ID   JF279606; SV 1; linear; genomic RNA; STD; VRL; 2214 BP.
XX
AC   JF279606;
XX
DT   26-JUL-2011 (Rel. 109, Created)
DT   26-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Tfr-In segment RNA-3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2214
RA   Geetanjali S., Mandal B., Kumar R., Srivastava P.S.;
RT   "Characterisation of two distinct Indian strains of Cucumber mosaic virus
RT   infecting tomato and subgroup-specific diagnosis based on complete RNA-3
RT   genome";
RL   Unpublished.
XX
RN   [2]
RP   1-2214
RA   Mandal B., Geetanjali S.;
RT   ;
RL   Submitted (01-FEB-2011) to the INSDC.
RL   Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New
RL   Delhi, Delhi 110012, India
XX
DR   MD5; b99a4d1ad285507d1598b6b16258495b.
DR   EuropePMC; PMC3550734; 23637513.
DR   EuropePMC; PMC3550809; 23730005.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2214
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA-3"
FT                   /host="tomato"
FT                   /isolate="Tfr-In"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Aurangabad"
FT                   /isolation_source="tomato fruit showing grey-patches"
FT                   /collection_date="Jan-2005"
FT                   /note="subgroup-IB"
FT                   /db_xref="taxon:12305"
FT   5'UTR           1..111
FT   gene            112..951
FT                   /gene="MP"
FT   CDS             112..951
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:G0ZI03"
FT                   /protein_id="AEK69523.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRVASFFKSGYDAGELSSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVTLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYVLTNAKINQNARSESEELNVESPPIAIGSSSASRSETFSPQVVNGL"
FT   misc_feature    952..1255
FT                   /note="intergenic region"
FT   gene            1256..1912
FT                   /gene="CP"
FT   CDS             1256..1912
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /note="coat protein"
FT                   /db_xref="GOA:G0ZI04"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:G0ZI04"
FT                   /protein_id="AEK69524.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVSPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKGDALETDELVLHVDIEHQRIPTSGVLPV"
FT   3'UTR           1913..2214
XX
SQ   Sequence 2214 BP; 509 A; 522 C; 532 G; 651 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtgtcg cgtcgtgttg tccgcacatt        60
     tgagtcgtgc tgtccgcaca ttttcttttc agtgtgttag attcccgagg catggctttc       120
     caaggtacca gtaggacttt aactcaacag tcctcagcgg ctacgtctga cgaactccaa       180
     aagatattat ttagccctga agccattaag aagatggcta ctgagtgtga cctaggccgg       240
     catcattgga tgcgcgctga taatgctatt tcagtccggc ccctcgttcc cgaagtaacc       300
     catggtcgtg ttgcttcttt ctttaagtct ggatatgatg ctggtgaatt aagctctaaa       360
     ggatatatga gcgttcctca agtgttgtgt gctgttactc gaacagtttc caccgacgct       420
     gagggatctt tgagaattta cctagctgat ttaggcgaca aggagttatc tcctatagat       480
     ggacagtgcg tcacattaca taaccatgat ctacccgctt tagtgtcttt ccaaccgacg       540
     tatgattgtc ctatggaaac cgttgggaat cgtaagcggt gttttgctgt tgttatcgaa       600
     agacatggtt atattgggta taccggtacc acagctagcg tgtgtagtaa ttggcaagca       660
     cggttttctt ctaagaataa caactacact cacatcgcag ctgggaagac tctagtactg       720
     ccattcaaca gattagctga gcaaacgaaa ccgtcagccg tcgctcgcct gttgaagtcg       780
     caactgaaca acatagaatc ttcgcaatac gttttaacga atgcgaagat caatcaaaat       840
     gcgcgcagtg agtccgagga attaaatgtt gagagccctc ccatcgcaat cgggagttct       900
     tccgcgtccc gctccgaaac ctttagtccg caggtggtta acggtcttta gcgcaagaat       960
     tagtgttttc gtagcgtttt agtatataat tatatgtgag tctgtacata tattatatct      1020
     atagtgtcct gtgtgagttg atacagtaga catctgtgac gcgatgttgt gttgagaaga      1080
     gagcacatct ggttttagta aacccacaac atatctttga ggttcaattc ctctcgttcc      1140
     ctgttgggcc cctttacttt ttcatggatg cttctccacg agattgcgtt tcgtctactt      1200
     atcctaagag tattgtgctg tgttttctct ttgtgtagta gatttgagtc gagtcatgga      1260
     caaatctgaa tcaaccagtg ccggtcgtaa tcgtcgacgt cgtccgcgtc gtggttcccg      1320
     ctccgcttcc tcctccgcgg atgctaactt tagagtcttg tcgcagcagc tttcgcgact      1380
     taacaagacg ttagcagctg gtcgtccaac tattaaccac ccaacctttg tgggtagtga      1440
     acgctgtaaa cctgggtaca cgttcacatc tattaccctg aagccgccaa aaatagaccg      1500
     cgggtcttat tatggtaaaa ggttgttgct acctgattca gtcacggagt tcgataagaa      1560
     gcttgtttcg cgcattcaaa ttcgagttag tcctttgccg aaatttgatt ctaccgtgtg      1620
     ggtgacagtc cgtaaagttc ctgcctcctc ggacttatcc gttgccgcta tctctgctat      1680
     gtttgcggac ggagcctcac cggtactggt ttatcagtat gctgcatccg gcgttcaagc      1740
     caacaacaaa ttgttgtacg atctttcggc gatgcgcgct gatattggcg acatgagaaa      1800
     gtacgccgtc ctcgtgtatt caaaaggcga tgcgctcgag acggacgagt tggtacttca      1860
     tgttgacatc gagcaccaac gcattcccac atctggggtg ctcccagtct aatccgtggt      1920
     tttcccagaa tcctccctcc ggtcctgtgg cgggagctga gttggtagtg ttgctataaa      1980
     ctacctgaag tcactaaacg ctttgcggtg aacgggttgt ccatccagct tacggctaaa      2040
     atggtcagtc gtggagaaat ccacgccagt agacttacaa gtctctgagg tgcctttgaa      2100
     accatctcct aggtttcttc ggaaggactt cggtccgtgt actactagca caagatgcta      2160
     gttttagggt acgggcatcc ccccccttca gtgggggtct cttaaaggag acca            2214
//