDELHYWS FT MNSLSDFLDRSNVKELLATIVFPIEILLGSKRSLNPELYEFEISRGKLHFFPDGCTSES FT YSQPKDCDILKVNRIVTKTGKIFSVELIHTIGANHMVMIKEGSFDVDSERFFDRSSALT FT TSLLIPTRAGKALRIRRKFLLRLIIYLFSLKKPDHHSAIAKIRQSSDDSIFCDEIMLAD FT HVGKIFEKLDPASPFGVKGVFDLLTSIFKDIFLLDGLFNWSDRRKSEKFVEFMRALDYQ FT TNKVVTCTFSGGVMRSGFLAEFFLDNDCEASEGLDEVISRFDTFFDPKKEYSAHALRVN FT IKDRTPSPYGPMKARTPSVVLHREYITKVELSSKAKKVNVLKERLTGEVSFEEARLQRM FT WYSDSQFVAGLAPKLRYVKMLTWKKDQELFSEFPSEESNEVEMEDAFELRKRRTLXXXX FT KERDENGANSEECEQLDSEDDVGSFEYEETKADSXEIDFEAILNRVNSGGLRGVCLLDA FT LAKITGTKREITLXXLLGRDGTWADWFLKDKGATFDDVFKAVSDLDLNCTICTKEGSFN FT AHVNRNYKHNFLYLFDEHVSLERPKVMLFEQVRHQKIDFLGAFEKCPGAGKFRYEALAE FT RGSLLASALKDNLTGVISSKFNWDPKCEFVDIEKEILVVAGFAGSGKTRGICQIVKSMF FT NNKKTLVLSPRKNLADDWVKNLANLHRPSHVKVMTFEAGLRRVQKSSLIVIDELSLMPN FT GYLDMLINMNEEATFITLFDPLQARYHAKSDVLRVSPENDVDRIKVPKYLFFSKRMSSE FT LDFFDVRCSSDQKKWELHGKQYREPAALFRDIKGQEFTILSPSFETAREMSKYADIKDG FT CKSMTFGESQGLTVNKAVIVVDQDLVATSVLHWIVALTRSRQGFVILVHKVFDMKTLIQ FT PVQNSIIGLVLRGVKVSREHLINTAGKCLSEAEIVEELETFKRTEEDEDLLEGDPWLKG FT QLFLCQSVELDEVTPEEPLRHESPPRTHLPLPVEGLTPLLMSNVKAREDREFITPSGWS FT KQFRDDKENVDWRNVSYADAFETIYPKHEASDDITLWAAIQKRIVMADPFRNAMKLXKV FT EPISAEIFNEMNKILLLNPHVSVDRDQVYKEFLRKRLNKSKKLIESHSERSSDDWPIDH FT FFLFMKSQLCTKFEKRFVDAKAGQTLACFSHKLLTRFGPAFREFEKKFTANLPPSWYIH FT TMKNFDQLNNWVINYVDQEEGTESDYEAFDRSQDAIILGLEIECLKLFGWDQDLIDDYR FT KLKLWMGCRLGAIAIMRFTGEFGTFFFNTIANIAFTCLRYNITRDTVIAFAGDDMYASG FT KLEIRKDREDLLAHLTLKAKVQFTEKPMFCGWYIKKMGIVKEPRLVLERWLIAERKKVI FT DQCFINYSIEVSYGYRLGEYLWEYFDNLEDFQAIVRLVIKKKKQLPPAIRRIFETSNGV FT DFSGEVQETMGGEGEHHGSCGLWCNLH" FT CDS 4784..5860 FT /codon_start=1 FT /product="30K movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:F2YL04" FT /protein_id="ADX41472.1" FT /translation="MELISVEKFRRQWEERESITGPVDSGAIYTNSAFHNLKTKWHVYK FT SECSIGLDLPDNGKIISKDIPLFDQEEIDNIMKDDKQVFVHLGAFVFGLVAHFPVDEEV FT EGLVSIIDKRRTDLRRATLAXXKIKFVNGRCAFMMKPNFSVRKEDLRDGDXXCAAIKIK FT NLGFEGGFFPFSACGGVIYRTSNVSFAHAVDKTFASRTVHDLVGTDILSLDQLDQATLE FT DLEEVRRSPILRLTAPDERVMIERGNWFQKKPAIRRRSFGKXRPQKSSSVRSASLPRFS FT CSERLERGFESESLAGLVLDQKYGPNNFCADKRRSPESDSGSLQQSMGRSSHSGSEEWG FT KGTDVAIPLRKNRNIFSE" FT CDS 5694..6335 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:F2YL05" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:F2YL05" FT /protein_id="ADX41473.1" FT /translation="MDPTTFVQIRDEVLNLTVAAYSSQWDGQATQALKNGAKEQMLRFL FT FGRIAISSASRNTIWPDTEIASEDLQIGMSAASAGPPPVAAAPISLTFRVNFNSYVKML FT IALSNTSTNSFVXXKTLRQMCMPFAXXXXGYLSEMGYATWAYEKMPKLCRKAKWVAFDF FT ASGLLIDTTMQLNDDEKTVIQGLGARLFKTQQSIQIADSTMDGEAINREI" XX SQ Sequence 6503 BP; 1991 A; 1121 C; 1548 G; 1787 