ID   JF279605; SV 1; linear; genomic RNA; STD; VRL; 2178 BP.
XX
AC   JF279605;
XX
DT   26-JUL-2011 (Rel. 109, Created)
DT   26-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Tss-In segment RNA-3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2178
RA   Geetanjali S., Mandal B., Kumar R., Srivastava P.S.;
RT   "Characterisation of two distinct Indian strains of Cucumber mosaic virus
RT   infecting tomato and subgroup-specific diagnosis based on complete RNA-3
RT   genome";
RL   Unpublished.
XX
RN   [2]
RP   1-2178
RA   Mandal B., Geetanjali S.;
RT   ;
RL   Submitted (31-JAN-2011) to the INSDC.
RL   Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New
RL   Delhi, Delhi 110012, India
XX
DR   MD5; 13b74b10d82552f85fc7bf26421edaca.
DR   EuropePMC; PMC3550734; 23637513.
DR   EuropePMC; PMC3550809; 23730005.
DR   EuropePMC; PMC3650197; 24426254.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2178
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA-3"
FT                   /host="tomato"
FT                   /isolate="Tss-In"
FT                   /mol_type="genomic RNA"
FT                   /country="India:New Delhi"
FT                   /isolation_source="tomato plant showing shoestring symptoms
FT                   at experimental field of IARI"
FT                   /collection_date="Apr-2008"
FT                   /note="subgroup-II"
FT                   /db_xref="taxon:12305"
FT   5'UTR           1..63
FT   gene            64..903
FT                   /gene="MP"
FT   CDS             64..903
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:G0ZI01"
FT                   /protein_id="AEK69522.1"
FT                   /translation="MAFQGPSRTLTQQSSAASSDDLQKILFSPDAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPQVTSNNLLSFFKSGYDAGELRSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLKIYLADLGDKELSPIDGQCVTLHNHELPALISFQPTYDCPMGLVGNRHRCFAVVVE
FT                   RHGYIGYGGTTASVCSNWQAQFSSKNNNYTHAAAGKTLVLPYNRLAEHSKPSAVARLLK
FT                   SQLNNVSSSRYLLPNVALNQNASGHESEILKESPPIAIGSPSASRNNSFRSQVVNGL"
FT   misc_feature    904..1199
FT                   /note="intergenic region"
FT   gene            1200..1856
FT                   /gene="CP"
FT   CDS             1200..1856
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /note="coat protein"
FT                   /db_xref="GOA:G0ZI02"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:G0ZI02"
FT                   /protein_id="AEK69521.1"
FT                   /translation="MDKSGSPNASRTSRRRRPRRGSRSASGADAGLRALTQQMLRLNKT
FT                   LAIGRPTLNHPTFVGSESCKPGYTFTSITLKPPEIEKGSYFGRRLSLPDSVTDYDKKLV
FT                   SRIQIRINPLPKFDSTVWVTVRKVPSSSDLSVAAISAMFGDGNSPVLVYQYAASGVQAN
FT                   NKLLYDLSEMRADIGDMRKYAVLVYSKDDKLEKDEIVLHVDVEHQRIPISRVLPV"
FT   3'UTR           1857..2178
XX
SQ   Sequence 2178 BP; 495 A; 505 C; 525 G; 653 T; 0 other;
     gtaatcttac cactgtgtgt gtgtgtgtgt tggttagtgt gtcgtgttta gattacgaag        60
     gttatggcgt tccaaggtcc cagtaggacg ttaactcaac agtcctcggc ggcgtcgtct       120
     gacgacttac agaagatatt attcagcccc gatgccatca agaagatggc tactgagtgt       180
     gacctaggtc gacatcattg gatgcgcgcg gataacgcca tctctgtcag acctctcgtt       240
     ccccaagtaa ccagtaacaa tttattgtct ttctttaaat ctgggtatga tgccggtgaa       300
     ttgcgctcta aaggctatat gagcgttcct caagtgctgt gtgccgttac caggacggtt       360
     tctacggatg ctgagggttc tttgaaaatt tatttggctg acctaggtga taaagaatta       420
     tccccaattg atgggcagtg tgttacttta cataatcatg agctccctgc tttgatatct       480
     ttccaaccta cctacgattg ccccatggga ttagttggca atcggcatcg atgtttcgcg       540
     gtagtcgttg agagacatgg ttatattggt tacggtggta ccactgctag cgtgtgtagt       600
     aactggcaag ctcagttttc ttcaaagaat aataattaca cacacgccgc tgctggtaag       660
     actcttgtgt tgccttacaa cagattagct gagcattcga aaccgtcagc cgtcgctcga       720
     ctgttgaagt cacagttaaa caacgttagc tcatcgcgct atcttttgcc gaacgttgct       780
     cttaatcaaa atgcgtctgg gcacgagtcc gagattttaa aggaaagccc tcccatcgct       840
     atagggagtc cgtccgcgtc ccgtaacaat agcttcagat cgcaggtggt taacggtctt       900
     taggggaggg tctttgtgtt ttgttcgttg tacctatgta tatatatact acgtttatct       960
     tccgtatgta aatacatgtg agtctagagt cccgtgtgag ttgtaacggt agacatctgt      1020
     gacgcgaagc cgcttgaaga tttcccatct ggggttagta agtccacatc acagttttaa      1080
     ggttcaattc cttttgctcc ctgttgggcc ccttactttc tcatggatgc ttctccgcga      1140
     gttagcgttt agttgttcac ctgagtcgtg tgtttcttta ttttcgtctt agtgtgccta      1200
     tggacaaatc tggatctccc aatgctagta gaacctcccg gcgtcgtcgc ccgcgtagag      1260
     gttctcggtc cgcttctggt gcggatgcag ggttgcgtgc tttgactcag cagatgctga      1320
     gactcaataa aaccctcgcc attggtcgtc ccactcttaa ccacccaacc ttcgtgggta      1380
     gtgaaagttg taaacccggt tacactttca catctattac cctgaaaccg cctgaaattg      1440
     agaaaggttc atattttggt agaaggttgt ctttgccaga ttcagtcacg gactacgata      1500
     agaagcttgt ttcgcgcatt caaatcagga ttaatcctct gccgaaattt gattctaccg      1560
     tgtgggttac agttcggaaa gtaccttcat catccgatct ttccgtcgcc gccatctctg      1620
     ctatgtttgg cgatggtaat tcaccggttt tggtttatca gtatgctgcg tccggagttc      1680
     aggccaacaa taagttactt tatgacctgt ccgagatgcg tgctgatatc ggcgacatgc      1740
     gtaagtacgc cgtcctggtt tactcgaaag acgataaact agagaaggac gagattgtac      1800
     ttcatgtcga cgtcgagcat caacgaattc ctatctcacg ggtgctccca gtctaatccg      1860
     tgtgtttacc ggcgtccgaa gacgttaaac tacactctca atcgcgagtg ctgagttggt      1920
     agtattgctc caaactgcct gaagtcccta aacgtgttgt tgcgcgggga acgggttgtc      1980
     catccagctt acggctaaaa tggtcagtcg tgtctttcac acgccgatgt cttacaagat      2040
     gtcgaggtac ccattgaaat catctcctag atttcttcgg aagggcttcg tgagaagctc      2100
     gtgcacggta atacactgat attaccaaga gtgcgggtat cgcctgtggt tttccacagg      2160
     ttctccataa ggagacca                                                    2178
//