T; 56 other; cgaaaaacta cctggccttg aacctcaaaa gacactaatt gtntacaatt aaaaatgtct 60 ttctccttca ggacgccagc agaacttttc gttcagtctt tgcctaaaga atatgcggaa 120 gcanntttta aatctcatgc aactaatttc cagatccgat ccgataaggg aattggctta 180 tttgattttg catgttcttc tgtggtcaag gaaagactca ctaaggccgg tatacccgtt 240 tctgcctttt gcaatcgaga acattctcac cccgcatcta agatgattga aaaccatytc 300 ctgtacaata ttttacctaa ttacctgaac cttaagaatt acaccgcaat ttcaattaag 360 gattccaaag ttagaaagtt gttgaagaat ggtgtagaca gtttagaaac cttcaataga 420 ttatttagct gtaaagatgc tttgagatat gtagatcccg aaacttgtga tatggataaa 480 ttcatagcta gggttcatca ttcaactagg atatttctat ttgatgagct ccattactgg 540 tccatgaact ccctatctga ctttttggat aggtctaatg tcaaagagct gttggccact 600 atagtttttc caattgaaat tctgcttgga tcaaaaagga gtttgaatcc agaactctat 660 gaatttgaga tttcaagagg aaagttacat ttctttccag atggttgcac ttcagagtca 720 tattcacaac caaaagattg tgatatcttg aaggtgaaca gaattgtgac taagactggg 780 aaaatcttct cagttgagct tattcacacc attggggcca atcacatggt gatgataaaa 840 gaaggttcct ttgatgttga ctcagaaagg ttctttgaca gatcctcagc tttgaccact 900 agtcttttaa tacccactag agcaggtaag gcccttagaa tcagaaggaa gtttcttttg 960 agattgataa tttacctgtt ttcactgaaa aaacctgatc atcactctgc aatcgccaag 1020 atcaggcaaa gctcagatga ctctatcttt tgtgatgaga taatgttggc tgatcatgtt 1080 ggcaagatat tcgagaaatt ggatcctgct agcccttttg gagtcaaggg agtctttgat 1140 ttgttaacaa gtatctttaa agatattttc ctactcgatg gtctcttcaa ttggtctgat 1200 agaagaaaat ctgagaagtt tgtagaattc atgagagctt tagattatca aaccaacaag 1260 gttgtcacct gcactttttc gggtggagtc atgaggagtg gcttcttagc ggaattcttc 1320 ttggacaacg attgcgaagc gagtgaaggg ctggatgagg taatttcaag gttcgacact 1380 ttctttgacc caaaaaaaga atattcggca catgctttga gggtgaacat caaggacagg 1440 acaccaagcc catatggtcc aatgaaggca agaactccaa gtgtcgtact gcatagagag 1500 tacataacaa aggttgagct ctctagcaag gcgaagaagg tcaatgtctt aaaagagcgg 1560 ttgactggag aggtgtcttt tgaagaggcc aggttgcaga gaatgtggta ctccgattct 1620 caatttgttg ctgggctggc gccgaaactg agatatgtca agatgttgac atggaaaaaa 1680 gatcaggagc tgttcagtga attcccctca gaagagtcaa atgaagttga gatggaggat 1740 gcatttgaat tgaggaaaag gagaactctg aannnnnnnn nnaaagagag ggatgagaat 1800 ggagcaaatt ctgaagagtg tgagcaactg gattcagaag atgatgttgg ttcatttgag 1860 tatgaggaaa caaaggctga ttcctawgaa attgactttg aggcaatttt raatagagtc 1920 aactcaggag gtcttcgagg cgtttgcttg ttggatgccc tggcaaaaat aactgggaca 1980 aaaagagaga tcaccctnnn nnttcttcta gggagggatg gcacctgggc cgattggttt 2040 ctgaaggaca agggcgccac ttttgatgat gtcttcaagg cagtctcgga tcttgatctg 2100 aattgtacaa tatgcacgaa agagggctca ttcaatgcac atgtgaatag gaattataag 2160 cataacttcc tttatctatt tgatgaacat gttagcctgg agaggccaaa agtcatgctc 2220 tttgaacagg taagacatca aaagatagac tttttgggtg cctttgaaaa atgtcccggg 2280 gctggtaagt tccgctacga ggcgttagct gagagaggaa gtctgctagc ttctgcttta 2340 aaagacaatc tcactggagt catttcaagc aaattcaatt gggaccccaa atgtgagttc 2400 gtggatattg aaaaggaaat tcttgttgtg gctggttttg caggttctgg aaagactcgg 2460 ggcatatgtc aaatcgtcaa gagcatgttt aacaataaga aaactctcgt tcttagtcca 2520 aggaagaatc tggcggatga ttgggttaag aacttggcca atttgcacag gccaagtcat 2580 gtgaaggtaa tgacatttga agctggtttg aggcgagtgc agaagtcttc tctaattgtg 2640 atagatgagt tatctttgat gccaaatggt tatctagaca tgctcataaa tatgaatgag 2700 gaggccacat tcataacact ttttgatcca ctgcaggcta gataccatgc aaaaagtgat 2760 gtgctcaggg tgagccctga aaatgacgtt gacagaataa aggtgccaaa atacctcttc 2820 ttctcaaaga gaatgagttc agagctagat ttcttcgatg ttagatgctc atctgatcaa 2880 aaaaaatggg aacttcatgg aaagcaatat cgtgagccag ccgcactatt cagagacatc 2940 aaaggtcagg aattcacaat actatcacca tcatttgaga ctgctagaga aatgtccaag 3000 tatgcagaca tcaaggatgg gtgcaaatca atgacctttg gtgaatcaca aggtctaaca 3060 gtcaacaagg cagtgattgt agttgaccaa gatctggttg caacatcagt gttgcattgg 3120 atagttgcat tgactaggag cagacagggt tttgtcatac tggtgcacaa agtctttgac 3180 atgaaaacat tgattcaacc tgttcagaat tctataattg gtctcgtgct aagaggggtt 3240 aaggtttcaa gagaacatct tatcaacaca gctggaaagt gtctgtctga agcagaaata 3300 gtggaggagt tggagacctt caaaaggacg gaagaggatg aagacctgct cgaaggtgac 3360 ccttggttaa agggtcagct ctttctttgt caaagtgttg aattagatga agttacacct 3420 gaggaaccat tgaggcatga gagcccacct aggacacatt tacctctccc ggttgaagga 3480 ttgacaccgc ttttaatgtc aaatgttaag gcaagagagg atagagagtt cataactcca 3540 agtggatgga gcaaacaatt cagggatgat aaagaaaatg tggactggag aaatgtctca 3600 tatgctgatg cttttgaaac aatttatccg aaacatgagg caagtgatga tataacttta 3660 tgggccgcca ttcaaaagag aatcgtgatg gcagatccat tcagaaatgc aatgaagctg 3720 maaaaagtgg aaccaatctc agctgagatt tttaatgaaa tgaacaaaat acttctcttg 3780 aatccacatg tgagtgttga tagagatcaa gtctacaaag agttcttgag aaagaggtta 3840 aataagtcaa agaagttgat agaatcccac tctgaaaggt catctgatga ttggccaata 3900 gatcacttct tcctgtttat gaagagccag ctatgtacaa agttcgagaa gaggtttgtg 3960 gatgcaaagg ctggtcaaac actggcttgt ttttcgcaca agttattgac aagatttggg 4020 cctgcattta gagagtttga aaagaagttc acagcaaatt tgccgccatc atggtatatt 4080 cacacaatga agaatttcga tcaactgaac aactgggtca ttaactacgt tgatcaagaa 4140 gagggcactg aatctgatta tgaagctttc gatagatcac aggatgcaat cattctaggt 4200 cttgaaatag aatgtctgaa attgtttgga tgggatcaag acctgatcga tgattacaga 4260 aagctgaaac tttggatggg atgtagrttg ggggcaattg caattatgag attcacaggt 4320 gaatttggaa cattcttttt caacacaatt gcaaacatcg cattcacatg tttgaggtat 4380 aatatcacca gagacactgt gattgcgttt gcaggagatg acatgtatgc atccggaaaa 4440 ctcgaaatca ggaaagatag agaagacctg ctggcccatc taactttaaa ggcaaaagta 4500 cagttcacag aaaagccaat gttctgtggg tggtacatca agaagatggg aattgtgaag 4560 gagccaagat tggtacttga gaggtggttg atagctgaaa gaaagaaggt gatagatcaa 4620 tgcttcatca actactcaat cgaggtatct tatggataca gattaggtga gtacctttgg 4680 gagtattttg ataatttaga ggatttccaa gcaatagtga gattggtgat aaagaagaag 4740 aagcaactgc caccagctat aagaaggatt tttgaaacaa gcaatggagt tgatttcagt 4800 ggagaagttc aggagacaat gggaggagag ggagagcatc acgggtcctg tggactctgg 4860 tgcaatctac actaactccg cgtttcacaa tctgaagacc aaatggcacg tttacaagtc 4920 tgagtgcagt attggtcttg atttgcccga taacggaaaa ataatatcaa aggacatccc 4980 cctctttgat caagaggaga ttgataacat catgaaagac gataaacagg tattcgtcca 5040 tctgggagcc tttgtgttcg gacttgttgc acactttcct gtcgatgagg aagtggaagg 5100 attggtctct atcattgaca aacgtcggac tgatctaagg agggcaaccc tagctnnnnn 5160 naaaattaaa tttgtgaatg gaagatgcgc tttcatgatg aaaccaaact tttcagtcag 5220 gaaggaggat ttaagggatg gtgacannnt ttgtgccgct atcaaaatca aaaaccttgg 5280 ctttgaaggt gggttctttc cattttcagc atgtggcgga gtgatttaca gaacctcaaa 5340 tgtgagtttt gcacatgctg ttgacaaaac ctttgcttct aggactgttc atgatttggt 5400 gggtactgat atactctctt tggatcaact ggaccaagcc actctggagg accttgagga 5460 agtgagaagg agccccattc taaggttaac cgctcctgat gagagagtaa tgatagaaag 5520 agggaattgg ttccagaaga aaccggcaat aaggaggaga agttttggga aannnagacc 5580 ccaaaaaagt tcgtcagtta ggtcggcgag tttgcctcga ttttcatgtt ctgagaggtt 5640 agaaaggggc tttgaatcag agagtctggc tggattagtg ctagatcaga aatatggacc 5700 caacaacttt tgtgcagata agagacgaag tcctgaatct gacagtggca gcttacagca 5760 gtcaatggga cggtcaagcc actcaggctc tgaagaatgg ggcaaaggaa cagatgttgc 5820 gattcctctt cggaagaatc gcaatatctt cagcgagtag aaacaccatc tggcctgaca 5880 cggagatcgc gtcggaggat ctccagatag gtatgtcagc ggcttcagcg ggtccacctc 5940 cagtggctgc tgctccgata agccttacat ttagggtaaa ttttaattct tatgtcaaaa 6000 tgctaatagc tttgtccaac acttcaacaa attcctttgt aaasaawaaa acactcagac 6060 aaatgtgtat gccttttgca aannnnnnnn ntggatactt atctgaaatg ggttatgcaa 6120 cttgggcata tgagaaaatg cccaaacttt gtcgaaaggc taaatgggtt gctttcgatt 6180 ttgcatctgg gttgttgatt gatacaacaa tgcagttgaa tgatgatgaa aagaccgtca 6240 ttcaaggtct gggagctagg ttattcaaaa ctcaacagtc cattcaaatt gctgattcca 6300 caatggacgg tgaagctatc aatcgtgaaa tttgactgag aaagaggaga agagttggtc 6360 gtttgttaaa tccgcataat tggtcgcggt cttgagggtt gactggccct catttgaatn 6420 nnnnnnnnnt ctgcataatt gatcgcagtc tagggagttg atatgctccc cccgatgttc 6480 ttaatctagg gtttgtatgg ttt 6503 //